jgi.p|Nanoce1779_2|441969, mRNA_4740 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|441969
Unique NamemRNA_4740
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length455
Alignment locationscaffold_9:519586..520161 +

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Properties
Property NameValue
TranscriptId442055
TrackFilteredModels2
ProteinId441969
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:519586..520161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|441969gene_4740Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|441969mRNA_4740-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4740CDS_4740Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4740 ID=mRNA_4740|Name=jgi.p|Nanoce1779_2|441969|organism=Nannochloropsis oceanica|type=mRNA|length=455bp
CTAATTCAAACTCCCTTGACATCCTTCACGAAAAAGTGTTCCTTCACGAA
AAAGTGTCAGCACACCGAGGGAATCGCGAAGGGGAGTCTTGGCCACCGCT
ATGCGTGTTCTATGGTCATTGCACACTTACACACACATTCTTTCTCTATT
TACAGCACAGAACATCTTACCACCTTTCCCCATCTGCTCCACCACTGGCC
CCCGTCGTTTTCCCAATGCTGCTGCTGGTGCTGCTGCTGTTGCCACACTC
AACCCCCCACTTTCTTACATTTTCTACTCCTCCGACCAACCCTAACCATC
CTCTACGCAGCGACACTATTTCCTCCCCTCCATCTATTATTACTATTGCA
GCTATTATTACAACTGCTTCTATTACTACTGTTATTTGCACTTGTATCAC
TAGTCGTGCTATAACTACTACTGCCACCACTACAACTGCTGGTGCTGGTG
CTACC
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protein sequence of jgi.p|Nanoce1779_2|441969

>mRNA_4740-protein ID=mRNA_4740-protein|Name=jgi.p|Nanoce1779_2|441969|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MVIAHLHTHSFSIYSTEHLTTFPHLLHHWPPSFSQCCCWCCCCCHTQPPT
FLHFLLLRPTLTILYAATLFPPLHLLLLLQLLLQLLLLLLLFALVSLVVL
*
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mRNA from alignment at scaffold_9:519586..520161+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4740 ID=mRNA_4740|Name=jgi.p|Nanoce1779_2|441969|organism=Nannochloropsis oceanica|type=mRNA|length=576bp|location=Sequence derived from alignment at scaffold_9:519586..520161+ (Nannochloropsis oceanica)
CTAATTCAAACTCCCTTGACATCCTTCACGAAAAAGTGTTCCTTCACGAA
AAAGTGTCAGCACACCGAGGGAATCGCGAAGGGGAGTCTTGGCCACCGCT
ATGCGTGTTCTATGGTCATTGCACACTTACACACACATTCTTTCTCTATT
TACAGCACAGAACATCTTACCACCATCCCTCGCCCCCCCCTCCCTCTCCC
AAGCTTCACGCCTCATACGCCATTATCGCCACACCTAACGCCTGAAAAAC
CGAAATAGGCATAAGAAAATCCAGAAAAACTGCATTCTCACCAACTTTCC
CCATCTGCTCCACCACTGGCCCCCGTCGTTTTCCCAATGCTGCTGCTGGT
GCTGCTGCTGTTGCCACACTCAACCCCCCACTTTCTTACATTTTCTACTC
CTCCGACCAACCCTAACCATCCTCTACGCAGCGACACTATTTCCTCCCCT
CCATCTATTATTACTATTGCAGCTATTATTACAACTGCTTCTATTACTAC
TGTTATTTGCACTTGTATCACTAGTCGTGCTATAACTACTACTGCCACCA
CTACAACTGCTGGTGCTGGTGCTACC
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Coding sequence (CDS) from alignment at scaffold_9:519586..520161+

>mRNA_4740 ID=mRNA_4740|Name=jgi.p|Nanoce1779_2|441969|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_9:519586..520161+ (Nannochloropsis oceanica)
ATGGTCATTGCACACTTACACACACATTCTTTCTCTATTTACAGCACAGA
ACATCTTACCACCTTTCCCCATCTGCTCCACCACTGGCCCCCGTCGTTTT
CCCAATGCTGCTGCTGGTGCTGCTGCTGTTGCCACACTCAACCCCCCACT
TTCTTACATTTTCTACTCCTCCGACCAACCCTAACCATCCTCTACGCAGC
GACACTATTTCCTCCCCTCCATCTATTATTACTATTGCAGCTATTATTAC
AACTGCTTCTATTACTACTGTTATTTGCACTTGTATCACTAGTCGTGCTA
TAAATGGTCATTGCACACTTACACACACATTCTTTCTCTATTTACAGCAC
AGAACATCTTACCACCTTTCCCCATCTGCTCCACCACTGGCCCCCGTCGT
TTTCCCAATGCTGCTGCTGGTGCTGCTGCTGTTGCCACACTCAACCCCCC
ACTTTCTTACATTTTCTACTCCTCCGACCAACCCTAACCATCCTCTACGC
AGCGACACTATTTCCTCCCCTCCATCTATTATTACTATTGCAGCTATTAT
TACAACTGCTTCTATTACTACTGTTATTTGCACTTGTATCACTAGTCGTG
CTATAA
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Synonyms
Publications