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Properties
| Property Name | Value |
|---|
| TranscriptId | 587800 |
| Track | FilteredModels2 |
| ProteinId | 587714 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:519434..521789 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4741 ID=mRNA_4741|Name=jgi.p|Nanoce1779_2|587714|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp
AACAGAAAAAAGACACACACCTGCATGCGCCTACAACGGCGGTGGCGACC
TCCGGTGGAGAAGGAGGAAGACGCAAAGGCATTGGCGTAGCGGGTGGTAT
GTTCGGCAAGGCGGGAAGTCTCAACCAAAAAGCAGCGCGAGCATTTACAA
ACAAGAGGCATCGATCGAAGTACGCCTCCCCCGCGCTCTGCCGTCTCCCG
CCCTCTTCCCTCACTCCTGCCAGAACAACAGCAACAGCAACAGCAGGACC
ACACCCGAAGCCAGCACCTGCGGCAGCAACAGCCGGCAACCATCACCACA
AACTGAAGCGCCACTTTCCTCGTCGCCCCCACCTCTCTTGTCGATACGCC
GAAAAGGCGGCGATAGCAGCAGTGTCTCCTATGACAATGTCTCTTGGTCT
TTTTCCGGGAAGTCCAAATGCTTTGGATAATCACACGACATACGTCCAAG
CTCAAGGCATCCTAGGGGCTGAAAACAATATTTATCATATGCTACGAGAA
GATCTCGCATCTCCACCAAGCCCAATTGAAGCCTCTTGGATCTCATTAGA
AAGAAGTAAAGAAGAAAGAGCAGGGGCTGCCGCCTCTGCCGCGGAATTTG
CGGCTCTAGAAGCCGACCAAATTTCATGTACATTTAAAGCCAAGAAGCGA
ACGGGCAGCATGGGTGGATGCAGCAGTAATTGCAGAGATCTTTTCCAAGT
GGCCATTTATGCGGGCAACACCATCACCAGCAGCAGCACCAGCAGTGGCA
CCACCGGCAAGAACATAGACGACTTTCCCGTGTCGGGCGGCTTGAATGCC
CTTCTTCAGTACGTCCTTGGCCTCCATGGGATATTACACCCTATCTTTCG
ACACCGCCCATGGACTCAAAGTCCGCCTCCCCGCCCGCGAGAATCTCGCC
CCAGTAGATTTTTCCCGCCTCTCTCCTCGTGATTTATCTATGATCGCGTT
AGGAACGAGAGGGAAGAGCAGTGGTAGCACCAGCACCAGCAGTTGTAGTG
GTGGCAGTAGTAGTTATAGCACGACTAGTGATACAAGTGCAAATAACAGT
AGTAATAGAAGCAGTTGTAATAATAGCTGCAATAGTAATAATAGATGGAG
GGGAGGAAATAGTGTCGCTGCGTAGAGGATGGTTAGGGTTGGTCGGAGGA
GTAGAAAATGTAAGAAAGTGGGGGGTTGAGTGTGGCAACAGCAGCAGCAC
CAGCAGCAGCATTGGGAAAACGACGGGGGCCAGTGGTGGAGCAGATGGGG
AAAGTTGGTGAGAATGCAGTTTTTCTGGATTTTCTTATGCCTATTTCGGT
TTTTCAGGCGTTAGGTGTGGCGATAATGGCGTATGAGGCGTGAAGCTTGG
GAGAGGGAGGGGGGGGCGAGGGATGGTGGTAAGATGTTCTGTGCTGTAAA
TAGAGAAAGAATGTGTGTGTAAGTGTGCAATGACCATAGAACACGCATAG
CGGTGGCCAAGACTCCCCTTCGCGATTCCCTCGGTGTGCTGACACTTTTT
CGTGAAGGAACACTTTTTCGTGAAGGATGTCAAGGGAGTTTGAATTAGTT
GTAGGGAGCAGGCAGGCACTCAAGACAAAAACACAGCACCCTCAAAATGA
ACCAGAGGCACCACATTGCAGGGAAACGTTTTTTGGATTGGTCTTTTCGA
GTGCTGCTTTTACTGTTGCTTACGTGCCACGCTCCGTACTATCGCTATCG back to topprotein sequence of jgi.p|Nanoce1779_2|587714 >mRNA_4741-protein ID=mRNA_4741-protein|Name=jgi.p|Nanoce1779_2|587714|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MFGKAGSLNQKAARAFTNKRHRSKYASPALCRLPPSSLTPARTTATATAG
PHPKPAPAAATAGNHHHKLKRHFPRRPHLSCRYAEKAAIAAVSPMTMSLG
LFPGSPNALDNHTTYVQAQGILGAENNIYHMLREDLASPPSPIEASWISL
ERSKEERAGAAASAAEFAALEADQISCTFKAKKRTGSMGGCSSNCRDLFQ
VAIYAGNTITSSSTSSGTTGKNIDDFPVSGGLNALLQYVLGLHGILHPIF
RHRPWTQSPPPRPRESRPSRFFPPLSS* back to topmRNA from alignment at scaffold_9:519434..521789- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4741 ID=mRNA_4741|Name=jgi.p|Nanoce1779_2|587714|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp|location=Sequence derived from alignment at scaffold_9:519434..521789- (Nannochloropsis oceanica)
AACAGAAAAAAGACACACACCTGCATGCGCCTACAACGGCGGTGGCGACC
TCCGGTGGAGAAGGAGGAAGACGCAAAGGCATTGGCGTAGCGGGTGGTAT
GTTCGGCAAGGCGGGAAGTCTCAACCAAAAAGCAGCGCGAGCATTTACAA
ACAAGAGGTACAGTATTCACTTTTATTCTCCACTATGGACAAACGTACAA
GCGATCTGGTAGATCAGCTGGAGCGTGGTAGCTCTGACCTTCGGACCGCC
TCCATCCTTCCTATCCTGCCTCAACTCGCCCCGGACACCTCTCCCTCAGT
CCCCTTTTCCTACCTACGAAGATGTCACGTACATGCCCAAGGGCCGACAC
GTGCAGAGTTAGCGCGCGAAGAAGGAATCACCAATAGGCAATGAGATCAG
GCCAGGCACTGCGGCAAAATTCTCGCTCAGCGCGGCATCTTGTGAGAAGA
TTTCCCTCTTATGAAGCTTCTGTCCTTCTGCCCTACTACCTCCCAGGCAT
CGATCGAAGTACGCCTCCCCCGCGCTCTGCCGTCTCCCGCCCTCTTCCCT
CACTCCTGCCAGAACAACAGCAACAGCAACAGCAGGACCACACCCGAAGC
CAGCACCTGCGGCAGCAACAGCCGGCAACCATCACCACAAACTGAAGCGC
CACTTTCCTCGTCGCCCCCACCTCTCTTGTCGATACGCCGAAAAGGCGGC
GATAGCAGCAGTGTCTCCTATGACAATGTCTCTTGGTCTTTTTCCGGGAA
GTCCAAATGCTTTGGATAATCACACGACATACGTCCAAGCTCAAGGTTTG
AGCTTGGGCATTCTTTTTCTCCATCCATTCTTCTTCATTGATTTTTCTCA
AGAGAGGAACTTCTTCGGCTATAATGCATTTATATGTTACTCACCCACAT
GCCCTCTCTCCCCCTCTTCCTCCCTCCCACCCACACTGTATCAACCGTCT
TTGCCTCTACCTCGAAGGCATCCTAGGGGCTGAAAACAATATTTATCATA
TGCTACGAGAAGATCTCGCATCTCCACCAAGCCCAATTGAAGCCTCTTGG
ATCTCATTAGAAAGAAGTAAAGAAGAAAGAGCAGGGGCTGCCGCCTCTGC
CGCGGAATTTGCGGCTCTAGAAGCCGACCAAATTTCATGTACATTTAAAG
CCAAGAAGCGAACGGGCAGCATGGGTGGATGCAGCAGTAATTGCAGAGAT
CTTTTCCAAGTGGCCATTTATGCGGGCAACACCATCACCAGCAGCAGCAC
CAGCAGTGGCACCACCGGCAAGAACATAGACGACTTTCCCGTGTCGGGCG
GCTTGAATGCCCTTCTTCAGGTTTGCTGACGGGCCACACCATCCTCTCGC
CGACAATAGTAACAACATCAAATACATCTTCTTGTACTTTTTTCCTTCTC
CTCCTCCTCCTTCTCCTCCTGCCTCCATTCACTTTCCTTTCCTCCCCCCC
CCCCCCCCCCCCAAGTACGTCCTTGGCCTCCATGGGATATTACACCCTAT
CTTTCGACACCGCCCATGGACTCAAAGTCCGCCTCCCCGCCCGCGAGAAT
CTCGCCCCAGTAGATTTTTCCCGCCTCTCTCCTCGTGATTTATCTATGAT
CGCGTTAGGAACGAGAGGGAAGAGCAGTGGTAGCACCAGCACCAGCAGTT
GTAGTGGTGGCAGTAGTAGTTATAGCACGACTAGTGATACAAGTGCAAAT
AACAGTAGTAATAGAAGCAGTTGTAATAATAGCTGCAATAGTAATAATAG
ATGGAGGGGAGGAAATAGTGTCGCTGCGTAGAGGATGGTTAGGGTTGGTC
GGAGGAGTAGAAAATGTAAGAAAGTGGGGGGTTGAGTGTGGCAACAGCAG
CAGCACCAGCAGCAGCATTGGGAAAACGACGGGGGCCAGTGGTGGAGCAG
ATGGGGAAAGTTGGTGAGAATGCAGTTTTTCTGGATTTTCTTATGCCTAT
TTCGGTTTTTCAGGCGTTAGGTGTGGCGATAATGGCGTATGAGGCGTGAA
GCTTGGGAGAGGGAGGGGGGGGCGAGGGATGGTGGTAAGATGTTCTGTGC
TGTAAATAGAGAAAGAATGTGTGTGTAAGTGTGCAATGACCATAGAACAC
GCATAGCGGTGGCCAAGACTCCCCTTCGCGATTCCCTCGGTGTGCTGACA
CTTTTTCGTGAAGGAACACTTTTTCGTGAAGGATGTCAAGGGAGTTTGAA
TTAGTTGTAGGGAGCAGGCAGGCACTCAAGACAAAAACACAGCACCCTCA
AAATGAACCAGAGGCACCACATTGCAGGGAAACGTTTTTTGGATTGGTCT
TTTCGAGTGCTGCTTTTACTGTTGCTTACGTGCCACGCTCCGTACTATCG
CTATCG back to topCoding sequence (CDS) from alignment at scaffold_9:519434..521789- >mRNA_4741 ID=mRNA_4741|Name=jgi.p|Nanoce1779_2|587714|organism=Nannochloropsis oceanica|type=CDS|length=3336bp|location=Sequence derived from alignment at scaffold_9:519434..521789- (Nannochloropsis oceanica)
TACGTCCTTGGCCTCCATGGGATATTACACCCTATCTTTCGACACCGCCC
ATGGACTCAAAGTCCGCCTCCCCGCCCGCGAGAATCTCGCCCCAGTAGAT
TTTTCCCGCCTCTCTCCTCGTGAGCATCCTAGGGGCTGAAAACAATATTT
ATCATATGCTACGAGAAGATCTCGCATCTCCACCAAGCCCAATTGAAGCC
TCTTGGATCTCATTAGAAAGAAGTAAAGAAGAAAGAGCAGGGGCTGCCGC
CTCTGCCGCGGAATTTGCGGCTCTAGAAGCCGACCAAATTTCATGTACAT
TTAAAGCCAAGAAGCGAACGGGCAGCATGGGTGGATGCAGCAGTAATTGC
AGAGATCTTTTCCAAGTGGCCATTTATGCGGGCAACACCATCACCAGCAG
CAGCACCAGCAGTGGCACCACCGGCAAGAACATAGACGACTTTCCCGTGT
CGGGCGGCTTGAATGCCCTTCTTCAGGCATCGATCGAAGTACGCCTCCCC
CGCGCTCTGCCGTCTCCCGCCCTCTTCCCTCACTCCTGCCAGAACAACAG
CAACAGCAACAGCAGGACCACACCCGAAGCCAGCACCTGCGGCAGCAACA
GCCGGCAACCATCACCACAAACTGAAGCGCCACTTTCCTCGTCGCCCCCA
CCTCTCTTGTCGATACGCCGAAAAGGCGGCGATAGCAGCAGTGTCTCCTA
TGACAATGTCTCTTGGTCTTTTTCCGGGAAGTCCAAATGCTTTGGATAAT
CACACGACATACGTCCAAGCTCAAGATGTTCGGCAAGGCGGGAAGTCTCA
ACCAAAAAGCAGCGCGAGCATTTACAAACAAGAGTACGTCCTTGGCCTCC
ATGGGATATTACACCCTATCTTTCGACACCGCCCATGGACTCAAAGTCCG
CCTCCCCGCCCGCGAGAATCTCGCCCCAGTAGATTTTTCCCGCCTCTCTC
CTCGTGAGCATCCTAGGGGCTGAAAACAATATTTATCATATGCTACGAGA
AGATCTCGCATCTCCACCAAGCCCAATTGAAGCCTCTTGGATCTCATTAG
AAAGAAGTAAAGAAGAAAGAGCAGGGGCTGCCGCCTCTGCCGCGGAATTT
GCGGCTCTAGAAGCCGACCAAATTTCATGTACATTTAAAGCCAAGAAGCG
AACGGGCAGCATGGGTGGATGCAGCAGTAATTGCAGAGATCTTTTCCAAG
TGGCCATTTATGCGGGCAACACCATCACCAGCAGCAGCACCAGCAGTGGC
ACCACCGGCAAGAACATAGACGACTTTCCCGTGTCGGGCGGCTTGAATGC
CCTTCTTCAGGCATCGATCGAAGTACGCCTCCCCCGCGCTCTGCCGTCTC
CCGCCCTCTTCCCTCACTCCTGCCAGAACAACAGCAACAGCAACAGCAGG
ACCACACCCGAAGCCAGCACCTGCGGCAGCAACAGCCGGCAACCATCACC
ACAAACTGAAGCGCCACTTTCCTCGTCGCCCCCACCTCTCTTGTCGATAC
GCCGAAAAGGCGGCGATAGCAGCAGTGTCTCCTATGACAATGTCTCTTGG
TCTTTTTCCGGGAAGTCCAAATGCTTTGGATAATCACACGACATACGTCC
AAGCTCAAGATGTTCGGCAAGGCGGGAAGTCTCAACCAAAAAGCAGCGCG
AGCATTTACAAACAAGAGTACGTCCTTGGCCTCCATGGGATATTACACCC
TATCTTTCGACACCGCCCATGGACTCAAAGTCCGCCTCCCCGCCCGCGAG
AATCTCGCCCCAGTAGATTTTTCCCGCCTCTCTCCTCGTGAGCATCCTAG
GGGCTGAAAACAATATTTATCATATGCTACGAGAAGATCTCGCATCTCCA
CCAAGCCCAATTGAAGCCTCTTGGATCTCATTAGAAAGAAGTAAAGAAGA
AAGAGCAGGGGCTGCCGCCTCTGCCGCGGAATTTGCGGCTCTAGAAGCCG
ACCAAATTTCATGTACATTTAAAGCCAAGAAGCGAACGGGCAGCATGGGT
GGATGCAGCAGTAATTGCAGAGATCTTTTCCAAGTGGCCATTTATGCGGG
CAACACCATCACCAGCAGCAGCACCAGCAGTGGCACCACCGGCAAGAACA
TAGACGACTTTCCCGTGTCGGGCGGCTTGAATGCCCTTCTTCAGGCATCG
ATCGAAGTACGCCTCCCCCGCGCTCTGCCGTCTCCCGCCCTCTTCCCTCA
CTCCTGCCAGAACAACAGCAACAGCAACAGCAGGACCACACCCGAAGCCA
GCACCTGCGGCAGCAACAGCCGGCAACCATCACCACAAACTGAAGCGCCA
CTTTCCTCGTCGCCCCCACCTCTCTTGTCGATACGCCGAAAAGGCGGCGA
TAGCAGCAGTGTCTCCTATGACAATGTCTCTTGGTCTTTTTCCGGGAAGT
CCAAATGCTTTGGATAATCACACGACATACGTCCAAGCTCAAGATGTTCG
GCAAGGCGGGAAGTCTCAACCAAAAAGCAGCGCGAGCATTTACAAACAAG
AGTACGTCCTTGGCCTCCATGGGATATTACACCCTATCTTTCGACACCGC
CCATGGACTCAAAGTCCGCCTCCCCGCCCGCGAGAATCTCGCCCCAGTAG
ATTTTTCCCGCCTCTCTCCTCGTGAGCATCCTAGGGGCTGAAAACAATAT
TTATCATATGCTACGAGAAGATCTCGCATCTCCACCAAGCCCAATTGAAG
CCTCTTGGATCTCATTAGAAAGAAGTAAAGAAGAAAGAGCAGGGGCTGCC
GCCTCTGCCGCGGAATTTGCGGCTCTAGAAGCCGACCAAATTTCATGTAC
ATTTAAAGCCAAGAAGCGAACGGGCAGCATGGGTGGATGCAGCAGTAATT
GCAGAGATCTTTTCCAAGTGGCCATTTATGCGGGCAACACCATCACCAGC
AGCAGCACCAGCAGTGGCACCACCGGCAAGAACATAGACGACTTTCCCGT
GTCGGGCGGCTTGAATGCCCTTCTTCAGGCATCGATCGAAGTACGCCTCC
CCCGCGCTCTGCCGTCTCCCGCCCTCTTCCCTCACTCCTGCCAGAACAAC
AGCAACAGCAACAGCAGGACCACACCCGAAGCCAGCACCTGCGGCAGCAA
CAGCCGGCAACCATCACCACAAACTGAAGCGCCACTTTCCTCGTCGCCCC
CACCTCTCTTGTCGATACGCCGAAAAGGCGGCGATAGCAGCAGTGTCTCC
TATGACAATGTCTCTTGGTCTTTTTCCGGGAAGTCCAAATGCTTTGGATA
ATCACACGACATACGTCCAAGCTCAAGATGTTCGGCAAGGCGGGAAGTCT
CAACCAAAAAGCAGCGCGAGCATTTACAAACAAGAG back to top
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