jgi.p|Nanoce1779_2|587693, mRNA_4736 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587693
Unique NamemRNA_4736
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1993
Alignment locationscaffold_9:510861..512853 -

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Properties
Property NameValue
TranscriptId587779
TrackFilteredModels2
ProteinId587693
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:510861..512853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587693gene_4736Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587693mRNA_4736-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4736CDS_4736Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4736 ID=mRNA_4736|Name=jgi.p|Nanoce1779_2|587693|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp
ACAGCACGCCCTAAATATCCATCTGGACTTGGGCCTCAAGATCGTGTTGA
GAACTCTTCATTGTCGCCCATCAAGCTGCAACTCCCTCATACTCGCAGTC
TCCCGCTCATGGACCTGGACTACGAGGCGCCATTCCAATGTCTAAGCTTG
GACAATGTGCTTAAAATCTTTACTTTGCTATTGGTGGAGGAGCGGCTCCT
GTTTATCTCGTCCTCGACGTCATTGCTGACAGATGTCACCGAGACCATCC
TGACCTTTCTGTTTCCCTTCAAGTGGGTGACATCCCTCGCCTTTCTGACA
AGCTGATAGAGATTCTGGAGGCACCAGACTCCTTCTTGATCGGAATCTAT
ACCGAGGGCTCCACGGACTCTTGGGTCCTACCCCAGCTTTCAGACTCCCT
CTTTGTGGTAGACTTGGATCACGACTGTATCGTGGACGCAGAGGGCAAGC
AAGACAAGATTGCAATAATACAAAACTTGCCCTTATTGGAGACCTTGCGC
GAGAAGCTACTGATGGAGTTGGAGCGCGCTGCAGTCACAGTTAAGTCGGC
CGAGGCTCTGCGCGAACGGGATTCCGCGTTTGAATTGCCGGCGGTGCCTG
GGTCGGACCTAGAGGACGGACCGGCGAACATGCCTCATCTGAATCCGGAA
GTTGTTCGGGACGCTTTCTTAGTGTTCATGTGCGAACTGTAAGGAATCTA
CATCAGATTTTTCAACTCACAGGAAGGAAACAATCGGAGCGCGGACGGAG
GCACGATTGGGGATACAACACACAATGGCGTATTTGGCGCATTTGACGTC
TCGGGTTTTGTCGCGTCGGCGGACAAGACCGCTAAGCCGTTATTGGACAA
GATAGTCTTGACGCAGATGTTTGCGGCTTTGGTTCAGCAGCGCACAGAGC
ACAGTCATGCGGTGGACCGGTTGATGTTCTTCGAGACATGTGTGCAGGAA
TTGAAGGAGCGCAAGGATACAGATGTCGTGACAGTCGCGGCCGCCGCTAC
TGGGGGTGCGGGTGGTAGAAGTGGCGGTTTTGGTTCTGAAATCGTGGTGA
ATGGGCGACAGTGCCTCGATGATCTCAGTGTGAGTCCAAAGGGCGCGCCA
TTGTGGACTTCAGATTCGGCTTGTGGATCGCCGTTGCTGATTCACCAGGC
TGTGGCCTCCATGGCCCGGCGCGAAAAACTTCAGATGCAACAACAGCAGC
GAATAGAGCACGCACAGCTACAACACCACGAGGCTTTGATGATTCCAGCC
TCATCGCCGACCGGCACTACCGCTATCAACAGTCCGTCACGGAGGCATCA
CCAGTCTTCGACGGGCTTCTTTGCCGATACGCTTCCCAGTTTCATCACTG
TTCCCGGTCCCAGTGCGGAAGAATGTATGAGGTTGAGCAAAGCTGATGCA
TGTCCTGGGACTTCTGGGGCTGTAAGCAACCAGTTGAGCGTGGTAACACT
GCCATCGCAACCGCAATGCTTCTCATACACGAAATTTCCAATCTTTCTGG
ACAAGGAGTGGATGGCCATGCCGTCCTCTTCCTTGCCACCGATTTTACAT
GAGGTAATGACGCGCCGCGACATTTTTTTGAAAAAGGGAAACCGCATGAT
TCTGGCGCGCTCAGTTTCCGAATGCATGAAGGACTGGCAGGTAGTGAGCA
AACCGATAGGCGGAACCGGCGACAAGGAGATTTACCTGGCATTGCAGATT
TTCGGCATCTCACTTCATGTGTTTGCCCTCGAGGGTCTCGTACAAGGGCC
GACCGCTTAAGATTATCATGCAGGCTATTGGTGTCTTGCAGTTTCTCTTG
GACTTTCAGCTCGAGCGCTACATGGACGAAGCTATGTGGCGCTCCCTCTT
GGTAGCTTGCGGGCGGTGCGGGCACTCGTCCACGCGCAAGATTGCCATTG
CCATCTTTGGGATCATGCGGCGCTCGGGACTAACTATCAACGTCTAAACG
TACGGGCAGTACACTAAAGCCTTGGCAGAGAAGGATGCCACCA
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protein sequence of jgi.p|Nanoce1779_2|587693

>mRNA_4736-protein ID=mRNA_4736-protein|Name=jgi.p|Nanoce1779_2|587693|organism=Nannochloropsis oceanica|type=polypeptide|length=66bp
MDLDYEAPFQCLSLDNVLKIFTLLLVEERLLFISSSTSLLTDVTETILTF
LFPFKWVTSLAFLTS*
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mRNA from alignment at scaffold_9:510861..512853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4736 ID=mRNA_4736|Name=jgi.p|Nanoce1779_2|587693|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at scaffold_9:510861..512853- (Nannochloropsis oceanica)
ACAGCACGCCCTAAATATCCATCTGGACTTGGGCCTCAAGATCGTGTTGA
GAACTCTTCATTGTCGCCCATCAAGCTGCAACTCCCTCATACTCGCAGTC
TCCCGCTCATGGACCTGGACTACGAGGCGCCATTCCAATGTCTAAGCTTG
GACAATGTGCTTAAAATCTTTACTTTGCTATTGGTGGAGGAGCGGCTCCT
GTTTATCTCGTCCTCGACGTCATTGCTGACAGATGTCACCGAGACCATCC
TGACCTTTCTGTTTCCCTTCAAGTGGGTGACATCCCTCGCCTTTCTGACA
AGCTGATAGAGATTCTGGAGGCACCAGACTCCTTCTTGATCGGAATCTAT
ACCGAGGGCTCCACGGACTCTTGGGTCCTACCCCAGCTTTCAGACTCCCT
CTTTGTGGTAGACTTGGATCACGACTGTATCGTGGACGCAGAGGGCAAGC
AAGACAAGATTGCAATAATACAAAACTTGCCCTTATTGGAGACCTTGCGC
GAGAAGCTACTGATGGAGTTGGAGCGCGCTGCAGTCACAGTTAAGTCGGC
CGAGGCTCTGCGCGAACGGGATTCCGCGTTTGAATTGCCGGCGGTGCCTG
GGTCGGACCTAGAGGACGGACCGGCGAACATGCCTCATCTGAATCCGGAA
GTTGTTCGGGACGCTTTCTTAGTGTTCATGTGCGAACTGTAAGGAATCTA
CATCAGATTTTTCAACTCACAGGAAGGAAACAATCGGAGCGCGGACGGAG
GCACGATTGGGGATACAACACACAATGGCGTATTTGGCGCATTTGACGTC
TCGGGTTTTGTCGCGTCGGCGGACAAGACCGCTAAGCCGTTATTGGACAA
GATAGTCTTGACGCAGATGTTTGCGGCTTTGGTTCAGCAGCGCACAGAGC
ACAGTCATGCGGTGGACCGGTTGATGTTCTTCGAGACATGTGTGCAGGAA
TTGAAGGAGCGCAAGGATACAGATGTCGTGACAGTCGCGGCCGCCGCTAC
TGGGGGTGCGGGTGGTAGAAGTGGCGGTTTTGGTTCTGAAATCGTGGTGA
ATGGGCGACAGTGCCTCGATGATCTCAGTGTGAGTCCAAAGGGCGCGCCA
TTGTGGACTTCAGATTCGGCTTGTGGATCGCCGTTGCTGATTCACCAGGC
TGTGGCCTCCATGGCCCGGCGCGAAAAACTTCAGATGCAACAACAGCAGC
GAATAGAGCACGCACAGCTACAACACCACGAGGCTTTGATGATTCCAGCC
TCATCGCCGACCGGCACTACCGCTATCAACAGTCCGTCACGGAGGCATCA
CCAGTCTTCGACGGGCTTCTTTGCCGATACGCTTCCCAGTTTCATCACTG
TTCCCGGTCCCAGTGCGGAAGAATGTATGAGGTTGAGCAAAGCTGATGCA
TGTCCTGGGACTTCTGGGGCTGTAAGCAACCAGTTGAGCGTGGTAACACT
GCCATCGCAACCGCAATGCTTCTCATACACGAAATTTCCAATCTTTCTGG
ACAAGGAGTGGATGGCCATGCCGTCCTCTTCCTTGCCACCGATTTTACAT
GAGGTAATGACGCGCCGCGACATTTTTTTGAAAAAGGGAAACCGCATGAT
TCTGGCGCGCTCAGTTTCCGAATGCATGAAGGACTGGCAGGTAGTGAGCA
AACCGATAGGCGGAACCGGCGACAAGGAGATTTACCTGGCATTGCAGATT
TTCGGCATCTCACTTCATGTGTTTGCCCTCGAGGGTCTCGTACAAGGGCC
GACCGCTTAAGATTATCATGCAGGCTATTGGTGTCTTGCAGTTTCTCTTG
GACTTTCAGCTCGAGCGCTACATGGACGAAGCTATGTGGCGCTCCCTCTT
GGTAGCTTGCGGGCGGTGCGGGCACTCGTCCACGCGCAAGATTGCCATTG
CCATCTTTGGGATCATGCGGCGCTCGGGACTAACTATCAACGTCTAAACG
TACGGGCAGTACACTAAAGCCTTGGCAGAGAAGGATGCCACCA
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Coding sequence (CDS) from alignment at scaffold_9:510861..512853-

>mRNA_4736 ID=mRNA_4736|Name=jgi.p|Nanoce1779_2|587693|organism=Nannochloropsis oceanica|type=CDS|length=198bp|location=Sequence derived from alignment at scaffold_9:510861..512853- (Nannochloropsis oceanica)
ATGGACCTGGACTACGAGGCGCCATTCCAATGTCTAAGCTTGGACAATGT
GCTTAAAATCTTTACTTTGCTATTGGTGGAGGAGCGGCTCCTGTTTATCT
CGTCCTCGACGTCATTGCTGACAGATGTCACCGAGACCATCCTGACCTTT
CTGTTTCCCTTCAAGTGGGTGACATCCCTCGCCTTTCTGACAAGCTGA
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Synonyms
Publications