jgi.p|Nanoce1779_2|577406, mRNA_474 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577406
Unique NamemRNA_474
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2022
Alignment locationscaffold_3:1146222..1148243 -

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Properties
Property NameValue
TranscriptId577492
TrackFilteredModels2
ProteinId577406
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1146222..1148243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577406gene_474Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577406mRNA_474-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_474CDS_474Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_474 ID=mRNA_474|Name=jgi.p|Nanoce1779_2|577406|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp
ACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACATGCAGCCG
CATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTCTTGACGC
CCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCATCAGCAG
AGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGTTCCAGGG
CTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGCGCGACGA
GTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCATCGAGACG
TGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAGAGGATCT
GGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTCATTTTTG
GGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTGGTTTGAC
GGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATGTGTTGAA
AGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTTATCATTT
TCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGACGAAGGAT
CAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGTGGGTGTG
GATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGATCTCCGCG
TTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCTTTCCTTG
CTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGACGTCTGA
GACGTGAGAAGCATAGCTTTTTGTAGCCTAGGGTTGATATTCTATGTACA
AGTAGTGAGTGCGTGTGATGTGCGCAGTGTGTCATTCGTGTGCATGTTTT
TTTGTTTTTTTAAAAATTGTGTGTGGGGATGACCTGTGCGTGAAGTAGGG
AAAGCATCCGTAAGTACATAAAAATGTTTTGACTTCTCTAGCCTACTTAA
ACTTCGATAAATCTTCATTGGGGCGACTAACGAGGATATAAAGGACAACT
ATAAAGAAGTATAACTAACTATTTTTATCTTGTCGCGAAGATCACAAATA
GCTGGACGGAAAAAAAAAAGATGCTAAAGTTATTCACGTCGAATGGAGTC
GGGTTAAGGAGCACTGAATAGCAAGGTCTCAACTTCTGCCTATTCATCGC
CGCCCAGCCCTCCAAAGCTTGGCTGATAGCCATTCCCATGTAGTAGTTTA
TCAAAGAATGACATGCGAGTGTGAGGCTTTTTATCGCCTTTGCTGGGAAT
GCCGGGGAGCATGTAGAAGCACCAGCAGGGAGGATGGCCGTCGCGCTCAG
CTCGGAAGGGAAGGCGACGTACCCAAAAGGAGTGGTGCACTGGACCATAT
ATATGAGGAGAGATGTAGCTGTTTCGAATGGAAAGATCACGGGTCGAACC
ACCAGATGCATAAGAAAACAACACAAAAGGACGACTTGAAGCATATAAAG
GCTCGGAACGAGAAGAACGTCACACAGCAAGCACCACGCACGACAAACGC
TAAAGCACGGCAAGGACGAAATGTCTCTTTCTGGAATAGTGCAAACTATG
CAAAATTATCAAGGCATTGATGTCCAGCCAAATATCATGTCATCGCCTTG
CATAGATGCATGCCGGTTGTTTTGCCTTGCTTTGTCAAACTAGAAGTGCA
AACTCAACTTGTCTCTCTTCCTTCAAGGGCCACCAGTGCCAGCACTCTCC
CATTGCCGACAAAGTACACAGGGAGCTCCGGTTTCGGTGATCCTTGGAGT
GGTGTGCAATGCCCGCTGCATTCCCAGTCCACGGCTACCGTCTGTGCGAA
GATTCTATCTGGAACCCAACCGCATGCAGAGATGAGACATACTCCCTCCG
GCGCACCCCTCCTTCGAGCATCTCTGATTCTCATGCCCGCTCTCATCACC
TTTCTCATACACATAGGCACCATGGCACCCGTACCACGATGCAGTGTCTT
CATAGTACTGCTGACTCTTGCG
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protein sequence of jgi.p|Nanoce1779_2|577406

>mRNA_474-protein ID=mRNA_474-protein|Name=jgi.p|Nanoce1779_2|577406|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MHDRRTCSRMAMLTLLACTTTAFLTPSPRQISLPLIRRPHQQRSKGTLSA
VDANDLFQGYMGLIHTHPLLTKCATSACIVPLGDLSAQVIETWKAKKAAL
AEEKPKEDLDDMSIDWKRAVRFLIFGATLQPIWNHYYFQWFDGLIPPPAD
PVSMTNVLKVTLDQGIQAPIFTVIIFAYLDFLEGKNLQETKDQIKRDFWP
CITTNWWVWIPITTLNYVFIPPDLRVLFVNVAFLGWCVFLSLLVNKKDEG
PSSQNMTSET*
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mRNA from alignment at scaffold_3:1146222..1148243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_474 ID=mRNA_474|Name=jgi.p|Nanoce1779_2|577406|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp|location=Sequence derived from alignment at scaffold_3:1146222..1148243- (Nannochloropsis oceanica)
ACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACATGCAGCCG
CATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTCTTGACGC
CCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCATCAGCAG
AGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGTTCCAGGG
CTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGCGCGACGA
GTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCATCGAGACG
TGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAGAGGATCT
GGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTCATTTTTG
GGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTGGTTTGAC
GGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATGTGTTGAA
AGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTTATCATTT
TCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGACGAAGGAT
CAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGTGGGTGTG
GATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGATCTCCGCG
TTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCTTTCCTTG
CTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGACGTCTGA
GACGTGAGAAGCATAGCTTTTTGTAGCCTAGGGTTGATATTCTATGTACA
AGTAGTGAGTGCGTGTGATGTGCGCAGTGTGTCATTCGTGTGCATGTTTT
TTTGTTTTTTTAAAAATTGTGTGTGGGGATGACCTGTGCGTGAAGTAGGG
AAAGCATCCGTAAGTACATAAAAATGTTTTGACTTCTCTAGCCTACTTAA
ACTTCGATAAATCTTCATTGGGGCGACTAACGAGGATATAAAGGACAACT
ATAAAGAAGTATAACTAACTATTTTTATCTTGTCGCGAAGATCACAAATA
GCTGGACGGAAAAAAAAAAGATGCTAAAGTTATTCACGTCGAATGGAGTC
GGGTTAAGGAGCACTGAATAGCAAGGTCTCAACTTCTGCCTATTCATCGC
CGCCCAGCCCTCCAAAGCTTGGCTGATAGCCATTCCCATGTAGTAGTTTA
TCAAAGAATGACATGCGAGTGTGAGGCTTTTTATCGCCTTTGCTGGGAAT
GCCGGGGAGCATGTAGAAGCACCAGCAGGGAGGATGGCCGTCGCGCTCAG
CTCGGAAGGGAAGGCGACGTACCCAAAAGGAGTGGTGCACTGGACCATAT
ATATGAGGAGAGATGTAGCTGTTTCGAATGGAAAGATCACGGGTCGAACC
ACCAGATGCATAAGAAAACAACACAAAAGGACGACTTGAAGCATATAAAG
GCTCGGAACGAGAAGAACGTCACACAGCAAGCACCACGCACGACAAACGC
TAAAGCACGGCAAGGACGAAATGTCTCTTTCTGGAATAGTGCAAACTATG
CAAAATTATCAAGGCATTGATGTCCAGCCAAATATCATGTCATCGCCTTG
CATAGATGCATGCCGGTTGTTTTGCCTTGCTTTGTCAAACTAGAAGTGCA
AACTCAACTTGTCTCTCTTCCTTCAAGGGCCACCAGTGCCAGCACTCTCC
CATTGCCGACAAAGTACACAGGGAGCTCCGGTTTCGGTGATCCTTGGAGT
GGTGTGCAATGCCCGCTGCATTCCCAGTCCACGGCTACCGTCTGTGCGAA
GATTCTATCTGGAACCCAACCGCATGCAGAGATGAGACATACTCCCTCCG
GCGCACCCCTCCTTCGAGCATCTCTGATTCTCATGCCCGCTCTCATCACC
TTTCTCATACACATAGGCACCATGGCACCCGTACCACGATGCAGTGTCTT
CATAGTACTGCTGACTCTTGCG
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Coding sequence (CDS) from alignment at scaffold_3:1146222..1148243-

>mRNA_474 ID=mRNA_474|Name=jgi.p|Nanoce1779_2|577406|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_3:1146222..1148243- (Nannochloropsis oceanica)
ATGCACGATAGAAGAACATGCAGCCGCATGGCCATGCTGACCTTGCTGGC
ATGCACCACCACGGCATTCTTGACGCCCTCGCCGCGACAGATCTCGTTGC
CCTTGATTCGGCGCCCCCATCAGCAGAGAAGTAAAGGCACCTTGTCGGCC
GTGGATGCCAACGACTTGTTCCAGGGCTACATGGGGCTTATCCACACACA
CCCCTTGCTCACAAAGTGCGCGACGAGTGCCTGCATCGTGCCTTTAGGGG
ACCTGTCCGCGCAGGTCATCGAGACGTGGAAGGCGAAAAAAGCAGCTTTG
GCGGAGGAGAAGCCCAAAGAGGATCTGGACGACATGAGCATCGATTGGAA
GCGAGCGGTGCGTTTCCTCATTTTTGGGGCGACTTTGCAGCCGATTTGGA
ACCATTACTATTTTCAGTGGTTTGACGGCTTGATCCCTCCACCTGCGGAT
CCAGTCAGCATGACGAATGTGTTGAAAGTCACGTTGGACCAGGGCATTCA
AGCTCCAATTTTCACGGTTATCATTTTCGCTTACCTTGACTTTCTCGAGG
GCAAGAACCTGCAGGAGACGAAGGATCAGATCAAGCGGGATTTCTGGCCC
TGTATCACCACGAATTGGTGGGTGTGGATCCCTATTACGACACTTAACTA
CGTTTTCATCCCCCCTGATCTCCGCGTTCTCTTTGTAAACGTGGCTTTCT
TGGGTTGGTGTGTATTCCTTTCCTTGCTGGTAAACAAAAAGGATGAAGGA
CCTTCCTCGCAGAACATGACGTCTGAGACGTGA
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Synonyms
Publications