jgi.p|Nanoce1779_2|587689, mRNA_4734 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587689
Unique NamemRNA_4734
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1114
Alignment locationscaffold_9:507660..508773 +

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Properties
Property NameValue
TranscriptId587775
TrackFilteredModels2
ProteinId587689
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:507660..508773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587689gene_4734Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587689mRNA_4734-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4734CDS_4734Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4734 ID=mRNA_4734|Name=jgi.p|Nanoce1779_2|587689|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
CAGCAGCCATCACTTACTATGGCGACTACCGCACTTACAATCACCAAGCC
CGACGACTTTCACCATCACTTCCGAGATGGAGAAGCCTTGGAGGCTCTTG
TACCCTTGGTTGCCTCTCGATTTCGCCGCGCGATCGCGATGCCCAACCTG
AAGCCCCCCGTCACCACCACAGCCCAGGCCCTTGCTTATCGGGAGCGCCT
GATGGCCGCCGTGCCAGCGGGCGTAGACTTCACGCCCTTGATGACACTCT
ACCTCACAGACCAAACTACAGCGGAGGAGATCTATGCCGCCCGAGACTCG
GGCGCTGTGTACGCCGTCAAGTTGTACCCCGCGGGCGCTACGACCAACTC
GGACTCGGGCGTCACAGACATGCAGACTATCCGCCCCGCGCTTGAGGCCA
TGGCCCAGGTGGGCATGCCCTTGCTCGTGCATAGTGAAGTAACGGATGCA
AATGTGGACATTTTTGACCGTGAGGCTGCGTTTGTGGTGAGTGTTTTGGG
GCCCTTGGTAAGGGAAAATCCAGGCTTGAAGGTGGTGATGGAGCATATTA
CCACTTCGGAGGGTGTGGACTTTGTCATGGCGTGCGGACCCAACGTGGGG
GCCACTATTACGCCGCAGCACCTTTTATACAATCGTAATGCCATCTTCCA
AGGTGGGCTTCAACCTCATATGTATTGCTTGCCTGTTCTGAAGCACGAGC
GGCACCGTCAAGCCTTGCTCCGCGCGATTGCTAGTGGCTCGCCTAAATTC
TTCCTAGGCACGGATAGCGCACCGCATCCCAAGACTGCTAAGGAGACTTC
GTGTGGATGCGCGGGTTGTTTCTCGGCATTCGCAGGACTGGAGTTATATG
CGGAAGTGTTTGAGTCCTTGGGCGTGATGGACAAGTTCGAATCATTCACG
TCCAAGAACGGTGCGGCATTTTACGGCTTGCCCGAGAACCAAGAGAAGCT
GACATTGCGCAGAGAACCGTGGACTGTTCCTGCTACGTACCCACTGGGCA
AAGACGTTGCGGTAGTTCCCTTGAAGGCTGGAGAAGAAATGGCGTGGGCC
GTAAAACAGGAATAAACAAATACGACGAGATGCTCTTTCGAAAGAAACAA
GAACACATTTGTTA
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protein sequence of jgi.p|Nanoce1779_2|587689

>mRNA_4734-protein ID=mRNA_4734-protein|Name=jgi.p|Nanoce1779_2|587689|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MATTALTITKPDDFHHHFRDGEALEALVPLVASRFRRAIAMPNLKPPVTT
TAQALAYRERLMAAVPAGVDFTPLMTLYLTDQTTAEEIYAARDSGAVYAV
KLYPAGATTNSDSGVTDMQTIRPALEAMAQVGMPLLVHSEVTDANVDIFD
REAAFVVSVLGPLVRENPGLKVVMEHITTSEGVDFVMACGPNVGATITPQ
HLLYNRNAIFQGGLQPHMYCLPVLKHERHRQALLRAIASGSPKFFLGTDS
APHPKTAKETSCGCAGCFSAFAGLELYAEVFESLGVMDKFESFTSKNGAA
FYGLPENQEKLTLRREPWTVPATYPLGKDVAVVPLKAGEEMAWAVKQE*
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mRNA from alignment at scaffold_9:507660..508773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4734 ID=mRNA_4734|Name=jgi.p|Nanoce1779_2|587689|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp|location=Sequence derived from alignment at scaffold_9:507660..508773+ (Nannochloropsis oceanica)
CAGCAGCCATCACTTACTATGGCGACTACCGCACTTACAATCACCAAGCC
CGACGACTTTCACCATCACTTCCGAGATGGAGAAGCCTTGGAGGCTCTTG
TACCCTTGGTTGCCTCTCGATTTCGCCGCGCGATCGCGATGCCCAACCTG
AAGCCCCCCGTCACCACCACAGCCCAGGCCCTTGCTTATCGGGAGCGCCT
GATGGCCGCCGTGCCAGCGGGCGTAGACTTCACGCCCTTGATGACACTCT
ACCTCACAGACCAAACTACAGCGGAGGAGATCTATGCCGCCCGAGACTCG
GGCGCTGTGTACGCCGTCAAGTTGTACCCCGCGGGCGCTACGACCAACTC
GGACTCGGGCGTCACAGACATGCAGACTATCCGCCCCGCGCTTGAGGCCA
TGGCCCAGGTGGGCATGCCCTTGCTCGTGCATAGTGAAGTAACGGATGCA
AATGTGGACATTTTTGACCGTGAGGCTGCGTTTGTGGTGAGTGTTTTGGG
GCCCTTGGTAAGGGAAAATCCAGGCTTGAAGGTGGTGATGGAGCATATTA
CCACTTCGGAGGGTGTGGACTTTGTCATGGCGTGCGGACCCAACGTGGGG
GCCACTATTACGCCGCAGCACCTTTTATACAATCGTAATGCCATCTTCCA
AGGTGGGCTTCAACCTCATATGTATTGCTTGCCTGTTCTGAAGCACGAGC
GGCACCGTCAAGCCTTGCTCCGCGCGATTGCTAGTGGCTCGCCTAAATTC
TTCCTAGGCACGGATAGCGCACCGCATCCCAAGACTGCTAAGGAGACTTC
GTGTGGATGCGCGGGTTGTTTCTCGGCATTCGCAGGACTGGAGTTATATG
CGGAAGTGTTTGAGTCCTTGGGCGTGATGGACAAGTTCGAATCATTCACG
TCCAAGAACGGTGCGGCATTTTACGGCTTGCCCGAGAACCAAGAGAAGCT
GACATTGCGCAGAGAACCGTGGACTGTTCCTGCTACGTACCCACTGGGCA
AAGACGTTGCGGTAGTTCCCTTGAAGGCTGGAGAAGAAATGGCGTGGGCC
GTAAAACAGGAATAAACAAATACGACGAGATGCTCTTTCGAAAGAAACAA
GAACACATTTGTTA
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Coding sequence (CDS) from alignment at scaffold_9:507660..508773+

>mRNA_4734 ID=mRNA_4734|Name=jgi.p|Nanoce1779_2|587689|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_9:507660..508773+ (Nannochloropsis oceanica)
ATGGCGACTACCGCACTTACAATCACCAAGCCCGACGACTTTCACCATCA
CTTCCGAGATGGAGAAGCCTTGGAGGCTCTTGTACCCTTGGTTGCCTCTC
GATTTCGCCGCGCGATCGCGATGCCCAACCTGAAGCCCCCCGTCACCACC
ACAGCCCAGGCCCTTGCTTATCGGGAGCGCCTGATGGCCGCCGTGCCAGC
GGGCGTAGACTTCACGCCCTTGATGACACTCTACCTCACAGACCAAACTA
CAGCGGAGGAGATCTATGCCGCCCGAGACTCGGGCGCTGTGTACGCCGTC
AAGTTGTACCCCGCGGGCGCTACGACCAACTCGGACTCGGGCGTCACAGA
CATGCAGACTATCCGCCCCGCGCTTGAGGCCATGGCCCAGGTGGGCATGC
CCTTGCTCGTGCATAGTGAAGTAACGGATGCAAATGTGGACATTTTTGAC
CGTGAGGCTGCGTTTGTGGTGAGTGTTTTGGGGCCCTTGGTAAGGGAAAA
TCCAGGCTTGAAGGTGGTGATGGAGCATATTACCACTTCGGAGGGTGTGG
ACTTTGTCATGGCGTGCGGACCCAACGTGGGGGCCACTATTACGCCGCAG
CACCTTTTATACAATCGTAATGCCATCTTCCAAGGTGGGCTTCAACCTCA
TATGTATTGCTTGCCTGTTCTGAAGCACGAGCGGCACCGTCAAGCCTTGC
TCCGCGCGATTGCTAGTGGCTCGCCTAAATTCTTCCTAGGCACGGATAGC
GCACCGCATCCCAAGACTGCTAAGGAGACTTCGTGTGGATGCGCGGGTTG
TTTCTCGGCATTCGCAGGACTGGAGTTATATGCGGAAGTGTTTGAGTCCT
TGGGCGTGATGGACAAGTTCGAATCATTCACGTCCAAGAACGGTGCGGCA
TTTTACGGCTTGCCCGAGAACCAAGAGAAGCTGACATTGCGCAGAGAACC
GTGGACTGTTCCTGCTACGTACCCACTGGGCAAAGACGTTGCGGTAGTTC
CCTTGAAGGCTGGAGAAGAAATGGCGTGGGCCGTAAAACAGGAATAA
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Synonyms
Publications