jgi.p|Nanoce1779_2|441715, mRNA_4726 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|441715
Unique NamemRNA_4726
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length494
Alignment locationscaffold_9:492280..492773 -

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Properties
Property NameValue
TranscriptId441801
TrackFilteredModels2
ProteinId441715
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:492280..492773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|441715gene_4726Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|441715mRNA_4726-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4726CDS_4726Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4726 ID=mRNA_4726|Name=jgi.p|Nanoce1779_2|441715|organism=Nannochloropsis oceanica|type=mRNA|length=494bp
CTCCAGGACCAGCACACCCTCTTGCTGCGGCAGTATCATGGTGACCGACA
GTGGGGTAAGAAACTAATAGATTGCCCAAGAATAGGACCAAGGCTAGCGT
CGGATGGCTCTGTTTCTTGTGGTAACGATTACCATGTTGTTGTGTTTCTG
TGGGGATGTGTGTGGTAAAAAGACAAGAAAGCACTTGGGTTTTCAGGAGT
ATCTGCCTTGGCGTTGGCAGTCCTTGGGCGCGAGCAACATCGCAGGCATG
CCCCGCCAACAACAAACCAGAAAAATAGGTGCAGAAGAAATAACTGATAG
TCATCCCATTCACCTTATGTTAAATCTAGCCCGTGCCTGCGAAAGTCTTC
GTGGTAAAAAAAATACAGATGGCAACGAAAAAGCAGGGCACGTAAGGCCC
GTGTTCTTCATTTCGCAACGCCACCATGTCCTTACACGGACTGTCCTCAA
TATATTCCCTTGACCTCAATGAAGTACATAAAAACATTTATGAT
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protein sequence of jgi.p|Nanoce1779_2|441715

>mRNA_4726-protein ID=mRNA_4726-protein|Name=jgi.p|Nanoce1779_2|441715|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MALFLVVTITMLLCFCGDVCGKKTRKHLGFQEYLPWRWQSLGASNIAGMP
RQQQTRKIGAEEITDSHPIHLMLNLARACESLRGKKNTDGNEKAGHVRPV
FFISQRHHVLTRTVLNIFP*
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mRNA from alignment at scaffold_9:492280..492773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4726 ID=mRNA_4726|Name=jgi.p|Nanoce1779_2|441715|organism=Nannochloropsis oceanica|type=mRNA|length=494bp|location=Sequence derived from alignment at scaffold_9:492280..492773- (Nannochloropsis oceanica)
CTCCAGGACCAGCACACCCTCTTGCTGCGGCAGTATCATGGTGACCGACA
GTGGGGTAAGAAACTAATAGATTGCCCAAGAATAGGACCAAGGCTAGCGT
CGGATGGCTCTGTTTCTTGTGGTAACGATTACCATGTTGTTGTGTTTCTG
TGGGGATGTGTGTGGTAAAAAGACAAGAAAGCACTTGGGTTTTCAGGAGT
ATCTGCCTTGGCGTTGGCAGTCCTTGGGCGCGAGCAACATCGCAGGCATG
CCCCGCCAACAACAAACCAGAAAAATAGGTGCAGAAGAAATAACTGATAG
TCATCCCATTCACCTTATGTTAAATCTAGCCCGTGCCTGCGAAAGTCTTC
GTGGTAAAAAAAATACAGATGGCAACGAAAAAGCAGGGCACGTAAGGCCC
GTGTTCTTCATTTCGCAACGCCACCATGTCCTTACACGGACTGTCCTCAA
TATATTCCCTTGACCTCAATGAAGTACATAAAAACATTTATGAT
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Coding sequence (CDS) from alignment at scaffold_9:492280..492773-

>mRNA_4726 ID=mRNA_4726|Name=jgi.p|Nanoce1779_2|441715|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_9:492280..492773- (Nannochloropsis oceanica)
ATGGCTCTGTTTCTTGTGGTAACGATTACCATGTTGTTGTGTTTCTGTGG
GGATGTGTGTGGTAAAAAGACAAGAAAGCACTTGGGTTTTCAGGAGTATC
TGCCTTGGCGTTGGCAGTCCTTGGGCGCGAGCAACATCGCAGGCATGCCC
CGCCAACAACAAACCAGAAAAATAGGTGCAGAAGAAATAACTGATAGTCA
TCCCATTCACCTTATGTTAAATCTAGCCCGTGCCTGCGAAAGTCTTCGTG
GTAAAAAAAATACAGATGGCAACGAAAAAGCAGGGCACGTAAGGCCCGTG
TTCTTCATTTCGCAACGCCACCATGTCCTTACACGGACTGTCCTCAATAT
ATTCCCTTGA
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Synonyms
Publications