jgi.p|Nanoce1779_2|243157, mRNA_473 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|243157
Unique NamemRNA_473
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length833
Alignment locationscaffold_3:1146593..1147425 +

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Properties
Property NameValue
TranscriptId243243
TrackFilteredModels2
ProteinId243157
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1146593..1147425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243157gene_473Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243157mRNA_473-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_473CDS_473Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_473 ID=mRNA_473|Name=jgi.p|Nanoce1779_2|243157|organism=Nannochloropsis oceanica|type=mRNA|length=833bp
GCAAGGCGATGACATGATATTTGGCTGGACATCAATGCCTTGATAATTTT
GCATAGTTTGCACTATTCCAGAAAGAGACATTTCGTCCTTGCCGTGCTTT
AGCGTTTGTCGTGCGTGGTGCTTGCTGTGTGACGTTCTTCTCGTTCCGAG
CCTTTATATGCTTCAAGTCGTCCTTTTGTGTTGTTTTCTTATGCATCTGG
TGGTTCGACCCGTGATCTTTCCATTCGAAACAGCTACATCTCTCCTCATA
TATATGGTCCAGTGCACCACTCCTTTTGGGTACGTCGCCTTCCCTTCCGA
GCTGAGCGCGACGGCCATCCTCCCTGCTGGTGCTTCTACATGCTCCCCGG
CATTCCCAGCAAAGGCGATAAAAAGCCTCACACTCGCATGTCATTCTTTG
ATAAACTACTACATGGGAATGGCTATCAGCCAAGCTTTGGAGGGCTGGGC
GGCGATGAATAGGCAGAAGTTGAGACCTTGCTATTCAGTGCTCCTTAACC
CGACTCCATTCGACGTGAATAACTTTAGCATCTTTTTTTTTTCCGTCCAG
CTATTTGTGATCTTCGCGACAAGATAAAAATAGTTAGTTATACTTCTTTA
TAGTTGTCCTTTATATCCTCGTTAGTCGCCCCAATGAAGATTTATCGAAG
TTTAAGTAGGCTAGAGAAGTCAAAACATTTTTATGTACTTACGGATGCTT
TCCCTACTTCACGCACAGGTCATCCCCACACACAATTTTTAAAAAAACAA
AAAAACATGCACACGAATGACACACTGCGCACATCACACGCACTCACTAC
TTGTACATAGAATATCAACCCTAGGCTACAAAA
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protein sequence of jgi.p|Nanoce1779_2|243157

>mRNA_473-protein ID=mRNA_473-protein|Name=jgi.p|Nanoce1779_2|243157|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MLQVVLLCCFLMHLVVRPVIFPFETATSLLIYMVQCTTPFGYVAFPSELS
ATAILPAGASTCSPAFPAKAIKSLTLACHSLINYYMGMAISQALEGWAAM
NRQKLRPCYSVLLNPTPFDVNNFSIFFFSVQLFVIFATR*
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mRNA from alignment at scaffold_3:1146593..1147425+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_473 ID=mRNA_473|Name=jgi.p|Nanoce1779_2|243157|organism=Nannochloropsis oceanica|type=mRNA|length=833bp|location=Sequence derived from alignment at scaffold_3:1146593..1147425+ (Nannochloropsis oceanica)
GCAAGGCGATGACATGATATTTGGCTGGACATCAATGCCTTGATAATTTT
GCATAGTTTGCACTATTCCAGAAAGAGACATTTCGTCCTTGCCGTGCTTT
AGCGTTTGTCGTGCGTGGTGCTTGCTGTGTGACGTTCTTCTCGTTCCGAG
CCTTTATATGCTTCAAGTCGTCCTTTTGTGTTGTTTTCTTATGCATCTGG
TGGTTCGACCCGTGATCTTTCCATTCGAAACAGCTACATCTCTCCTCATA
TATATGGTCCAGTGCACCACTCCTTTTGGGTACGTCGCCTTCCCTTCCGA
GCTGAGCGCGACGGCCATCCTCCCTGCTGGTGCTTCTACATGCTCCCCGG
CATTCCCAGCAAAGGCGATAAAAAGCCTCACACTCGCATGTCATTCTTTG
ATAAACTACTACATGGGAATGGCTATCAGCCAAGCTTTGGAGGGCTGGGC
GGCGATGAATAGGCAGAAGTTGAGACCTTGCTATTCAGTGCTCCTTAACC
CGACTCCATTCGACGTGAATAACTTTAGCATCTTTTTTTTTTCCGTCCAG
CTATTTGTGATCTTCGCGACAAGATAAAAATAGTTAGTTATACTTCTTTA
TAGTTGTCCTTTATATCCTCGTTAGTCGCCCCAATGAAGATTTATCGAAG
TTTAAGTAGGCTAGAGAAGTCAAAACATTTTTATGTACTTACGGATGCTT
TCCCTACTTCACGCACAGGTCATCCCCACACACAATTTTTAAAAAAACAA
AAAAACATGCACACGAATGACACACTGCGCACATCACACGCACTCACTAC
TTGTACATAGAATATCAACCCTAGGCTACAAAA
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Coding sequence (CDS) from alignment at scaffold_3:1146593..1147425+

>mRNA_473 ID=mRNA_473|Name=jgi.p|Nanoce1779_2|243157|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_3:1146593..1147425+ (Nannochloropsis oceanica)
ATGCTTCAAGTCGTCCTTTTGTGTTGTTTTCTTATGCATCTGGTGGTTCG
ACCCGTGATCTTTCCATTCGAAACAGCTACATCTCTCCTCATATATATGG
TCCAGTGCACCACTCCTTTTGGGTACGTCGCCTTCCCTTCCGAGCTGAGC
GCGACGGCCATCCTCCCTGCTGGTGCTTCTACATGCTCCCCGGCATTCCC
AGCAAAGGCGATAAAAAGCCTCACACTCGCATGTCATTCTTTGATAAACT
ACTACATGGGAATGGCTATCAGCCAAGCTTTGGAGGGCTGGGCGGCGATG
AATAGGCAGAAGTTGAGACCTTGCTATTCAGTGCTCCTTAACCCGACTCC
ATTCGACGTGAATAACTTTAGCATCTTTTTTTTTTCCGTCCAGCTATTTG
TGATCTTCGCGACAAGATAA
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Synonyms
Publications