jgi.p|Nanoce1779_2|441746, mRNA_4732 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|441746
Unique Name	mRNA_4732
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1367
Alignment location	scaffold_9:502187..504110 -

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Properties


Property Name	Value
TranscriptId	441832
Track	FilteredModels2
ProteinId	441746

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:502187..504110 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|441746	gene_4732	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|441746	mRNA_4732-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4732	CDS_4732	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:502187..504110-
coding sequence from alignment at scaffold_9:502187..504110-

mRNA sequence

>mRNA_4732 ID=mRNA_4732|Name=jgi.p|Nanoce1779_2|441746|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
GCAACGGCGCAGGTCCAAGCCTAGGCGTGCCTCTTTCTTTCCACCAACAA
CACAACACGAATATTGCACGCAGCCGTGGATTGACTCATCGACTACCTTT
ATCTCTTTGCCAACCACAGGCGGTGGAGTGCTTGCGATTTTTATTCTATC
CCAAACCGAGTGAGGAAAGCAATGGCCCGCTCCCTGTTTCCCCTATACAG
CCTCCTTCCCTACCTCCTCCTCCTCCTCCTGCCCCAGACTTGGGCGTTTT
TTCCACTTTCCGGCCGCCACCTCCTCCTTCTGCCTCTTCGCTCCCACGAC
GAAGATGGCGATGATCGTACGTAGAAGAGCGGACGGTGCCTTACGCATGG
CTGCGGGCGAGCAGGCAACAATCGAAGGCGTCTCTGTTGTGCTTCTTGCT
GGTGGTGTGGGCAAACGCATGAAGGCCGACCGACCGAAACAATTTCTGGA
GTTATTGGGTAAGCCGGTTTTGTTGCACTCGCTTGAGATATTCAGTACCC
TGCCAGGGATTAACCGGATTGTAATTGTCCTGGACCAGAGCTACCGCAAG
GATTTCGCATTCCTGCAGGAGACGGATCCCCGCATTGTGTTTGCGGACCC
TGGAAAAGAACGACAAGACTCCGTCCTCAATGGCTTCTGCCAGACCCTTC
CAGACGCTAGCATCGTCTGCATTCACGATTCTGCCCGTCCTCTAGTCTCA
CAAGCCGCTGTTTTGGCCTCTCTGCGAGATGGAGTTAAGCACGGCGCGGC
CGTGTTGGGTGTGCCTATGAAAGCGACCGTCAAGGAGTCTGAAGATGGTG
AATTCGTCCTAAGGACCATCAATCGTTCTCGGCTTTGGGAGATTCAGACC
CCGCAAGTGATCAAACCGGACATCTTGGCCAAAGCCTTTGAGTATGTTAG
AGAAAACGCATTGGAGGTGACGGATGATGTCTCTATGGTTGAGGAGGTGG
GCTTGCCGGTGAAGCTGACTATGGGCGAGTACACGAACATTAAGCTGACC
ACACCCGAGGACTTGGGCGTGGCGGAGGGGTTTTTGAAGCAGCGGGCTGA
GGGAAAGCTTTAAATGATTCTCAAGATGGACCTGGAGGGTGAGACAAGGA
AAACAGAATTGGGCCAATAGAGATAGAGAGTGAAAGGGGCAAGGATTGGG
AGGTTGAAAGAATGAACATGAACCAAAAATTTGCTATAGCAAATGCAAAG
AGGAAAGACAGGATGTGTAAATTCATTGGGTTTGCCGGAATCTTTGCGTG
CTTTTTGCATTGCGTAGAAAAGGACAGAGGACATCAAGCAAGGCGGAGAG
TTCCGACCCGCGGCCCACGGTGGCATTGGCGCCATGACACCTGACCGTAT
TAAAACAACAGATGCGA

protein sequence of jgi.p|Nanoce1779_2|441746

>mRNA_4732-protein ID=mRNA_4732-protein|Name=jgi.p|Nanoce1779_2|441746|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MAMIVRRRADGALRMAAGEQATIEGVSVVLLAGGVGKRMKADRPKQFLEL
LGKPVLLHSLEIFSTLPGINRIVIVLDQSYRKDFAFLQETDPRIVFADPG
KERQDSVLNGFCQTLPDASIVCIHDSARPLVSQAAVLASLRDGVKHGAAV
LGVPMKATVKESEDGEFVLRTINRSRLWEIQTPQVIKPDILAKAFEYVRE
NALEVTDDVSMVEEVGLPVKLTMGEYTNIKLTTPEDLGVAEGFLKQRAEG
KL*

mRNA from alignment at scaffold_9:502187..504110-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4732 ID=mRNA_4732|Name=jgi.p|Nanoce1779_2|441746|organism=Nannochloropsis oceanica|type=mRNA|length=1924bp|location=Sequence derived from alignment at scaffold_9:502187..504110- (Nannochloropsis oceanica)
GCAACGGCGCAGGTCCAAGCCTAGGCGTGCCTCTTTCTTTCCACCAACAA
CACAACACGAATATTGCACGCAGCCGTGGATTGACTCATCGACTACCTTT
ATCTCTTTGCCAACCACAGGCGGTGGAGTGCTTGCGATTTTTATTCTATC
CCAAACCGAGTGAGGAAAGCAATGGCCCGCTCCCTGTTTCCCCTATACAG
CCTCCTTCCCTACCTCCTCCTCCTCCTCCTGCCCCAGACTTGGGCGTTTT
TTCCACTTTCCGGCCGCCACCTCCTCCTTCTGCCTCTTCGCTCCCACGAC
GAAGATGGCGATGATCGTACGTAGAAGAGCGGACGGTGCCTTACGCATGG
CTGCGGGCGAGCAGGTAAAGGCTCTCCCATGAGAGGAGGAGGAGGTAAAC
CAAGTTTCTGCCACAGTTGCAGGCCCGAGCGCTTCTCCTGGACATGCATT
TTCTCCGTTGATTTCTTCAACGTGGAGTCCATTCTTTTTTGCAGCTCGCA
GGATGAGGCCTAATACTCTATCTTCCCAACCCTCTCTCACTTTACTGTGA
ACAAAATCAGGCAACAATCGAAGGCGTCTCTGTTGTGCTTCTTGCTGGTG
GTGTGGGCAAACGCATGAAGGCCGACCGACCGAAACAATTTCTGGAGTTA
TTGGGTAAGCCGGTTTTGTTGCACTCGCTTGAGATATTCAGTACCCTGCC
AGGGATTAACCGGTGCGTGCGAAGGGGAAAGGGTGGAGGGAGGGAGGGAG
GGAGTGGAGAGAAGGAGAGGGAGGGAGGGAGGGAGTGGAGAGAAGGAGAG
AGCATGAAGATCAGGGAGAGTCAAGGATAAGGACGATAGAAATGCGCGAG
GAGGATTGACGACGAAAACTACGAGATACTGACAAGACGGATGGGAGGCA
GTATTGCGCCTCCCTGGCATTGGAAAGAGAAGAAAAAAAATCAAGTGCCG
ATTCACTCATTTTCCCATTTTCCCTTCCATACGATAACCAATACAAACAG
GATTGTAATTGTCCTGGACCAGAGCTACCGCAAGGATTTCGCATTCCTGC
AGGAGACGGATCCCCGCATTGTGTTTGCGGACCCTGGAAAGTAAGAAGAT
TTTTATTATTACCATTCATTTATATATATTTATTTACTCTCCCTCTCTCC
TCCCTTCCCACAGAGAACGACAAGACTCCGTCCTCAATGGCTTCTGCCAG
ACCCTTCCAGACGCTAGCATCGTCTGCATTCACGATTCTGCCCGTCCTCT
AGTCTCACAAGCCGCTGTTTTGGCCTCTCTGCGAGATGGAGTTAAGCACG
GCGCGGCCGTGTTGGGTGTGCCTATGAAAGCGACCGTCAAGGAGTCTGAA
GATGGTGAATTCGTCCTAAGGACCATCAATCGTTCTCGGCTTTGGGAGAT
TCAGACCCCGCAAGTGATCAAACCGGACATCTTGGCCAAAGCCTTTGAGT
ATGTTAGAGAAAACGCATTGGAGGTGACGGATGATGTCTCTATGGTTGAG
GAGGTGGGCTTGCCGGTGAAGCTGACTATGGGCGAGTACACGAACATTAA
GCTGACCACACCCGAGGACTTGGGCGTGGCGGAGGGGTTTTTGAAGCAGC
GGGCTGAGGGAAAGCTTTAAATGATTCTCAAGATGGACCTGGAGGGTGAG
ACAAGGAAAACAGAATTGGGCCAATAGAGATAGAGAGTGAAAGGGGCAAG
GATTGGGAGGTTGAAAGAATGAACATGAACCAAAAATTTGCTATAGCAAA
TGCAAAGAGGAAAGACAGGATGTGTAAATTCATTGGGTTTGCCGGAATCT
TTGCGTGCTTTTTGCATTGCGTAGAAAAGGACAGAGGACATCAAGCAAGG
CGGAGAGTTCCGACCCGCGGCCCACGGTGGCATTGGCGCCATGACACCTG
ACCGTATTAAAACAACAGATGCGA

Coding sequence (CDS) from alignment at scaffold_9:502187..504110-

>mRNA_4732 ID=mRNA_4732|Name=jgi.p|Nanoce1779_2|441746|organism=Nannochloropsis oceanica|type=CDS|length=3036bp|location=Sequence derived from alignment at scaffold_9:502187..504110- (Nannochloropsis oceanica)
AGAACGACAAGACTCCGTCCTCAATGGCTTCTGCCAGACCCTTCCAGACG
CTAGCATCGTCTGCATTCACGATTCTGCCCGTCCTCTAGTCTCACAAGCC
GCTGTTTTGGCCTCTCTGCGAGATGGAGTTAAGCACGGCGCGGCCGTGTT
GGGTGTGCCTATGAAAGCGACCGTCAAGGAGTCTGAAGATGGTGAATTCG
TCCTAAGGACCATCAATCGTTCTCGGCTTTGGGAGATTCAGACCCCGCAA
GTGATCAAACCGGACATCTTGGCCAAAGCCTTTGAGTATGTTAGAGAAAA
CGCATTGGAGGTGACGGATGATGTCTCTATGGTTGAGGAGGTGGGCTTGC
CGGTGAAGCTGACTATGGGCGAGTACACGAACATTAAGCTGACCACACCC
GAGGACTTGGGCGTGGCGGAGGGGTTTTTGAAGCAGCGGGCTGAGGGAAA
GCTTTAAGATTGTAATTGTCCTGGACCAGAGCTACCGCAAGGATTTCGCA
TTCCTGCAGGAGACGGATCCCCGCATTGTGTTTGCGGACCCTGGAAAGCA
ACAATCGAAGGCGTCTCTGTTGTGCTTCTTGCTGGTGGTGTGGGCAAACG
CATGAAGGCCGACCGACCGAAACAATTTCTGGAGTTATTGGGTAAGCCGG
TTTTGTTGCACTCGCTTGAGATATTCAGTACCCTGCCAGGGATTAACCGA
TGGCGATGATCGTACGTAGAAGAGCGGACGGTGCCTTACGCATGGCTGCG
GGCGAGCAGAGAACGACAAGACTCCGTCCTCAATGGCTTCTGCCAGACCC
TTCCAGACGCTAGCATCGTCTGCATTCACGATTCTGCCCGTCCTCTAGTC
TCACAAGCCGCTGTTTTGGCCTCTCTGCGAGATGGAGTTAAGCACGGCGC
GGCCGTGTTGGGTGTGCCTATGAAAGCGACCGTCAAGGAGTCTGAAGATG
GTGAATTCGTCCTAAGGACCATCAATCGTTCTCGGCTTTGGGAGATTCAG
ACCCCGCAAGTGATCAAACCGGACATCTTGGCCAAAGCCTTTGAGTATGT
TAGAGAAAACGCATTGGAGGTGACGGATGATGTCTCTATGGTTGAGGAGG
TGGGCTTGCCGGTGAAGCTGACTATGGGCGAGTACACGAACATTAAGCTG
ACCACACCCGAGGACTTGGGCGTGGCGGAGGGGTTTTTGAAGCAGCGGGC
TGAGGGAAAGCTTTAAGATTGTAATTGTCCTGGACCAGAGCTACCGCAAG
GATTTCGCATTCCTGCAGGAGACGGATCCCCGCATTGTGTTTGCGGACCC
TGGAAAGCAACAATCGAAGGCGTCTCTGTTGTGCTTCTTGCTGGTGGTGT
GGGCAAACGCATGAAGGCCGACCGACCGAAACAATTTCTGGAGTTATTGG
GTAAGCCGGTTTTGTTGCACTCGCTTGAGATATTCAGTACCCTGCCAGGG
ATTAACCGATGGCGATGATCGTACGTAGAAGAGCGGACGGTGCCTTACGC
ATGGCTGCGGGCGAGCAGAGAACGACAAGACTCCGTCCTCAATGGCTTCT
GCCAGACCCTTCCAGACGCTAGCATCGTCTGCATTCACGATTCTGCCCGT
CCTCTAGTCTCACAAGCCGCTGTTTTGGCCTCTCTGCGAGATGGAGTTAA
GCACGGCGCGGCCGTGTTGGGTGTGCCTATGAAAGCGACCGTCAAGGAGT
CTGAAGATGGTGAATTCGTCCTAAGGACCATCAATCGTTCTCGGCTTTGG
GAGATTCAGACCCCGCAAGTGATCAAACCGGACATCTTGGCCAAAGCCTT
TGAGTATGTTAGAGAAAACGCATTGGAGGTGACGGATGATGTCTCTATGG
TTGAGGAGGTGGGCTTGCCGGTGAAGCTGACTATGGGCGAGTACACGAAC
ATTAAGCTGACCACACCCGAGGACTTGGGCGTGGCGGAGGGGTTTTTGAA
GCAGCGGGCTGAGGGAAAGCTTTAAGATTGTAATTGTCCTGGACCAGAGC
TACCGCAAGGATTTCGCATTCCTGCAGGAGACGGATCCCCGCATTGTGTT
TGCGGACCCTGGAAAGCAACAATCGAAGGCGTCTCTGTTGTGCTTCTTGC
TGGTGGTGTGGGCAAACGCATGAAGGCCGACCGACCGAAACAATTTCTGG
AGTTATTGGGTAAGCCGGTTTTGTTGCACTCGCTTGAGATATTCAGTACC
CTGCCAGGGATTAACCGATGGCGATGATCGTACGTAGAAGAGCGGACGGT
GCCTTACGCATGGCTGCGGGCGAGCAGAGAACGACAAGACTCCGTCCTCA
ATGGCTTCTGCCAGACCCTTCCAGACGCTAGCATCGTCTGCATTCACGAT
TCTGCCCGTCCTCTAGTCTCACAAGCCGCTGTTTTGGCCTCTCTGCGAGA
TGGAGTTAAGCACGGCGCGGCCGTGTTGGGTGTGCCTATGAAAGCGACCG
TCAAGGAGTCTGAAGATGGTGAATTCGTCCTAAGGACCATCAATCGTTCT
CGGCTTTGGGAGATTCAGACCCCGCAAGTGATCAAACCGGACATCTTGGC
CAAAGCCTTTGAGTATGTTAGAGAAAACGCATTGGAGGTGACGGATGATG
TCTCTATGGTTGAGGAGGTGGGCTTGCCGGTGAAGCTGACTATGGGCGAG
TACACGAACATTAAGCTGACCACACCCGAGGACTTGGGCGTGGCGGAGGG
GTTTTTGAAGCAGCGGGCTGAGGGAAAGCTTTAAGATTGTAATTGTCCTG
GACCAGAGCTACCGCAAGGATTTCGCATTCCTGCAGGAGACGGATCCCCG
CATTGTGTTTGCGGACCCTGGAAAGCAACAATCGAAGGCGTCTCTGTTGT
GCTTCTTGCTGGTGGTGTGGGCAAACGCATGAAGGCCGACCGACCGAAAC
AATTTCTGGAGTTATTGGGTAAGCCGGTTTTGTTGCACTCGCTTGAGATA
TTCAGTACCCTGCCAGGGATTAACCGATGGCGATGATCGTACGTAGAAGA
GCGGACGGTGCCTTACGCATGGCTGCGGGCGAGCAG

Synonyms

Publications