jgi.p|Nanoce1779_2|587698, mRNA_4737 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587698
Unique NamemRNA_4737
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length555
Alignment locationscaffold_9:513899..514453 -

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Properties
Property NameValue
TranscriptId587784
TrackFilteredModels2
ProteinId587698
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:513899..514453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587698gene_4737Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587698mRNA_4737-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4737CDS_4737Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4737 ID=mRNA_4737|Name=jgi.p|Nanoce1779_2|587698|organism=Nannochloropsis oceanica|type=mRNA|length=555bp
TACTCCATTGACAATCTTCATCGGTACGTGATGGGGGTAGAGGAAGAGTA
CACAACATCTGTTGTCATAAGCCTATGGTACGAATATGTAGTATTTTTCT
TCACATTTTAATTTTCGTAATCCATTTCTACATCTTCGTCCGATCTCTTG
GTATCCCCTTCCTTGCTTTTGCCTGTAATGTACATCTACCTCAATCACTG
AGATTTTTATTCTCCCTATTCTGTCTCTTCTCTCTCACCATACCCCTACC
ATACTATCACAGCGCTTTGGAAGATGTCATCGTTGACATCTGTATCGTCA
ACCATCCCAAGGACGCCATTCCCTTTGATGGCAACTACGAGCTCCTCCTC
AAACCCGGGCAAGCCAATGAAGACACTGCCGAAGGCGGTAAGCTCCAACT
CGCCAAGCACTCTTACATCTGCTTCCGACGCCGCAGGCACAACAGGGTCC
CATCCTATGTTACAGAGGTCAAGCTCGTGCACAAGGGTTAAGAAACTCTG
CCGGAAGTCTTTGAACTGATCGAAAAGACTGTCGGTGGCACCCCAGCGGA
TCTAG
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protein sequence of jgi.p|Nanoce1779_2|587698

>mRNA_4737-protein ID=mRNA_4737-protein|Name=jgi.p|Nanoce1779_2|587698|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MVRICSIFLHILIFVIHFYIFVRSLGIPFLAFACNVHLPQSLRFLFSLFC
LFSLTIPLPYYHSALEDVIVDICIVNHPKDAIPFDGNYELLLKPGQANED
TAEGGKLQLAKHSYICFRRRRHNRVPSYVTEVKLVHKG*
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mRNA from alignment at scaffold_9:513899..514453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4737 ID=mRNA_4737|Name=jgi.p|Nanoce1779_2|587698|organism=Nannochloropsis oceanica|type=mRNA|length=555bp|location=Sequence derived from alignment at scaffold_9:513899..514453- (Nannochloropsis oceanica)
TACTCCATTGACAATCTTCATCGGTACGTGATGGGGGTAGAGGAAGAGTA
CACAACATCTGTTGTCATAAGCCTATGGTACGAATATGTAGTATTTTTCT
TCACATTTTAATTTTCGTAATCCATTTCTACATCTTCGTCCGATCTCTTG
GTATCCCCTTCCTTGCTTTTGCCTGTAATGTACATCTACCTCAATCACTG
AGATTTTTATTCTCCCTATTCTGTCTCTTCTCTCTCACCATACCCCTACC
ATACTATCACAGCGCTTTGGAAGATGTCATCGTTGACATCTGTATCGTCA
ACCATCCCAAGGACGCCATTCCCTTTGATGGCAACTACGAGCTCCTCCTC
AAACCCGGGCAAGCCAATGAAGACACTGCCGAAGGCGGTAAGCTCCAACT
CGCCAAGCACTCTTACATCTGCTTCCGACGCCGCAGGCACAACAGGGTCC
CATCCTATGTTACAGAGGTCAAGCTCGTGCACAAGGGTTAAGAAACTCTG
CCGGAAGTCTTTGAACTGATCGAAAAGACTGTCGGTGGCACCCCAGCGGA
TCTAG
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Coding sequence (CDS) from alignment at scaffold_9:513899..514453-

>mRNA_4737 ID=mRNA_4737|Name=jgi.p|Nanoce1779_2|587698|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_9:513899..514453- (Nannochloropsis oceanica)
ATGGTACGAATATGTAGTATTTTTCTTCACATTTTAATTTTCGTAATCCA
TTTCTACATCTTCGTCCGATCTCTTGGTATCCCCTTCCTTGCTTTTGCCT
GTAATGTACATCTACCTCAATCACTGAGATTTTTATTCTCCCTATTCTGT
CTCTTCTCTCTCACCATACCCCTACCATACTATCACAGCGCTTTGGAAGA
TGTCATCGTTGACATCTGTATCGTCAACCATCCCAAGGACGCCATTCCCT
TTGATGGCAACTACGAGCTCCTCCTCAAACCCGGGCAAGCCAATGAAGAC
ACTGCCGAAGGCGGTAAGCTCCAACTCGCCAAGCACTCTTACATCTGCTT
CCGACGCCGCAGGCACAACAGGGTCCCATCCTATGTTACAGAGGTCAAGC
TCGTGCACAAGGGTTAA
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Synonyms
Publications