jgi.p|Nanoce1779_2|587709, mRNA_4739 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587709
Unique NamemRNA_4739
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_9:518404..519518 +

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Properties
Property NameValue
TranscriptId587795
TrackFilteredModels2
ProteinId587709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:518404..519518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587709gene_4739Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587709mRNA_4739-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4739CDS_4739Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4739 ID=mRNA_4739|Name=jgi.p|Nanoce1779_2|587709|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
CAACAGCACTACTCCCTCCCCATCATCAATCATGCCCAACCCCGTTGTCT
TCTTTGACTGCACCACTGGCTCCGGCAAGGCCTTGGGCCGCGTTGAAATG
ACTCTGCGCGCCGATGTCGTGCCTAAGACCGCGGAGAACTTCCGCGCGCT
CTGCACTGGCGAGAAGGGGACGGGCCGCTCCGGCAAGCCCCTGCACTTCA
AGGGCTCCACTTTTCACCGTGTCATCCCTGACTTTATGTGCCAGGGCGGT
GACTTCACGGCCGGCAACGGCACGGGCGGCGAGTCCATCTATGGCTCCAA
GTTCCCCGACGAGAACTTTCAGCTCAAGCACACTGGCCCCGGCATCCTGT
CGATGGCTAACGCCGGCCCCAACACCAACGGCTCGCAATTCTTCCTTTGC
ACGGCTGAGACCGCCTGGTTGGACGGCAAGCATGTCGTGTTCGGTAGTGT
TACCAAGGGTATGGATGTCGTAAAAGCCATTGAATCTTATGGCTCCCGTA
CGGGCGCGACCCGCGAGAAGATCATCATCGCTGACTGCGGGCAGCTCTCT
TAAACTTTTGCTCTGGAGGTTGAAAGGAGGAAAAAGCAGGCGAAGATGTG
AAGGGGCCTTCTCCAAACTGTTTTCGCGGTGTTTATGTCATGTGTCTGTT
TATGTGTCCAGGTTCTGTCTTGCGCCCCAACAGGCAGGGCGTCAGACAGC
GAGAGAAAGAGGAGGAAATGATATGGAGCCTCCTTCTTGGTAAAACTATG
CACGTGGTCGGCGACGGTGGCAGCAAACGAACCAGAGAGAGAGGGAGAGC
GATAGCGATAGTACGGAGCGTGGCACGTAAGCAACAGTAAAAGCAGCACT
CGAAAAGACCAATCCAAAAAACGTTTCCCTGCAA
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protein sequence of jgi.p|Nanoce1779_2|587709

>mRNA_4739-protein ID=mRNA_4739-protein|Name=jgi.p|Nanoce1779_2|587709|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MPNPVVFFDCTTGSGKALGRVEMTLRADVVPKTAENFRALCTGEKGTGRS
GKPLHFKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFPDENFQLKH
TGPGILSMANAGPNTNGSQFFLCTAETAWLDGKHVVFGSVTKGMDVVKAI
ESYGSRTGATREKIIIADCGQLS*
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mRNA from alignment at scaffold_9:518404..519518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4739 ID=mRNA_4739|Name=jgi.p|Nanoce1779_2|587709|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp|location=Sequence derived from alignment at scaffold_9:518404..519518+ (Nannochloropsis oceanica)
CAACAGCACTACTCCCTCCCCATCATCAATCATGCCCAACCCCGTTGTCT
TCTTTGACTGCACCACTGGCTCCGGCAAGGCCTTGGGCCGCGTTGAAATG
ACTCTGCGCGCCGATGTCGTGCCTAAGACCGCGGAGAACTTCCGCGCGCT
CTGCACTGGCGAGAAGGGGACGGGCCGCTCCGGCAAGCCCCTGCACTTCA
AGGGCTCCACTTTTCACCGTGTCATCCCTGACTTTATGTGCCAGGGCGGT
GACTTCACGGCCGGCAACGGCACGGGCGGCGAGTCCATCTATGGGTAAGT
GCTGGGGATTTCGTATGTCTTTTTTCGACGTATGCCCGCCTGGTATCCTC
TCATATTCATTCCTTCTGCCCTCCGTATCCCCTTCTCCACCCACAGCTCC
AAGTTCCCCGACGAGAACTTTCAGCTCAAGGTTAGTAAAATAGGGAAGGA
GGCAGGGAGAGAAACATAACAGAAGCGTGAAAATGAGGATGAAAAATTAT
TTATCGCCTCCCTCCCCCTGCCTCTCTCTCCCCCTCCTTCCCTCTCTCTC
CCCCTCCAGCACACTGGCCCCGGCATCCTGTCGATGGCTAACGCCGGCCC
CAACACCAACGGCTCGCAATTCTTCCTTTGCACGGCTGAGACCGCCTGGT
TGGACGGCAAGCATGTCGTGTTCGGTAGTGTTACCAAGGGTATGGATGTC
GTAAAAGCCATTGAATCTTATGGCTCCCGTACGGGCGCGACCCGCGAGAA
GATCATCATCGCTGACTGCGGGCAGCTCTCTTAAACTTTTGCTCTGGAGG
TTGAAAGGAGGAAAAAGCAGGCGAAGATGTGAAGGGGCCTTCTCCAAACT
GTTTTCGCGGTGTTTATGTCATGTGTCTGTTTATGTGTCCAGGTTCTGTC
TTGCGCCCCAACAGGCAGGGCGTCAGACAGCGAGAGAAAGAGGAGGAAAT
GATATGGAGCCTCCTTCTTGGTAAAACTATGCACGTGGTCGGCGACGGTG
GCAGCAAACGAACCAGAGAGAGAGGGAGAGCGATAGCGATAGTACGGAGC
GTGGCACGTAAGCAACAGTAAAAGCAGCACTCGAAAAGACCAATCCAAAA
AACGTTTCCCTGCAA
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Coding sequence (CDS) from alignment at scaffold_9:518404..519518+

>mRNA_4739 ID=mRNA_4739|Name=jgi.p|Nanoce1779_2|587709|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_9:518404..519518+ (Nannochloropsis oceanica)
ATGCCCAACCCCGTTGTCTTCTTTGACTGCACCACTGGCTCCGGCAAGGC
CTTGGGCCGCGTTGAAATGACTCTGCGCGCCGATGTCGTGCCTAAGACCG
CGGAGAACTTCCGCGCGCTCTGCACTGGCGAGAAGGGGACGGGCCGCTCC
GGCAAGCCCCTGCACTTCAAGGGCTCCACTTTTCACCGTGTCATCCCTGA
CTTTATGTGCCAGGGCGGTGACTTCACGGCCGGCAACGGCACGGGCGGCG
AGTCCATCTATGGCTCCAAGTTCCCCGACGAGAACTTTCAGCTCAAGCAC
ACTGGCCCCGGCATCCTGTCGATGGCTAACGCCGGCCCCAACACCAACGG
CTCGCAATTCTTCCTTTGCACGGCTGAGACCGCCTGGTTGGACGGCAAGC
ATGTCGTGTTCGGTAGTGTTACCAAGGGTATGGATGTCGTAAAAGCCATT
GAATCTTATGGCTCCCGTACGGGCGCGACCCGCGAGAAGATCATCATCGC
TGACTGCGGGCAGCTCTCTTAAATGCCCAACCCCGTTGTCTTCTTTGACT
GCACCACTGGCTCCGGCAAGGCCTTGGGCCGCGTTGAAATGACTCTGCGC
GCCGATGTCGTGCCTAAGACCGCGGAGAACTTCCGCGCGCTCTGCACTGG
CGAGAAGGGGACGGGCCGCTCCGGCAAGCCCCTGCACTTCAAGGGCTCCA
CTTTTCACCGTGTCATCCCTGACTTTATGTGCCAGGGCGGTGACTTCACG
GCCGGCAACGGCACGGGCGGCGAGTCCATCTATGGCTCCAAGTTCCCCGA
CGAGAACTTTCAGCTCAAGCACACTGGCCCCGGCATCCTGTCGATGGCTA
ACGCCGGCCCCAACACCAACGGCTCGCAATTCTTCCTTTGCACGGCTGAG
ACCGCCTGGTTGGACGGCAAGCATGTCGTGTTCGGTAGTGTTACCAAGGG
TATGGATGTCGTAAAAGCCATTGAATCTTATGGCTCCCGTACGGGCGCGA
CCCGCGAGAAGATCATCATCGCTGACTGCGGGCAGCTCTCTTAAATGCCC
AACCCCGTTGTCTTCTTTGACTGCACCACTGGCTCCGGCAAGGCCTTGGG
CCGCGTTGAAATGACTCTGCGCGCCGATGTCGTGCCTAAGACCGCGGAGA
ACTTCCGCGCGCTCTGCACTGGCGAGAAGGGGACGGGCCGCTCCGGCAAG
CCCCTGCACTTCAAGGGCTCCACTTTTCACCGTGTCATCCCTGACTTTAT
GTGCCAGGGCGGTGACTTCACGGCCGGCAACGGCACGGGCGGCGAGTCCA
TCTATGGCTCCAAGTTCCCCGACGAGAACTTTCAGCTCAAGCACACTGGC
CCCGGCATCCTGTCGATGGCTAACGCCGGCCCCAACACCAACGGCTCGCA
ATTCTTCCTTTGCACGGCTGAGACCGCCTGGTTGGACGGCAAGCATGTCG
TGTTCGGTAGTGTTACCAAGGGTATGGATGTCGTAAAAGCCATTGAATCT
TATGGCTCCCGTACGGGCGCGACCCGCGAGAAGATCATCATCGCTGACTG
CGGGCAGCTCTCTTAA
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Synonyms
Publications