jgi.p|Nanoce1779_2|625399, mRNA_4733 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625399
Unique Name	mRNA_4733
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2183
Alignment location	scaffold_9:504710..506920 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625485
Track	FilteredModels2
ProteinId	625399

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:504710..506920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625399	gene_4733	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625399	mRNA_4733-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4733	CDS_4733	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:504710..506920+
coding sequence from alignment at scaffold_9:504710..506920+

mRNA sequence

>mRNA_4733 ID=mRNA_4733|Name=jgi.p|Nanoce1779_2|625399|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp
CAGATCTCGACCGCCTCACAACTACGGCCACCATGGCACCCGCCCGCGAG
GTGACCCCCGGAACAGTCGCCAGGATCCACGCGGGTCAAGTCAAGTTTAA
TCCTTGCGTGCAAGTCGTGGACGTGAAGAAAATTCAGTCCAATCCGGGTC
AGAGCACGGGGCAAGACCGCTACCGGCTCATTATCTCAGATGGTACCCAC
TACCAACAAGCCATGCTCGCCACGCAGCTGAACGAGCTGGTCATTTCCAA
CCAGATCGAGACATATTGTCTAATCTCTTTGGTGGACTTCATCTGCAACG
AAGTTCAAAACAAGAAAATTGTCATCATCCTTAAATGCGAGGTTGTAGAT
GCCTCGCTTGGCTACAAAATCGGGGATCCGGTCGAGTATGGCAAGGCCGG
CGCTGGCGGCGGCGGTGGAGGAGGGAGAGTAGCAGCAGCTCCCTATCAGT
CAAAGCAGGAGGCTCCTTCCCTCAACACCATAGCCGGTGCGTCTGTCCCC
TACAAGCCCGCTGATCCCTCCCACGGAGGCGGCGGTGTGAGCGGTGGTGG
GTATCAATCTAACCCTTACGGGGGAGGGGGAGGATATCGTGCTCCTGCCG
GTCCGGTGGTGCGTGCACCGATCAACCAGTCCATCATTCCTATTGGAGAC
TTGAACCCGTATCAGAACCGGTGGGTGATCAAGGCGCGCGTCACGGCCAA
GACGGACATCAAGAGGTGGAGCAATGCCAAAGGAGAGGGGACGCTCTTTT
CGATCGACATGCTCGATGAAGGTGGGGGAGAGATGCGCGCCACCTTTTTC
AAGGAGGCATGTGAGAAGTTTTACCCGATCTTGGAGCAGGGTCATGTCTA
TACGTTCTCAGGGGGGAAGCTTAAGGTGGCTCAAAGGCAGTACAGCTCGA
TTCGGAACACCTACGAAGCAACATTTGACAGCAACTCGGAGATTTTGGAG
GTACCGGATGACAAGAACATTCTAACGGCTGTGTATGCGTTCAAAAAAAT
TGAGGAGTTGGAGCAGACACCGCCGAATTCCACCATTGACTTGATTGGTG
TGGTGAAGGCATTTTCACCGTTGAGCACCATAACGACCAAAAAGGACGGC
CGCGAGGTGGCGAAGCGCGAGTTGACGATTTGCGATGACTCGGGGACGGA
GGTCCGCTTGACATTGTGGGGGGATAAGGCGAGTAACAATCCGGAGCAGT
GGGAAAATCACCCAATTGTGGCGTTCAAGGGTCTTAAGGTGTCTGACTAC
AATGGGCGCTCGCTCGGGACCATGCCTGCGTCACAGCTGGCGGTTGCGCC
GGATCTGCCAGAGGCCCACACTTTGCACCATTGGTGGCATGCCACGGGCG
CGACGTCGACGACTACGTCGATCTCGTCAGGGGGCGGGGGAGGGGGGGCT
GGAGGGGGGGGGATTAAGGAGGAGCAATTGGGCTTTGGTGAGAAGCCTGA
TTACTTGGATGTGAAGGCGACGTTGACTTACATTAAGAGTGATCCGGATC
CGTGGTATAAGAGTTGTACAAGCCCGGAGTGTAAGCGAAAGGTGACTGAG
CAGATGAATTCGTACTATTGTGAAAAGTGCCAGAAGGAGATGCCGGAGTG
TGCGTATCGTTATATCTTATCCTTGTCTGCGACTGATCACTCCGGGTCTG
TCTACTTCTCGTGCTTTGATGACCATGCAAATGTGTTGTTGGGCAAGTCG
GCGGAGGAGCTTCATTCGTTCAAGTCTTCTGACATGCAAGCCCGTTACGA
TGCGACCTTCCAAGAGGCCAACTTTGGGACGCATATTTTCCGTTTACGTG
TAAAGGCCGAGCAGGTAAATGATGAGCAGCGCGTGAAGAATACGGTGATG
AACGTTCGTCCTGTGAACCTGGTGCAGGAGAGCCGGGATCTAATTGCGGC
GATCAAGGCGTATAATTAGAGCGAAGGAGGGAGTGTTGGAGGAAAGGCGG
AGGGACGCGCGATGTGACAAAGCACTTAGTTAAGGTAAAAGAAATAAAAG
ATGAAACGATGAAAAGAGTTCGAGATGCGGAAAAAGAGGATCCATACATG
GAGAAATTGGATGCGTGAATTGTGTACCGTAGGGGAACGAAATGACGAGG
AAAGTAGAAAGATGAAGCACGGGCTCGACGTTGAGTTAGATGAGACGCAG
TAGGTCAAAAAGAAGCAAGAAAGACAAGGGTGC

protein sequence of jgi.p|Nanoce1779_2|625399

>mRNA_4733-protein ID=mRNA_4733-protein|Name=jgi.p|Nanoce1779_2|625399|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MAPAREVTPGTVARIHAGQVKFNPCVQVVDVKKIQSNPGQSTGQDRYRLI
ISDGTHYQQAMLATQLNELVISNQIETYCLISLVDFICNEVQNKKIVIIL
KCEVVDASLGYKIGDPVEYGKAGAGGGGGGGRVAAAPYQSKQEAPSLNTI
AGASVPYKPADPSHGGGGVSGGGYQSNPYGGGGGYRAPAGPVVRAPINQS
IIPIGDLNPYQNRWVIKARVTAKTDIKRWSNAKGEGTLFSIDMLDEGGGE
MRATFFKEACEKFYPILEQGHVYTFSGGKLKVAQRQYSSIRNTYEATFDS
NSEILEVPDDKNILTAVYAFKKIEELEQTPPNSTIDLIGVVKAFSPLSTI
TTKKDGREVAKRELTICDDSGTEVRLTLWGDKASNNPEQWENHPIVAFKG
LKVSDYNGRSLGTMPASQLAVAPDLPEAHTLHHWWHATGATSTTTSISSG
GGGGGAGGGGIKEEQLGFGEKPDYLDVKATLTYIKSDPDPWYKSCTSPEC
KRKVTEQMNSYYCEKCQKEMPECAYRYILSLSATDHSGSVYFSCFDDHAN
VLLGKSAEELHSFKSSDMQARYDATFQEANFGTHIFRLRVKAEQVNDEQR
VKNTVMNVRPVNLVQESRDLIAAIKAYN*

mRNA from alignment at scaffold_9:504710..506920+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4733 ID=mRNA_4733|Name=jgi.p|Nanoce1779_2|625399|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp|location=Sequence derived from alignment at scaffold_9:504710..506920+ (Nannochloropsis oceanica)
CAGATCTCGACCGCCTCACAACTACGGCCACCATGGCACCCGCCCGCGAG
GTGACCCCCGGAACAGTCGCCAGGATCCACGCGGGTCAAGTCAAGTTTAA
TCCTTGCGTGCAAGTCGTGGACGTGAAGAAAATTCAGTCCAATCCGGGTC
AGAGCACGGGGCAAGACCGCTACCGGCTCATTATCTCAGATGGTACCCAC
TACCAACAAGCCATGCTCGCCACGCAGCTGAACGAGCTGGTCATTTCCAA
CCAGATCGAGACATATTGTCTAATCTCTTTGGTGGACTTCATCTGCAACG
AAGTTCAAAACAAGAAAATTGTCATCATCCTTAAATGCGAGGTTGTAGAT
GCCTCGCTTGGCTACAAAATCGGGGATCCGGTCGAGTATGGCAAGGCCGG
CGCTGGCGGCGGCGGTGGAGGAGGGAGAGTAGCAGCAGCTCCCTATCAGT
CAAAGCAGGAGGCTCCTTCCCTCAACACCATAGCCGGTGCGTCTGTCCCC
TACAAGCCCGCTGATCCCTCCCACGGAGGCGGCGGTGTGAGCGGTGGTGG
GTATCAATCTAACCCTTACGGGGGAGGGGGAGGATATCGTGCTCCTGCCG
GTCCGGTGGTGCGTGCACCGATCAACCAGTCCATCATTCCTATTGGAGAC
TTGAACCCGTATCAGAACCGGTGGGTGATCAAGGCGCGCGTCACGGCCAA
GACGGACATCAAGAGGTGGAGCAATGCCAAAGGAGAGGGGACGCTCTTTT
CGATCGACATGCTCGATGAAGGTGGGGGAGAGATGCGCGCCACCTTTTTC
AAGGAGGCATGTGAGAAGTTTTACCCGATCTTGGAGCAGGGTCATGTCTA
TACGTTCTCAGGGGGGAAGCTTAAGGTGGCTCAAAGGCAGTACAGCTCGA
TTCGGAACACCTACGAAGCAACATTTGACAGCAACTCGGAGATTTTGGAG
GTACCGGATGACAAGAACATTCTAACGGCTGTGTATGCGTTCAAAAAAAT
TGAGGAGTTGGAGCAGACACCGCCGAATTCCACCATTGACTTGATTGGTG
TGGTGAAGGCATTTTCACCGTTGAGCACCATAACGACCAAAAAGGACGGC
CGCGAGGTGGCGAAGCGCGAGTTGACGATTTGCGATGACTCGGGGACGGA
GGTCCGCTTGACATTGTGGGGGGATAAGGCGAGTAACAATCCGGAGCAGT
GGGAAAATCACCCAATTGTGGCGTTCAAGGGTCTTAAGGTGTCTGACTAC
AATGGGCGCTCGCTCGGGACCATGCCTGCGTCACAGCTGGCGGTTGCGCC
GGATCTGCCAGAGGCCCACACTTTGCACCATTGGTGGCATGCCACGGGCG
CGACGTCGACGACTACGTCGATCTCGTCAGGGGGCGGGGGAGGGGGGGCT
GGAGGGGGGGGGGTTCGCCGATCGGAAGGTGTTGGCACAGATTAAGGAGG
AGCAATTGGGCTTTGGTGAGAAGCCTGATTACTTGGATGTGAAGGCGACG
TTGACTTACATTAAGAGTGATCCGGATCCGTGGTATAAGAGTTGTACAAG
CCCGGAGTGTAAGCGAAAGGTGACTGAGCAGATGAATTCGTACTATTGTG
AAAAGTGCCAGAAGGAGATGCCGGAGTGTGCGTATCGTTATATCTTATCC
TTGTCTGCGACTGATCACTCCGGGTCTGTCTACTTCTCGTGCTTTGATGA
CCATGCAAATGTGTTGTTGGGCAAGTCGGCGGAGGAGCTTCATTCGTTCA
AGTCTTCTGACATGCAAGCCCGTTACGATGCGACCTTCCAAGAGGCCAAC
TTTGGGACGCATATTTTCCGTTTACGTGTAAAGGCCGAGCAGGTAAATGA
TGAGCAGCGCGTGAAGAATACGGTGATGAACGTTCGTCCTGTGAACCTGG
TGCAGGAGAGCCGGGATCTAATTGCGGCGATCAAGGCGTATAATTAGAGC
GAAGGAGGGAGTGTTGGAGGAAAGGCGGAGGGACGCGCGATGTGACAAAG
CACTTAGTTAAGGTAAAAGAAATAAAAGATGAAACGATGAAAAGAGTTCG
AGATGCGGAAAAAGAGGATCCATACATGGAGAAATTGGATGCGTGAATTG
TGTACCGTAGGGGAACGAAATGACGAGGAAAGTAGAAAGATGAAGCACGG
GCTCGACGTTGAGTTAGATGAGACGCAGTAGGTCAAAAAGAAGCAAGAAA
GACAAGGGTGC

Coding sequence (CDS) from alignment at scaffold_9:504710..506920+

>mRNA_4733 ID=mRNA_4733|Name=jgi.p|Nanoce1779_2|625399|organism=Nannochloropsis oceanica|type=CDS|length=3774bp|location=Sequence derived from alignment at scaffold_9:504710..506920+ (Nannochloropsis oceanica)
ATGGCACCCGCCCGCGAGGTGACCCCCGGAACAGTCGCCAGGATCCACGC
GGGTCAAGTCAAGTTTAATCCTTGCGTGCAAGTCGTGGACGTGAAGAAAA
TTCAGTCCAATCCGGGTCAGAGCACGGGGCAAGACCGCTACCGGCTCATT
ATCTCAGATGGTACCCACTACCAACAAGCCATGCTCGCCACGCAGCTGAA
CGAGCTGGTCATTTCCAACCAGATCGAGACATATTGTCTAATCTCTTTGG
TGGACTTCATCTGCAACGAAGTTCAAAACAAGAAAATTGTCATCATCCTT
AAATGCGAGGTTGTAGATGCCTCGCTTGGCTACAAAATCGGGGATCCGGT
CGAGTATGGCAAGGCCGGCGCTGGCGGCGGCGGTGGAGGAGGGAGAGTAG
CAGCAGCTCCCTATCAGTCAAAGCAGGAGGCTCCTTCCCTCAACACCATA
GCCGGTGCGTCTGTCCCCTACAAGCCCGCTGATCCCTCCCACGGAGGCGG
CGGTGTGAGCGGTGGTGGGTATCAATCTAACCCTTACGGGGGAGGGGGAG
GATATCGTGCTCCTGCCGGTCCGGTGGTGCGTGCACCGATCAACCAGTCC
ATCATTCCTATTGGAGACTTGAACCCGTATCAGAACCGGTGGGTGATCAA
GGCGCGCGTCACGGCCAAGACGGACATCAAGAGGTGGAGCAATGCCAAAG
GAGAGGGGACGCTCTTTTCGATCGACATGCTCGATGAAGGTGGGGGAGAG
ATGCGCGCCACCTTTTTCAAGGAGGCATGTGAGAAGTTTTACCCGATCTT
GGAGCAGGGTCATGTCTATACGTTCTCAGGGGGGAAGCTTAAGGTGGCTC
AAAGGCAGTACAGCTCGATTCGGAACACCTACGAAGCAACATTTGACAGC
AACTCGGAGATTTTGGAGGTACCGGATGACAAGAACATTCTAACGGCTGT
GTATGCGTTCAAAAAAATTGAGGAGTTGGAGCAGACACCGCCGAATTCCA
CCATTGACTTGATTGGTGTGGTGAAGGCATTTTCACCGTTGAGCACCATA
ACGACCAAAAAGGACGGCCGCGAGGTGGCGAAGCGCGAGTTGACGATTTG
CGATGACTCGGGGACGGAGGTCCGCTTGACATTGTGGGGGGATAAGGCGA
GTAACAATCCGGAGCAGTGGGAAAATCACCCAATTGTGGCGTTCAAGGGT
CTTAAGGTGTCTGACTACAATGGGCGCTCGCTCGGGACCATGCCTGCGTC
ACAGCTGGCGGTTGCGCCGGATCTGCCAGAGGCCCACACTTTGCACCATT
GGTGGCATGCCACGGGCGCGACGTCGACGACTACGTCGATCTCGTCAGGG
GGCGGGGGAGGGGGGGCTGGAGGGGGGGGGATTAAGGAGGAGCAATTGGG
CTTTGGTGAGAAGCCTGATTACTTGGATGTGAAGGCGACGTTGACTTACA
TTAAGAGTGATCCGGATCCGTGGTATAAGAGTTGTACAAGCCCGGAGTGT
AAGCGAAAGGTGACTGAGCAGATGAATTCGTACTATTGTGAAAAGTGCCA
GAAGGAGATGCCGGAGTGTGCGTATCGTTATATCTTATCCTTGTCTGCGA
CTGATCACTCCGGGTCTGTCTACTTCTCGTGCTTTGATGACCATGCAAAT
GTGTTGTTGGGCAAGTCGGCGGAGGAGCTTCATTCGTTCAAGTCTTCTGA
CATGCAAGCCCGTTACGATGCGACCTTCCAAGAGGCCAACTTTGGGACGC
ATATTTTCCGTTTACGTGTAAAGGCCGAGCAGGTAAATGATGAGCAGCGC
GTGAAGAATACGGTGATGAACGTTCGTCCTGTGAACCTGGTGCAGGAGAG
CCGGGATCTAATTGCGGCGATCAAGGCGTATAATTAGATGGCACCCGCCC
GCGAGGTGACCCCCGGAACAGTCGCCAGGATCCACGCGGGTCAAGTCAAG
TTTAATCCTTGCGTGCAAGTCGTGGACGTGAAGAAAATTCAGTCCAATCC
GGGTCAGAGCACGGGGCAAGACCGCTACCGGCTCATTATCTCAGATGGTA
CCCACTACCAACAAGCCATGCTCGCCACGCAGCTGAACGAGCTGGTCATT
TCCAACCAGATCGAGACATATTGTCTAATCTCTTTGGTGGACTTCATCTG
CAACGAAGTTCAAAACAAGAAAATTGTCATCATCCTTAAATGCGAGGTTG
TAGATGCCTCGCTTGGCTACAAAATCGGGGATCCGGTCGAGTATGGCAAG
GCCGGCGCTGGCGGCGGCGGTGGAGGAGGGAGAGTAGCAGCAGCTCCCTA
TCAGTCAAAGCAGGAGGCTCCTTCCCTCAACACCATAGCCGGTGCGTCTG
TCCCCTACAAGCCCGCTGATCCCTCCCACGGAGGCGGCGGTGTGAGCGGT
GGTGGGTATCAATCTAACCCTTACGGGGGAGGGGGAGGATATCGTGCTCC
TGCCGGTCCGGTGGTGCGTGCACCGATCAACCAGTCCATCATTCCTATTG
GAGACTTGAACCCGTATCAGAACCGGTGGGTGATCAAGGCGCGCGTCACG
GCCAAGACGGACATCAAGAGGTGGAGCAATGCCAAAGGAGAGGGGACGCT
CTTTTCGATCGACATGCTCGATGAAGGTGGGGGAGAGATGCGCGCCACCT
TTTTCAAGGAGGCATGTGAGAAGTTTTACCCGATCTTGGAGCAGGGTCAT
GTCTATACGTTCTCAGGGGGGAAGCTTAAGGTGGCTCAAAGGCAGTACAG
CTCGATTCGGAACACCTACGAAGCAACATTTGACAGCAACTCGGAGATTT
TGGAGGTACCGGATGACAAGAACATTCTAACGGCTGTGTATGCGTTCAAA
AAAATTGAGGAGTTGGAGCAGACACCGCCGAATTCCACCATTGACTTGAT
TGGTGTGGTGAAGGCATTTTCACCGTTGAGCACCATAACGACCAAAAAGG
ACGGCCGCGAGGTGGCGAAGCGCGAGTTGACGATTTGCGATGACTCGGGG
ACGGAGGTCCGCTTGACATTGTGGGGGGATAAGGCGAGTAACAATCCGGA
GCAGTGGGAAAATCACCCAATTGTGGCGTTCAAGGGTCTTAAGGTGTCTG
ACTACAATGGGCGCTCGCTCGGGACCATGCCTGCGTCACAGCTGGCGGTT
GCGCCGGATCTGCCAGAGGCCCACACTTTGCACCATTGGTGGCATGCCAC
GGGCGCGACGTCGACGACTACGTCGATCTCGTCAGGGGGCGGGGGAGGGG
GGGCTGGAGGGGGGGGGATTAAGGAGGAGCAATTGGGCTTTGGTGAGAAG
CCTGATTACTTGGATGTGAAGGCGACGTTGACTTACATTAAGAGTGATCC
GGATCCGTGGTATAAGAGTTGTACAAGCCCGGAGTGTAAGCGAAAGGTGA
CTGAGCAGATGAATTCGTACTATTGTGAAAAGTGCCAGAAGGAGATGCCG
GAGTGTGCGTATCGTTATATCTTATCCTTGTCTGCGACTGATCACTCCGG
GTCTGTCTACTTCTCGTGCTTTGATGACCATGCAAATGTGTTGTTGGGCA
AGTCGGCGGAGGAGCTTCATTCGTTCAAGTCTTCTGACATGCAAGCCCGT
TACGATGCGACCTTCCAAGAGGCCAACTTTGGGACGCATATTTTCCGTTT
ACGTGTAAAGGCCGAGCAGGTAAATGATGAGCAGCGCGTGAAGAATACGG
TGATGAACGTTCGTCCTGTGAACCTGGTGCAGGAGAGCCGGGATCTAATT
GCGGCGATCAAGGCGTATAATTAG

Synonyms

Publications