jgi.p|Nanoce1779_2|670500, mRNA_4731 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670500
Unique NamemRNA_4731
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length945
Alignment locationscaffold_9:500768..502220 -

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Properties
Property NameValue
TranscriptId670586
TrackFilteredModels2
ProteinId670500
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:500768..502220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670500gene_4731Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670500mRNA_4731-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4731CDS_4731Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4731 ID=mRNA_4731|Name=jgi.p|Nanoce1779_2|670500|organism=Nannochloropsis oceanica|type=mRNA|length=945bp
ATGACACCTGACCGTATTAAAACAACAGATGCGAAAAGCCGGCCGGAGGA
GCACTTCTTCGACCACGCCAGCACGCGCGCGCCGGCGGCGTTGGCAATCA
GTAGCAGCACGACTCCGCGCATCTCGGCCACAGCAGACACCACCTCCTTC
CTCATCACGCGCGCCATGCGACTACCCGGGCTATCCTCGCCACGAAAATC
TATCAAGACCCTCCTGTGGATATTTCCTCCTTTCCTCCGCAACTTAGGCA
TGGGTGGCACCCGCCTACGTCGCAGCAGCGGCAGCAGGAGCAGCAGGAGC
AGCAGCGGCAGCAATGGGAAACCAAGACTGAACGCTAGCCCCCTTTCCTA
CGACTCTGGCCCCACCTTTCTCCACCGAACCGAATCCTCCTCCCCTGAAT
CCGAGCAGCAAGCCTCCCCACCGCAATCATCAACAAGTGAAGGCAGCAGC
AGCTCATATTCTTACGGAGAAGGGAATGGAGATGTCGTCCCTATCCTGAT
CAAATACACGGGCGGAGTTGGGTATAAAAGCCTCTATACGGGCGTCTGCC
GCGTGCTGAAGGAGCGATTTGGGAATATCACCATTCGCAAGACCATCCTG
GGCGTCACCGAAATTAGGGGTGGGAAGAAGCTGGGAGTTTTTGAAGTGGT
AGTGGGGGATCGCTCATTCACCTCGAAGCCGGGGGCGCCTGGTGTGTATT
TACCCATGGCAGATATCCAGGCCGCCATTGAAAGGTTGGTTGTGAGGAGG
GAGAAGGAGAATAGGATACTGGCGGCGGCTGCTGCTGCCGCGGCGGCGCT
GGTGAGCGAGGGGAATGATGGGGTGGCGTACCAGGAGTCGATTCATCCTT
GAGAATTTGGACGGTGTTTGAGCTGGGATAGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
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protein sequence of jgi.p|Nanoce1779_2|670500

>mRNA_4731-protein ID=mRNA_4731-protein|Name=jgi.p|Nanoce1779_2|670500|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MTPDRIKTTDAKSRPEEHFFDHASTRAPAALAISSSTTPRISATADTTSF
LITRAMRLPGLSSPRKSIKTLLWIFPPFLRNLGMGGTRLRRSSGSRSSRS
SSGSNGKPRLNASPLSYDSGPTFLHRTESSSPESEQQASPPQSSTSEGSS
SSYSYGEGNGDVVPILIKYTGGVGYKSLYTGVCRVLKERFGNITIRKTIL
GVTEIRGGKKLGVFEVVVGDRSFTSKPGAPGVYLPMADIQAAIERLVVRR
EKENRILAAAAAAAAALVSEGNDGVAYQESIHP*
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mRNA from alignment at scaffold_9:500768..502220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4731 ID=mRNA_4731|Name=jgi.p|Nanoce1779_2|670500|organism=Nannochloropsis oceanica|type=mRNA|length=1453bp|location=Sequence derived from alignment at scaffold_9:500768..502220- (Nannochloropsis oceanica)
ATGACACCTGACCGTATTAAAACAACAGATGCGAAAAGCCGGCCGGAGGA
GCACTTCTTCGACCACGCCAGTGTGGATTGCGGCCAGGGCAAATAAGCAC
AGGCACCCATCTTCAACCCTACTTTATCCTTCATGCTTGTTTGGTGGTTC
TTGGCCTAGGCTGTTGCCCGTGGACAGGGTGGACATGACAGAAAAAGTGC
CCCGTCATGGCTGTGGCGCATTCGATTTCGCTGCTTGCATTATCACGCAC
GCACCCACACGTTTAACCACATTGACACAGGCACGCGCGCGCCGGCGGCG
TTGGCAATCAGTAGCAGCACGGTGAGGGCACCGCCAAGATGACCACGAGG
CCGCAGCTAATCTCACGGGGGGGGAACCTTGCCTTTTTGCTTCTTCACGT
CGCGGCCTTGGCCTTCCTCGGCGTGGGCGGGAACGCATTCCACCTGGTAC
GTACACACAAGCACACACTACGATTATGTCCAGGGTTAACTTTAGGCCGT
GAAATAAAGGAGGGTGTCTACTGAGTGTGCTTTCTCCCATGCTGTGCTCA
CGTTGTGGCACGCTAAAAAACCCGATTATCTCTCACACTCTCTCATTATC
CAAAATCGTCATATGACAGACTCCGCGCATCTCGGCCACAGCAGACACCA
CCTCCTTCCTCATCACGCGCGCCATGCGACTACCCGGGCTATCCTCGCCA
CGAAAATCTATCAAGACCCTCCTGTGGATATTTCCTCCTTTCCTCCGCAA
CTTAGGCATGGGTGGCACCCGCCTACGTCGCAGCAGCGGCAGCAGGAGCA
GCAGGAGCAGCAGCGGCAGCAATGGGAAACCAAGACTGAACGCTAGCCCC
CTTTCCTACGACTCTGGCCCCACCTTTCTCCACCGAACCGAATCCTCCTC
CCCTGAATCCGAGCAGCAAGCCTCCCCACCGCAATCATCAACAAGTGAAG
GCAGCAGCAGCTCATATTCTTACGGAGAAGGGAATGGAGATGTCGTCCCT
ATCCTGATCAAATACACGGGCGGAGTTGGGTATAAAAGCCTCTATACGGG
CGTCTGCCGCGTGCTGAAGGAGCGATTTGGGAATATCACCATTCGCAAGA
CCATCCTGGGCGTCACCGAAATTAGGGGTGGGAAGAAGCTGGGAGTTTTT
GAAGTGGTAGTGGGGGATCGCTCATTCACCTCGAAGCCGGGGGCGCCTGG
TGTGTATTTACCCATGGCAGATATCCAGGCCGCCATTGAAAGGTTGGTTG
TGAGGAGGGAGAAGGAGAATAGGATACTGGCGGCGGCTGCTGCTGCCGCG
GCGGCGCTGGTGAGCGAGGGGAATGATGGGGTGGCGTACCAGGAGTCGAT
TCATCCTTGAGAATTTGGACGGTGTTTGAGCTGGGATAGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTG
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Coding sequence (CDS) from alignment at scaffold_9:500768..502220-

>mRNA_4731 ID=mRNA_4731|Name=jgi.p|Nanoce1779_2|670500|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_9:500768..502220- (Nannochloropsis oceanica)
ACTCCGCGCATCTCGGCCACAGCAGACACCACCTCCTTCCTCATCACGCG
CGCCATGCGACTACCCGGGCTATCCTCGCCACGAAAATCTATCAAGACCC
TCCTGTGGATATTTCCTCCTTTCCTCCGCAACTTAGGCATGGGTGGCACC
CGCCTACGTCGCAGCAGCGGCAGCAGGAGCAGCAGGAGCAGCAGCGGCAG
CAATGGGAAACCAAGACTGAACGCTAGCCCCCTTTCCTACGACTCTGGCC
CCACCTTTCTCCACCGAACCGAATCCTCCTCCCCTGAATCCGAGCAGCAA
GCCTCCCCACCGCAATCATCAACAAGTGAAGGCAGCAGCAGCTCATATTC
TTACGGAGAAGGGAATGGAGATGTCGTCCCTATCCTGATCAAATACACGG
GCGGAGTTGGGTATAAAAGCCTCTATACGGGCGTCTGCCGCGTGCTGAAG
GAGCGATTTGGGAATATCACCATTCGCAAGACCATCCTGGGCGTCACCGA
AATTAGGGGTGGGAAGAAGCTGGGAGTTTTTGAAGTGGTAGTGGGGGATC
GCTCATTCACCTCGAAGCCGGGGGCGCCTGGTGTGTATTTACCCATGGCA
GATATCCAGGCCGCCATTGAAAGGTTGGTTGTGAGGAGGGAGAAGGAGAA
TAGGATACTGGCGGCGGCTGCTGCTGCCGCGGCGGCGCTGGTGAGCGAGG
GGAATGATGGGGTGGCGTACCAGGAGTCGATTCATCCTTGAGCACGCGCG
CGCCGGCGGCGTTGGCAATCAGTAGCAGCACGATGACACCTGACCGTATT
AAAACAACAGATGCGAAAAGCCGGCCGGAGGAGCACTTCTTCGACCACGC
CAACTCCGCGCATCTCGGCCACAGCAGACACCACCTCCTTCCTCATCACG
CGCGCCATGCGACTACCCGGGCTATCCTCGCCACGAAAATCTATCAAGAC
CCTCCTGTGGATATTTCCTCCTTTCCTCCGCAACTTAGGCATGGGTGGCA
CCCGCCTACGTCGCAGCAGCGGCAGCAGGAGCAGCAGGAGCAGCAGCGGC
AGCAATGGGAAACCAAGACTGAACGCTAGCCCCCTTTCCTACGACTCTGG
CCCCACCTTTCTCCACCGAACCGAATCCTCCTCCCCTGAATCCGAGCAGC
AAGCCTCCCCACCGCAATCATCAACAAGTGAAGGCAGCAGCAGCTCATAT
TCTTACGGAGAAGGGAATGGAGATGTCGTCCCTATCCTGATCAAATACAC
GGGCGGAGTTGGGTATAAAAGCCTCTATACGGGCGTCTGCCGCGTGCTGA
AGGAGCGATTTGGGAATATCACCATTCGCAAGACCATCCTGGGCGTCACC
GAAATTAGGGGTGGGAAGAAGCTGGGAGTTTTTGAAGTGGTAGTGGGGGA
TCGCTCATTCACCTCGAAGCCGGGGGCGCCTGGTGTGTATTTACCCATGG
CAGATATCCAGGCCGCCATTGAAAGGTTGGTTGTGAGGAGGGAGAAGGAG
AATAGGATACTGGCGGCGGCTGCTGCTGCCGCGGCGGCGCTGGTGAGCGA
GGGGAATGATGGGGTGGCGTACCAGGAGTCGATTCATCCTTGAGCACGCG
CGCGCCGGCGGCGTTGGCAATCAGTAGCAGCACGATGACACCTGACCGTA
TTAAAACAACAGATGCGAAAAGCCGGCCGGAGGAGCACTTCTTCGACCAC
GCCAACTCCGCGCATCTCGGCCACAGCAGACACCACCTCCTTCCTCATCA
CGCGCGCCATGCGACTACCCGGGCTATCCTCGCCACGAAAATCTATCAAG
ACCCTCCTGTGGATATTTCCTCCTTTCCTCCGCAACTTAGGCATGGGTGG
CACCCGCCTACGTCGCAGCAGCGGCAGCAGGAGCAGCAGGAGCAGCAGCG
GCAGCAATGGGAAACCAAGACTGAACGCTAGCCCCCTTTCCTACGACTCT
GGCCCCACCTTTCTCCACCGAACCGAATCCTCCTCCCCTGAATCCGAGCA
GCAAGCCTCCCCACCGCAATCATCAACAAGTGAAGGCAGCAGCAGCTCAT
ATTCTTACGGAGAAGGGAATGGAGATGTCGTCCCTATCCTGATCAAATAC
ACGGGCGGAGTTGGGTATAAAAGCCTCTATACGGGCGTCTGCCGCGTGCT
GAAGGAGCGATTTGGGAATATCACCATTCGCAAGACCATCCTGGGCGTCA
CCGAAATTAGGGGTGGGAAGAAGCTGGGAGTTTTTGAAGTGGTAGTGGGG
GATCGCTCATTCACCTCGAAGCCGGGGGCGCCTGGTGTGTATTTACCCAT
GGCAGATATCCAGGCCGCCATTGAAAGGTTGGTTGTGAGGAGGGAGAAGG
AGAATAGGATACTGGCGGCGGCTGCTGCTGCCGCGGCGGCGCTGGTGAGC
GAGGGGAATGATGGGGTGGCGTACCAGGAGTCGATTCATCCTTGAGCACG
CGCGCGCCGGCGGCGTTGGCAATCAGTAGCAGCACGATGACACCTGACCG
TATTAAAACAACAGATGCGAAAAGCCGGCCGGAGGAGCACTTCTTCGACC
ACGCCA
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Synonyms
Publications