jgi.p|Nanoce1779_2|527507, mRNA_4729 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527507
Unique Name	mRNA_4729
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1557
Alignment location	scaffold_9:497730..499460 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	527593
Track	FilteredModels2
ProteinId	527507

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:497730..499460 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527507	gene_4729	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527507	mRNA_4729-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4729	CDS_4729	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:497730..499460+
coding sequence from alignment at scaffold_9:497730..499460+

mRNA sequence

>mRNA_4729 ID=mRNA_4729|Name=jgi.p|Nanoce1779_2|527507|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
ATGCTGCAGGACACCCAGCGAAATCGTCTCTGCACCATACATATCTGGCC
TCACTCCTCTCGTCGGCCGAAAACGCAACTCGGCGCAGGCAACTTGCCTC
AAGCAGAACAGCTCGCCATCCCCCCTCCAGAGAAGGTCCTCGCCGCCGTC
GAAAAAGCCGGCGGTCGAGTCACGGTTCAAGACGTCGCAGCGTTGGCCGG
TGTCGACCTCTTAACTGCGCAGAAGGGGCTGGTCAAGCTGGCGGCGCTGG
TGGAGGGTGATCTGGAAGTGGGGAAGGATGGAGATTTGGTTTACAACTTC
CCGAGGAATTTTCGGACTGCTCTGAGGACACGATCGATTACGCAGCAAGC
AAAGGAGCTTTGGATTAAGGTATGGCCGTCGTTGTTTTACGCAACAAGGG
TGTCTTTTGGTTTGTGTTTAGTGTTGTCGATCGTGTTGGTCTTTGCAACC
ATTACCTTTGCGGGGTCCGCGTCGCAAGAGGGAGATCGCGACGATGACCG
AAGGAGGGAGAGAGGGGGAGGGTTCGGAGGAGGGATGGGAATGTACTTTG
GGCCTAGCCCGTTTGACTTTTTTATGTATCGGCCGTATGGTTATTACTAC
GGCTATGGAGGGCAGAGGCAGAGAGGAAGAGATGAGGGGGCGCCGGTGGA
GATGGGGTTTTTGGAGAGTTGTTTTTCATACATTTTTGGGGATGGAAATC
CAAATGTGGGGCTGGAGGAGGTGAGGTACACGGAGATTGCGGGTGTCATA
AGACGGAGTGGAGGAGCAGTGGTGGCGGAGCAGCTAGCACCTTATCTTGA
TGTGCCAGCGCCGAAGGATCCCACGGGCTATGCGATGTCGGGAGGAGGGC
CTCTGACTGCGGTGGTAGACGAATCGTTTGTCTTGCCGGTTCTGACAAGA
TTGAATGGTCGGCCGGAAGTCACGGCAGAGGGAGAGATTGTGTATGTTTT
CCCTGACTTGATGACCACGGCGGCGGCCCCGGGGGGAGAGGGAGGAAGGG
AGATGCTGAATGCGAACTGGGCGAGGCAAGAGAGGGTGGATGAGGAGAAT
CCCATTCCCTTCTCACTCGCCCCTGGGACCAACCGATTATTTGCTGGTAT
TTTGGGGGTGGCAAATTTGGGGGGGGCGATCGTGTTAGGCGATGTATTGA
GAAACTATGCGTCTGTCTACGGAGCAAACACCCCCTTGCCGGGTATCCTT
GGGTTGAGCCAAGCCCTCTACCCCGCCCTCCTTGTGTACGCGGTCGGATT
CAACCTGATCCCTTTCTTGCGTTCTCGGTGGGTCAACGCGAAGAATAAAG
AAATTTTACAGCGAAACGAGGCAAGGCAAGCATGGGCGGTGATTTTGGAG
AGAGCTGTTGGGCCACTGTACGAGAAAATTTTATCGGCAAGACATTACCG
ATCTAAAATGAAGGTGGTGAGGAAAGAGGATATGACGTACAGTAGCTCGG
GGAGTATGGCAGAGCGGCAGGGAATGGATAAGATGACAAAGGATTTAGAG
GATTTTGATAGGCAATTTGAGGAAAAAGATATGAAGAGGGGAGGAAAGAC
GTTGTAG

protein sequence of jgi.p|Nanoce1779_2|527507

>mRNA_4729-protein ID=mRNA_4729-protein|Name=jgi.p|Nanoce1779_2|527507|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MLQDTQRNRLCTIHIWPHSSRRPKTQLGAGNLPQAEQLAIPPPEKVLAAV
EKAGGRVTVQDVAALAGVDLLTAQKGLVKLAALVEGDLEVGKDGDLVYNF
PRNFRTALRTRSITQQAKELWIKVWPSLFYATRVSFGLCLVLSIVLVFAT
ITFAGSASQEGDRDDDRRRERGGGFGGGMGMYFGPSPFDFFMYRPYGYYY
GYGGQRQRGRDEGAPVEMGFLESCFSYIFGDGNPNVGLEEVRYTEIAGVI
RRSGGAVVAEQLAPYLDVPAPKDPTGYAMSGGGPLTAVVDESFVLPVLTR
LNGRPEVTAEGEIVYVFPDLMTTAAAPGGEGGREMLNANWARQERVDEEN
PIPFSLAPGTNRLFAGILGVANLGGAIVLGDVLRNYASVYGANTPLPGIL
GLSQALYPALLVYAVGFNLIPFLRSRWVNAKNKEILQRNEARQAWAVILE
RAVGPLYEKILSARHYRSKMKVVRKEDMTYSSSGSMAERQGMDKMTKDLE
DFDRQFEEKDMKRGGKTL*

mRNA from alignment at scaffold_9:497730..499460+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4729 ID=mRNA_4729|Name=jgi.p|Nanoce1779_2|527507|organism=Nannochloropsis oceanica|type=mRNA|length=1731bp|location=Sequence derived from alignment at scaffold_9:497730..499460+ (Nannochloropsis oceanica)
ATGCTGCAGGACACCCAGCGAAATCGTCTCTGCACCATACATATCTGGCC
TCACTCCTCTCGTCGGCCGAAAACGCAACTCGGCGCAGGCAACTTGCCTC
AAGCAGAACAGCTCGCCATCCCCCCTCCAGAGAAGGTCCTCGCCGCCGTC
GAAAAAGCCGGCGGTCGAGTCACGGTTCAAGACGTCGCAGCGTTGGCCGG
TGTCGACCTCTTAACTGCGCAGAAGGGGCTGGTCAAGCTGGCGGCGCTGG
TGGAGGGTGATCTGGAAGTGGGGAAGGATGGAGATTTGGTTTACAACTTC
CCGAGGAATTTTCGGACTGCTCTGAGGACACGATCGATTACGCAGCAAGC
AAAGGAGCTTTGGATTAAGGTATGGCCGTCGTTGTTTTACGCAACAAGGG
TGTCTTTTGGTTTGTGTTTAGTGTTGTCGATCGTGTTGGTCTTTGCAACC
ATTACCTTTGCGGGGTCCGCGTCGCAAGAGGGAGATCGCGACGATGACCG
AAGGAGGGAGAGAGGGGGAGGGTTCGGAGGAGGGATGGGAATGTACTTTG
GGCCTAGCCCGTTTGACTTTTTTATGTATCGGCCGTATGGTTATTACTAC
GGCTATGGAGGGCAGAGGCAGAGAGGAAGAGATGAGGGGGCGCCGGTGGA
GATGGGGTTTTTGGAGAGTTGTTTTTCATACATTTTTGGGGATGGAAATC
CAAATGTGGGGCTGGAGGAGGTGAGGTACACGGAGATTGCGGGTGTCATA
AGACGGAGTGGAGGAGCAGTGGTGGCGGAGCAGCTAGCACCTTATCTTGA
TGTGCCAGCGCCGAAGGATCCCACGGGCTATGCGATGTCGGGAGGAGGGC
CTCTGACTGCGGTGGTAGACGAATCGTTTGTCTTGCCGGTTCTGACAAGA
TTGAATGGTCGGCCGGAAGTCACGGCAGAGGGAGAGATTGTGTATGTTTT
CCCTGACTTGATGACCACGGCGGCGGCCCCGGGGGGAGAGGGAGGAAGGG
AGATGCTGAATGCGAACTGGGCGAGGCAAGAGAGGGTGGATGAGGAGGTG
AGGGGGTATCAGGGGTTGACGGCATTTGAGTTGAGGGAAGCTTTGCAAGC
GAAGCGGGTCCCAGTGCAAGATTGCTTTGACAAAGCGTCGTTGCTTGAAC
GACTCAAAGGCTTTCTTCTCTCCGCTCCTTCGACTGCACAAGCTGTTGGC
ACTGCTTCCTACCTCGAAGAGAATCCCATTCCCTTCTCACTCGCCCCTGG
GACCAACCGATTATTTGCTGGTATTTTGGGGGTGGCAAATTTGGGGGGGG
CGATCGTGTTAGGCGATGTATTGAGAAACTATGCGTCTGTCTACGGAGCA
AACACCCCCTTGCCGGGTATCCTTGGGTTGAGCCAAGCCCTCTACCCCGC
CCTCCTTGTGTACGCGGTCGGATTCAACCTGATCCCTTTCTTGCGTTCTC
GGTGGGTCAACGCGAAGAATAAAGAAATTTTACAGCGAAACGAGGCAAGG
CAAGCATGGGCGGTGATTTTGGAGAGAGCTGTTGGGCCACTGTACGAGAA
AATTTTATCGGCAAGACATTACCGATCTAAAATGAAGGTGGTGAGGAAAG
AGGATATGACGTACAGTAGCTCGGGGAGTATGGCAGAGCGGCAGGGAATG
GATAAGATGACAAAGGATTTAGAGGATTTTGATAGGCAATTTGAGGAAAA
AGATATGAAGAGGGGAGGAAAGACGTTGTAG

Coding sequence (CDS) from alignment at scaffold_9:497730..499460+

>mRNA_4729 ID=mRNA_4729|Name=jgi.p|Nanoce1779_2|527507|organism=Nannochloropsis oceanica|type=CDS|length=3114bp|location=Sequence derived from alignment at scaffold_9:497730..499460+ (Nannochloropsis oceanica)
ATGCTGCAGGACACCCAGCGAAATCGTCTCTGCACCATACATATCTGGCC
TCACTCCTCTCGTCGGCCGAAAACGCAACTCGGCGCAGGCAACTTGCCTC
AAGCAGAACAGCTCGCCATCCCCCCTCCAGAGAAGGTCCTCGCCGCCGTC
GAAAAAGCCGGCGGTCGAGTCACGGTTCAAGACGTCGCAGCGTTGGCCGG
TGTCGACCTCTTAACTGCGCAGAAGGGGCTGGTCAAGCTGGCGGCGCTGG
TGGAGGGTGATCTGGAAGTGGGGAAGGATGGAGATTTGGTTTACAACTTC
CCGAGGAATTTTCGGACTGCTCTGAGGACACGATCGATTACGCAGCAAGC
AAAGGAGCTTTGGATTAAGGTATGGCCGTCGTTGTTTTACGCAACAAGGG
TGTCTTTTGGTTTGTGTTTAGTGTTGTCGATCGTGTTGGTCTTTGCAACC
ATTACCTTTGCGGGGTCCGCGTCGCAAGAGGGAGATCGCGACGATGACCG
AAGGAGGGAGAGAGGGGGAGGGTTCGGAGGAGGGATGGGAATGTACTTTG
GGCCTAGCCCGTTTGACTTTTTTATGTATCGGCCGTATGGTTATTACTAC
GGCTATGGAGGGCAGAGGCAGAGAGGAAGAGATGAGGGGGCGCCGGTGGA
GATGGGGTTTTTGGAGAGTTGTTTTTCATACATTTTTGGGGATGGAAATC
CAAATGTGGGGCTGGAGGAGGTGAGGTACACGGAGATTGCGGGTGTCATA
AGACGGAGTGGAGGAGCAGTGGTGGCGGAGCAGCTAGCACCTTATCTTGA
TGTGCCAGCGCCGAAGGATCCCACGGGCTATGCGATGTCGGGAGGAGGGC
CTCTGACTGCGGTGGTAGACGAATCGTTTGTCTTGCCGGTTCTGACAAGA
TTGAATGGTCGGCCGGAAGTCACGGCAGAGGGAGAGATTGTGTATGTTTT
CCCTGACTTGATGACCACGGCGGCGGCCCCGGGGGGAGAGGGAGGAAGGG
AGATGCTGAATGCGAACTGGGCGAGGCAAGAGAGGGTGGATGAGGAGAAT
CCCATTCCCTTCTCACTCGCCCCTGGGACCAACCGATTATTTGCTGGTAT
TTTGGGGGTGGCAAATTTGGGGGGGGCGATCGTGTTAGGCGATGTATTGA
GAAACTATGCGTCTGTCTACGGAGCAAACACCCCCTTGCCGGGTATCCTT
GGGTTGAGCCAAGCCCTCTACCCCGCCCTCCTTGTGTACGCGGTCGGATT
CAACCTGATCCCTTTCTTGCGTTCTCGGTGGGTCAACGCGAAGAATAAAG
AAATTTTACAGCGAAACGAGGCAAGGCAAGCATGGGCGGTGATTTTGGAG
AGAGCTGTTGGGCCACTGTACGAGAAAATTTTATCGGCAAGACATTACCG
ATCTAAAATGAAGGTGGTGAGGAAAGAGGATATGACGTACAGTAGCTCGG
GGAGTATGGCAGAGCGGCAGGGAATGGATAAGATGACAAAGGATTTAGAG
GATTTTGATAGGCAATTTGAGGAAAAAGATATGAAGAGGGGAGGAAAGAC
GTTGTAGATGCTGCAGGACACCCAGCGAAATCGTCTCTGCACCATACATA
TCTGGCCTCACTCCTCTCGTCGGCCGAAAACGCAACTCGGCGCAGGCAAC
TTGCCTCAAGCAGAACAGCTCGCCATCCCCCCTCCAGAGAAGGTCCTCGC
CGCCGTCGAAAAAGCCGGCGGTCGAGTCACGGTTCAAGACGTCGCAGCGT
TGGCCGGTGTCGACCTCTTAACTGCGCAGAAGGGGCTGGTCAAGCTGGCG
GCGCTGGTGGAGGGTGATCTGGAAGTGGGGAAGGATGGAGATTTGGTTTA
CAACTTCCCGAGGAATTTTCGGACTGCTCTGAGGACACGATCGATTACGC
AGCAAGCAAAGGAGCTTTGGATTAAGGTATGGCCGTCGTTGTTTTACGCA
ACAAGGGTGTCTTTTGGTTTGTGTTTAGTGTTGTCGATCGTGTTGGTCTT
TGCAACCATTACCTTTGCGGGGTCCGCGTCGCAAGAGGGAGATCGCGACG
ATGACCGAAGGAGGGAGAGAGGGGGAGGGTTCGGAGGAGGGATGGGAATG
TACTTTGGGCCTAGCCCGTTTGACTTTTTTATGTATCGGCCGTATGGTTA
TTACTACGGCTATGGAGGGCAGAGGCAGAGAGGAAGAGATGAGGGGGCGC
CGGTGGAGATGGGGTTTTTGGAGAGTTGTTTTTCATACATTTTTGGGGAT
GGAAATCCAAATGTGGGGCTGGAGGAGGTGAGGTACACGGAGATTGCGGG
TGTCATAAGACGGAGTGGAGGAGCAGTGGTGGCGGAGCAGCTAGCACCTT
ATCTTGATGTGCCAGCGCCGAAGGATCCCACGGGCTATGCGATGTCGGGA
GGAGGGCCTCTGACTGCGGTGGTAGACGAATCGTTTGTCTTGCCGGTTCT
GACAAGATTGAATGGTCGGCCGGAAGTCACGGCAGAGGGAGAGATTGTGT
ATGTTTTCCCTGACTTGATGACCACGGCGGCGGCCCCGGGGGGAGAGGGA
GGAAGGGAGATGCTGAATGCGAACTGGGCGAGGCAAGAGAGGGTGGATGA
GGAGAATCCCATTCCCTTCTCACTCGCCCCTGGGACCAACCGATTATTTG
CTGGTATTTTGGGGGTGGCAAATTTGGGGGGGGCGATCGTGTTAGGCGAT
GTATTGAGAAACTATGCGTCTGTCTACGGAGCAAACACCCCCTTGCCGGG
TATCCTTGGGTTGAGCCAAGCCCTCTACCCCGCCCTCCTTGTGTACGCGG
TCGGATTCAACCTGATCCCTTTCTTGCGTTCTCGGTGGGTCAACGCGAAG
AATAAAGAAATTTTACAGCGAAACGAGGCAAGGCAAGCATGGGCGGTGAT
TTTGGAGAGAGCTGTTGGGCCACTGTACGAGAAAATTTTATCGGCAAGAC
ATTACCGATCTAAAATGAAGGTGGTGAGGAAAGAGGATATGACGTACAGT
AGCTCGGGGAGTATGGCAGAGCGGCAGGGAATGGATAAGATGACAAAGGA
TTTAGAGGATTTTGATAGGCAATTTGAGGAAAAAGATATGAAGAGGGGAG
GAAAGACGTTGTAG

Synonyms

Publications