jgi.p|Nanoce1779_2|587692, mRNA_4735 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587692
Unique NamemRNA_4735
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2034
Alignment locationscaffold_9:508852..510885 -

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Properties
Property NameValue
TranscriptId587778
TrackFilteredModels2
ProteinId587692
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:508852..510885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587692gene_4735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587692mRNA_4735-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4735CDS_4735Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4735 ID=mRNA_4735|Name=jgi.p|Nanoce1779_2|587692|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp
GCCTTGGCAGAGAAGGATGCCACCAAGTTCACGGCGACGGCGGCATCGAC
AGTGATGGGTAGGGAAGCAGTAGCGGAAGTTGATGGAAGCGCATCAGAGG
CGAGCAGCGCTTTGAGCAAGGATCAGGTAGAGATCGACGACAGCCCCTGG
CTGGAGGAGCGCGGTCAGGCTTGGTACATGGCGACATGCGAGCCTTCAAC
ATCAGAGACGCTAAAGAGCTGGACGGTCGCGAAAGGTTTCAGAAATCTAC
TTGCGTGCTCTACCATGGCGACTGCGGATTCGAAGAAGCCCGGGGATCAT
CCAGTGTTGCAAAATGGACACGCCTGGACTGGCGGGTTGCGGGATCTATG
CTCTCTGCGCACAATACGACCGTAAGCTCCATCACGTTGGATAGTGCGGG
CGTGATAGGGATGTGGGTGGTCTGTTTGTGTATGAATTGCGAGTACATGC
CCTTGGACGAGGAGATCATGACGCTGCGGCAGGATCTACTGCTAGCCCAT
GCGGTCGATGACCTCGCGAACCACCTTCTTCTCTGCCCTAAGTGTGAAAC
TCCTCTTGTGCCCCGCCTCTACTATGATATCAAGACGTTCCAACACGGTG
TCATGGCTTGCGGTGCAGATGATTCAATTTATAACCACCAGCATCACCAA
AATTTTGGCACGCCTAGTTCCCCAACATCGTCTATCTTCCCGGTCACAGA
AACACTGTCGCAGACTGAAGCAGCAGCGCTGAGCCCCGCGCAGGCTCAAG
TGGCCCGCACAATTGGGAGTATGAGCCCATCTACTGAGGTCGCTGAGGCG
GAATCGGTAGTCCTCTTTTGGACGGTTCGGCAAGCGCGCGCCCTGCCAAT
ATGAGTGCCTGCTCCGTTGCGCCTGCATTGGACGCATCTCTGTCAGCAAG
CGTGACGGATAATTCGGACGGGCTACATTTGCGCGGGGAGGTGTCCGGGC
TGGGTCCAGGGACTTCGGAAGGGGACCATGTGGACTATTTAAGTCCATTC
ACTCTCCATATGCGGCTTGAGAAGCTTTTACTGGAGCATGGGGAGGAGTG
CCTGACCCGGGATTGGGCCCGAGTGCACCAACCAGAGCTGTATTGGAATC
TGGTATGGTTCACCACACGACTGTCGATCCCATTTCCGATCTTGCTAGAC
TCCCTAGATCCTGTTTTGGCCGATACCGCAGTAGCAAACTTCCGTTCGCC
CGAGTGCGAACGTAAGAAGAAGACCCTTCAGTTGCTGAACAGCTGCGGTA
TTTTTCGACAGGACTCGATGGAACGGCTTGGTATGCTCTTCTTCCATGAG
GTGGTGGTGGTTGGCTGGGAGGGAGATGTCGTGCGCAACCGATGCGAAAA
GGTGGAGGTCATGCTGAAGCAGCGCTTGCTCAAACCGCCGCCAAACAGGT
CATCGAGCAATGTCGCCGCCGGGAACAGCGCCATCACCTACCAGCGCTGG
AGTCCTGTCTACCCCCGAGTACTTTGCCTATGCCCCTTCGGCTTTTCTCG
TAAGCGAGACATTGCGGCAGCAGTTTGTCGGCTGGGGGGCAGCAGCAAGC
AGCCCAGTTGAATCCGTGGATGCAATTGGGCCCTTGACCGTCGACCAGCT
ATTCCCGAACGTATCAGCGCAGGAGCTGGAAGCTATCAACGAACTCTGCA
AGACGCTGTTGGCCAAGGATGGTCCCGGTTTGAAGGAGGTCATCTCCCAG
TTCTATACCCTCAAGCACAAGCAGGGAGGTTGGGCCTCTGAGGCTATCTT
AGGCTCCTCTTACCGAGTCTTGCTGAAGCTGGCGGCCAACTTTCACGTCA
AGAAGCTGCACAACATCGCGCCGATCTCAAACCTGATGGCGAACCCAGGT
TTGGAGCACGAGTATACCACCGCTGTCATGAAGTTAGGCGACCGATTCAT
GCGAGACAATGTGGGAAAGGATGAGCGGCAGTTGTTGGCAGAATTGCCGA
AACGGGACGCTATCAAGTTCCGCTCAGTGTTTGGACATCTATATTGAGAC
AACGCACGTGTATAAAATGGCAGCAATTATGCCT
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protein sequence of jgi.p|Nanoce1779_2|587692

>mRNA_4735-protein ID=mRNA_4735-protein|Name=jgi.p|Nanoce1779_2|587692|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSACSVAPALDASLSASVTDNSDGLHLRGEVSGLGPGTSEGDHVDYLSPF
TLHMRLEKLLLEHGEECLTRDWARVHQPELYWNLVWFTTRLSIPFPILLD
SLDPVLADTAVANFRSPECERKKKTLQLLNSCGIFRQDSMERLGMLFFHE
VVVVGWEGDVVRNRCEKVEVMLKQRLLKPPPNRSSSNVAAGNSAITYQRW
SPVYPRVLCLCPFGFSRKRDIAAAVCRLGGSSKQPS*
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mRNA from alignment at scaffold_9:508852..510885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4735 ID=mRNA_4735|Name=jgi.p|Nanoce1779_2|587692|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp|location=Sequence derived from alignment at scaffold_9:508852..510885- (Nannochloropsis oceanica)
GCCTTGGCAGAGAAGGATGCCACCAAGTTCACGGCGACGGCGGCATCGAC
AGTGATGGGTAGGGAAGCAGTAGCGGAAGTTGATGGAAGCGCATCAGAGG
CGAGCAGCGCTTTGAGCAAGGATCAGGTAGAGATCGACGACAGCCCCTGG
CTGGAGGAGCGCGGTCAGGCTTGGTACATGGCGACATGCGAGCCTTCAAC
ATCAGAGACGCTAAAGAGCTGGACGGTCGCGAAAGGTTTCAGAAATCTAC
TTGCGTGCTCTACCATGGCGACTGCGGATTCGAAGAAGCCCGGGGATCAT
CCAGTGTTGCAAAATGGACACGCCTGGACTGGCGGGTTGCGGGATCTATG
CTCTCTGCGCACAATACGACCGTAAGCTCCATCACGTTGGATAGTGCGGG
CGTGATAGGGATGTGGGTGGTCTGTTTGTGTATGAATTGCGAGTACATGC
CCTTGGACGAGGAGATCATGACGCTGCGGCAGGATCTACTGCTAGCCCAT
GCGGTCGATGACCTCGCGAACCACCTTCTTCTCTGCCCTAAGTGTGAAAC
TCCTCTTGTGCCCCGCCTCTACTATGATATCAAGACGTTCCAACACGGTG
TCATGGCTTGCGGTGCAGATGATTCAATTTATAACCACCAGCATCACCAA
AATTTTGGCACGCCTAGTTCCCCAACATCGTCTATCTTCCCGGTCACAGA
AACACTGTCGCAGACTGAAGCAGCAGCGCTGAGCCCCGCGCAGGCTCAAG
TGGCCCGCACAATTGGGAGTATGAGCCCATCTACTGAGGTCGCTGAGGCG
GAATCGGTAGTCCTCTTTTGGACGGTTCGGCAAGCGCGCGCCCTGCCAAT
ATGAGTGCCTGCTCCGTTGCGCCTGCATTGGACGCATCTCTGTCAGCAAG
CGTGACGGATAATTCGGACGGGCTACATTTGCGCGGGGAGGTGTCCGGGC
TGGGTCCAGGGACTTCGGAAGGGGACCATGTGGACTATTTAAGTCCATTC
ACTCTCCATATGCGGCTTGAGAAGCTTTTACTGGAGCATGGGGAGGAGTG
CCTGACCCGGGATTGGGCCCGAGTGCACCAACCAGAGCTGTATTGGAATC
TGGTATGGTTCACCACACGACTGTCGATCCCATTTCCGATCTTGCTAGAC
TCCCTAGATCCTGTTTTGGCCGATACCGCAGTAGCAAACTTCCGTTCGCC
CGAGTGCGAACGTAAGAAGAAGACCCTTCAGTTGCTGAACAGCTGCGGTA
TTTTTCGACAGGACTCGATGGAACGGCTTGGTATGCTCTTCTTCCATGAG
GTGGTGGTGGTTGGCTGGGAGGGAGATGTCGTGCGCAACCGATGCGAAAA
GGTGGAGGTCATGCTGAAGCAGCGCTTGCTCAAACCGCCGCCAAACAGGT
CATCGAGCAATGTCGCCGCCGGGAACAGCGCCATCACCTACCAGCGCTGG
AGTCCTGTCTACCCCCGAGTACTTTGCCTATGCCCCTTCGGCTTTTCTCG
TAAGCGAGACATTGCGGCAGCAGTTTGTCGGCTGGGGGGCAGCAGCAAGC
AGCCCAGTTGAATCCGTGGATGCAATTGGGCCCTTGACCGTCGACCAGCT
ATTCCCGAACGTATCAGCGCAGGAGCTGGAAGCTATCAACGAACTCTGCA
AGACGCTGTTGGCCAAGGATGGTCCCGGTTTGAAGGAGGTCATCTCCCAG
TTCTATACCCTCAAGCACAAGCAGGGAGGTTGGGCCTCTGAGGCTATCTT
AGGCTCCTCTTACCGAGTCTTGCTGAAGCTGGCGGCCAACTTTCACGTCA
AGAAGCTGCACAACATCGCGCCGATCTCAAACCTGATGGCGAACCCAGGT
TTGGAGCACGAGTATACCACCGCTGTCATGAAGTTAGGCGACCGATTCAT
GCGAGACAATGTGGGAAAGGATGAGCGGCAGTTGTTGGCAGAATTGCCGA
AACGGGACGCTATCAAGTTCCGCTCAGTGTTTGGACATCTATATTGAGAC
AACGCACGTGTATAAAATGGCAGCAATTATGCCT
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Coding sequence (CDS) from alignment at scaffold_9:508852..510885-

>mRNA_4735 ID=mRNA_4735|Name=jgi.p|Nanoce1779_2|587692|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_9:508852..510885- (Nannochloropsis oceanica)
ATGAGTGCCTGCTCCGTTGCGCCTGCATTGGACGCATCTCTGTCAGCAAG
CGTGACGGATAATTCGGACGGGCTACATTTGCGCGGGGAGGTGTCCGGGC
TGGGTCCAGGGACTTCGGAAGGGGACCATGTGGACTATTTAAGTCCATTC
ACTCTCCATATGCGGCTTGAGAAGCTTTTACTGGAGCATGGGGAGGAGTG
CCTGACCCGGGATTGGGCCCGAGTGCACCAACCAGAGCTGTATTGGAATC
TGGTATGGTTCACCACACGACTGTCGATCCCATTTCCGATCTTGCTAGAC
TCCCTAGATCCTGTTTTGGCCGATACCGCAGTAGCAAACTTCCGTTCGCC
CGAGTGCGAACGTAAGAAGAAGACCCTTCAGTTGCTGAACAGCTGCGGTA
TTTTTCGACAGGACTCGATGGAACGGCTTGGTATGCTCTTCTTCCATGAG
GTGGTGGTGGTTGGCTGGGAGGGAGATGTCGTGCGCAACCGATGCGAAAA
GGTGGAGGTCATGCTGAAGCAGCGCTTGCTCAAACCGCCGCCAAACAGGT
CATCGAGCAATGTCGCCGCCGGGAACAGCGCCATCACCTACCAGCGCTGG
AGTCCTGTCTACCCCCGAGTACTTTGCCTATGCCCCTTCGGCTTTTCTCG
TAAGCGAGACATTGCGGCAGCAGTTTGTCGGCTGGGGGGCAGCAGCAAGC
AGCCCAGTTGA
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Synonyms
Publications