jgi.p|Nanoce1779_2|587672, mRNA_4727 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587672
Unique Name	mRNA_4727
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1795
Alignment location	scaffold_9:492372..494381 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587758
Track	FilteredModels2
ProteinId	587672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:492372..494381 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587672	gene_4727	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587672	mRNA_4727-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4727	CDS_4727	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:492372..494381+
coding sequence from alignment at scaffold_9:492372..494381+

mRNA sequence

>mRNA_4727 ID=mRNA_4727|Name=jgi.p|Nanoce1779_2|587672|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
ACGGGCCTTACGTGCCCTGCTTTTTCGTTGCCATCTGTATTTTTTTTACC
ACGAAGACTTTCGCAGGCACGGGCTAGATTTAACATAAGGTGAATGGGAT
GACTATCAGTTATTTCTTCTGCACCTATTTTTCTGGTTTGTTGTTGGCGG
GGCATGCCTGCGATGTTGCTCGCGCCCAAGGACTGCCAACGCCAAGGCAG
ATACTCCTGAAAACCCAAGTGCTTTCTTGTCTTTTTACCACACACATCCC
CACAGAAACACAACAACATGGTAATCGTTACCACAAGAAACAGAGCCATC
CGACGCTAGCCTTGGTCCTATTCTTGGGCAATCTATTAGTTTCTTACCCC
ACTGTCGGTCACCATGATACTGCCGCAGCAAGAGGGTGTGCTGGTCCTGG
AGCGACTTAACTCATGCCTCCATGGCCTGTCAATAATCCCATGCTCACAC
AGGCATTCCGGTCTCACTCTTCTGCTCCTCGGCTGTGGCCACGCCTTTTT
CGCAGTCAAAAGTAGAAGCCCGTGCCATAGTAACGCATCATGCAGCAGCA
GGACGAGGACGACTTGGAGCTTTCTCCTGAGGCCTTGGCGGCCCTGACTG
AGTTTGCCGTGCAGCATGGCCTCGTCGACACGGCCGGAGTGGCCAACGCC
ACGGACCTGCGCAAGACAGTACAAGAAAGCTGTGCGGTGGTCGATCGGGA
GGAATGCTTTGAGTATGTCTATGGTGACAAGTTAGAACAAAAGAGCAGCA
GCAGCAATAGTAGTCACAGCAGCAACATGCCGCAAGTCGTCAATCTCCGC
TTGTATGGGTGGAAGAGGGAACTGGGTCAGCAATTGGACAGCACGGGCTT
GACCATGTGGAGGGCTGGAGAGGACTTGGGTCGGTACTTGTGGGAGAAAC
GCGTGACGCTCTTCGGGGGAGGTCAGCAAGATATGCTGCAGGAGCAAGGT
GGACGACATGTTTTGGAGTTAGGGTGTGGACTGGGGCTTTGTGGGTTGCT
GGCCTCGCTGTTGAATCCGAAGGGAGTAGTGGTTCTTACGGATGGAGACG
AGCTGACGATGGAAAAGCTGGCGGTGAATGTGGAGGAGAATACGGTGAGG
AATGGTTGTGCTGTGATGGCAAGGACGTTGCTATGGGGGAATCACCAAGA
ACTTGTAATTGAATTCCCGGATTTGTTTGATTTGGTGCTAGCTGCTGATG
TAATATATGAGGAGGCAGCAATAGTGCCGTTACTTCAGACAGTGGTGGCC
ACCTTGAAGGAAGGACCGGAAGCCCTATTTTTATTGTCATTTGCTCGGCG
GAATGTGAGTATAGAAAAGGTGCTAAAGGCGGCACAGAAGATGGGATTGG
TCTGTGAGGCGGATGAGAGCTTCGTGTGTGGCGTGAAGGGGGAGCATGTG
TATATCATTCGTCGGGCTCGGCAGCAACAGTCGCACAACTAACGACTGAA
ACAGCAGGAGCAAGGGGAAGACAGACACAGAGGTTGCCACCGGTAGTGCT
AAGAGTGGTAGTATAAATAAAAGGGAATGACCAATAGGCATTTTTCTACC
TCACACACAAAGCGAGACTAACTAAACGAAGAATGAGGGGGAAGCGAACG
TCGATGAGTATGAACAGATAGTTCTCTCCTTGTCGTTGCTTTCTCTTGCT
TTCCTCTTTATTTTGCGTGTTCTTTTCTTCCTGCTTGATGATTCTGAGTT
TCCAATACAAAATCGTGTGCTTCTCTTTTTATGTCTTTCAAACTGCCGTA
ATAAATACCTCAAGAAAAAGACCCCTCCTCCCTCCTCTCCTCCCT

protein sequence of jgi.p|Nanoce1779_2|587672

>mRNA_4727-protein ID=mRNA_4727-protein|Name=jgi.p|Nanoce1779_2|587672|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MQQQDEDDLELSPEALAALTEFAVQHGLVDTAGVANATDLRKTVQESCAV
VDREECFEYVYGDKLEQKSSSSNSSHSSNMPQVVNLRLYGWKRELGQQLD
STGLTMWRAGEDLGRYLWEKRVTLFGGGQQDMLQEQGGRHVLELGCGLGL
CGLLASLLNPKGVVVLTDGDELTMEKLAVNVEENTVRNGCAVMARTLLWG
NHQELVIEFPDLFDLVLAADVIYEEAAIVPLLQTVVATLKEGPEALFLLS
FARRNVSIEKVLKAAQKMGLVCEADESFVCGVKGEHVYIIRRARQQQSHN
*

mRNA from alignment at scaffold_9:492372..494381+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4727 ID=mRNA_4727|Name=jgi.p|Nanoce1779_2|587672|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp|location=Sequence derived from alignment at scaffold_9:492372..494381+ (Nannochloropsis oceanica)
ACGGGCCTTACGTGCCCTGCTTTTTCGTTGCCATCTGTATTTTTTTTACC
ACGAAGACTTTCGCAGGCACGGGCTAGATTTAACATAAGGTGAATGGGAT
GACTATCAGTTATTTCTTCTGCACCTATTTTTCTGGTTTGTTGTTGGCGG
GGCATGCCTGCGATGTTGCTCGCGCCCAAGGACTGCCAACGCCAAGGCAG
ATACTCCTGAAAACCCAAGTGCTTTCTTGTCTTTTTACCACACACATCCC
CACAGAAACACAACAACATGGTAATCGTTACCACAAGAAACAGAGCCATC
CGACGCTAGCCTTGGTCCTATTCTTGGGCAATCTATTAGTTTCTTACCCC
ACTGTCGGTCACCATGATACTGCCGCAGCAAGAGGGTGTGCTGGTCCTGG
AGCGACTTAACTCATGCCTCCATGGCCTGTCAATAATCCCATGCTCACAC
AGGCATTCCGGTCTCACTCTTCTGCTCCTCGGCTGTGGCCACGCCTTTTT
CGCAGTCAAAAGTAGAAGCCCGTGCCATAGTAACGCATCATGCAGCAGCA
GGACGAGGACGACTTGGAGCTTTCTCCTGAGGCCTTGGCGGCCCTGACTG
AGTTTGCCGTGCAGGTCCGTGTGTCTGGATTTAAATTTTGTGATGCGCAT
ATACACGCTGCGCTTCCAACCGTCAGTCCGATTGTGTGCATGCCCTTACG
TAGCTAGTCCGTGAGGGTGCCTTTCCCTATCCTGTTGTCCCCGAACATCT
TCTGTCCTTCTTACCACTTCTTACCAGCCAGAGCGTTTAGCTCACGTCAG
CCACATACTTACGAATTCATATAATATAGCATGGCCTCGTCGACACGGCC
GGAGTGGCCAACGCCACGGACCTGCGCAAGACAGTACAAGAAAGCTGTGC
GGTGGTCGATCGGGAGGAATGCTTTGAGTATGTCTATGGTGACAAGTTAG
AACAAAAGAGCAGCAGCAGCAATAGTAGTCACAGCAGCAACATGCCGCAA
GTCGTCAATCTCCGCTTGTATGGGTGGAAGAGGGAACTGGGTCAGCAATT
GGACAGCACGGGCTTGACCATGTGGAGGGCTGGAGAGGACTTGGGTCGGT
ACTTGTGGGAGAAACGCGTGACGCTCTTCGGGGGAGGTCAGCAAGATATG
CTGCAGGAGCAAGGTGGACGACATGTTTTGGAGTTAGGGTGTGGACTGGG
GCTTTGTGGGTTGCTGGCCTCGCTGTTGAATCCGAAGGGAGTAGTGGTTC
TTACGGATGGAGACGAGCTGACGATGGAAAAGCTGGCGGTGAATGTGGAG
GAGAATACGGTGAGGAATGGTTGTGCTGTGATGGCAAGGACGTTGCTATG
GGGGAATCACCAAGAACTTGTAATTGAATTCCCGGATTTGTTTGATTTGG
TGCTAGCTGCTGATGTAATATATGAGGAGGCAGCAATAGTGCCGTTACTT
CAGACAGTGGTGGCCACCTTGAAGGAAGGACCGGAAGCCCTATTTTTATT
GTCATTTGCTCGGCGGAATGTGAGTATAGAAAAGGTGCTAAAGGCGGCAC
AGAAGATGGGATTGGTCTGTGAGGCGGATGAGAGCTTCGTGTGTGGCGTG
AAGGGGGAGCATGTGTATATCATTCGTCGGGCTCGGCAGCAACAGTCGCA
CAACTAACGACTGAAACAGCAGGAGCAAGGGGAAGACAGACACAGAGGTT
GCCACCGGTAGTGCTAAGAGTGGTAGTATAAATAAAAGGGAATGACCAAT
AGGCATTTTTCTACCTCACACACAAAGCGAGACTAACTAAACGAAGAATG
AGGGGGAAGCGAACGTCGATGAGTATGAACAGATAGTTCTCTCCTTGTCG
TTGCTTTCTCTTGCTTTCCTCTTTATTTTGCGTGTTCTTTTCTTCCTGCT
TGATGATTCTGAGTTTCCAATACAAAATCGTGTGCTTCTCTTTTTATGTC
TTTCAAACTGCCGTAATAAATACCTCAAGAAAAAGACCCCTCCTCCCTCC
TCTCCTCCCT

Coding sequence (CDS) from alignment at scaffold_9:492372..494381+

>mRNA_4727 ID=mRNA_4727|Name=jgi.p|Nanoce1779_2|587672|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_9:492372..494381+ (Nannochloropsis oceanica)
ATGCAGCAGCAGGACGAGGACGACTTGGAGCTTTCTCCTGAGGCCTTGGC
GGCCCTGACTGAGTTTGCCGTGCAGCATGGCCTCGTCGACACGGCCGGAG
TGGCCAACGCCACGGACCTGCGCAAGACAGTACAAGAAAGCTGTGCGGTG
GTCGATCGGGAGGAATGCTTTGAGTATGTCTATGGTGACAAGTTAGAACA
AAAGAGCAGCAGCAGCAATAGTAGTCACAGCAGCAACATGCCGCAAGTCG
TCAATCTCCGCTTGTATGGGTGGAAGAGGGAACTGGGTCAGCAATTGGAC
AGCACGGGCTTGACCATGTGGAGGGCTGGAGAGGACTTGGGTCGGTACTT
GTGGGAGAAACGCGTGACGCTCTTCGGGGGAGGTCAGCAAGATATGCTGC
AGGAGCAAGGTGGACGACATGTTTTGGAGTTAGGGTGTGGACTGGGGCTT
TGTGGGTTGCTGGCCTCGCTGTTGAATCCGAAGGGAGTAGTGGTTCTTAC
GGATGGAGACGAGCTGACGATGGAAAAGCTGGCGGTGAATGTGGAGGAGA
ATACGGTGAGGAATGGTTGTGCTGTGATGGCAAGGACGTTGCTATGGGGG
AATCACCAAGAACTTGTAATTGAATTCCCGGATTTGTTTGATTTGGTGCT
AGCTGCTGATGTAATATATGAGGAGGCAGCAATAGTGCCGTTACTTCAGA
CAGTGGTGGCCACCTTGAAGGAAGGACCGGAAGCCCTATTTTTATTGTCA
TTTGCTCGGCGGAATGTGAGTATAGAAAAGGTGCTAAAGGCGGCACAGAA
GATGGGATTGGTCTGTGAGGCGGATGAGAGCTTCGTGTGTGGCGTGAAGG
GGGAGCATGTGTATATCATTCGTCGGGCTCGGCAGCAACAGTCGCACAAC
TAAATGCAGCAGCAGGACGAGGACGACTTGGAGCTTTCTCCTGAGGCCTT
GGCGGCCCTGACTGAGTTTGCCGTGCAGCATGGCCTCGTCGACACGGCCG
GAGTGGCCAACGCCACGGACCTGCGCAAGACAGTACAAGAAAGCTGTGCG
GTGGTCGATCGGGAGGAATGCTTTGAGTATGTCTATGGTGACAAGTTAGA
ACAAAAGAGCAGCAGCAGCAATAGTAGTCACAGCAGCAACATGCCGCAAG
TCGTCAATCTCCGCTTGTATGGGTGGAAGAGGGAACTGGGTCAGCAATTG
GACAGCACGGGCTTGACCATGTGGAGGGCTGGAGAGGACTTGGGTCGGTA
CTTGTGGGAGAAACGCGTGACGCTCTTCGGGGGAGGTCAGCAAGATATGC
TGCAGGAGCAAGGTGGACGACATGTTTTGGAGTTAGGGTGTGGACTGGGG
CTTTGTGGGTTGCTGGCCTCGCTGTTGAATCCGAAGGGAGTAGTGGTTCT
TACGGATGGAGACGAGCTGACGATGGAAAAGCTGGCGGTGAATGTGGAGG
AGAATACGGTGAGGAATGGTTGTGCTGTGATGGCAAGGACGTTGCTATGG
GGGAATCACCAAGAACTTGTAATTGAATTCCCGGATTTGTTTGATTTGGT
GCTAGCTGCTGATGTAATATATGAGGAGGCAGCAATAGTGCCGTTACTTC
AGACAGTGGTGGCCACCTTGAAGGAAGGACCGGAAGCCCTATTTTTATTG
TCATTTGCTCGGCGGAATGTGAGTATAGAAAAGGTGCTAAAGGCGGCACA
GAAGATGGGATTGGTCTGTGAGGCGGATGAGAGCTTCGTGTGTGGCGTGA
AGGGGGAGCATGTGTATATCATTCGTCGGGCTCGGCAGCAACAGTCGCAC
AACTAA

Synonyms

Publications