jgi.p|Nanoce1779_2|587658, mRNA_4724 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587658
Unique Name	mRNA_4724
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	884
Alignment location	scaffold_9:480794..481805 +

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Properties


Property Name	Value
TranscriptId	587744
Track	FilteredModels2
ProteinId	587658

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:480794..481805 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587658	gene_4724	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587658	mRNA_4724-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4724	CDS_4724	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:480794..481805+
coding sequence from alignment at scaffold_9:480794..481805+

mRNA sequence

>mRNA_4724 ID=mRNA_4724|Name=jgi.p|Nanoce1779_2|587658|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
CTCCTTTCCCTTCCCTTCCTTCTTCCAAAAACCCTCATCACTCGCCCGAT
GCTTCCTCTTCTTCTTCTTCTTCTCTTTCTTCCCCTTCTCCTTCTTTCCC
TCCCTTGCTATTCTCTTCTTCTCCTTCGCTTTTTCCCCGTCATCCTTCTC
TTCCTTCTCCACCTCCCTTACACCCTCCTTCCACCACCGGGGGGGCGGGG
GGGCGCTGCCTGCTCCTGGCATTTTAAATCGCGCCTCCAAACCTTGAATT
TGTGGAACGTGTGTGTATGGCACCACTATCCGAGACGGACGTGCGACTGT
CATAGTAGAAGACTGCCTCCCATCTATACTTTCGCCATCAGTAGCAGCGC
AGGTAGTATTGGGAGGGAATTGGGCCACGACGAAGTGCCTGTTGATAGAC
GGAGCAACCCGCAGCACCCCTGGTGCGTCCCTTGATGATTGAAGTAGCAC
TTGATAAGAACCGATTTCCGAGGCGTTGCCCAGAAGCACCTCGTAACTGT
CCCCGCTTGCTTCTCCGCATGGCATACCATCCTCATCCTGGTCGTCCTCA
TCCAGCTCCCTCCTTGCTCTCTGGACGTCAGTGACTTGCAGAACGACTCC
TGCCTCTGCGGCTTCATTTATTTTGAGCTTCTTCTTAGCAAGCTCCTCAG
CATTGAACTTATGGTGGTGGGAGGTGAGAGAGGGGCGTGAATTTAGACGG
AGGGAGGGGTAGGAGGTCGAATGGTAGGGGTGGGACGACTTACATCCAGG
GGCATGCGAAAAAGCCACAGCTCTAAGTCCTCATTGGCCGTTAGCTCCTC
CATTGTCAGCGCCGTCCTCACAGGGACCAATGTTCGGTCGTGCGTGCTCA
TGGTCTGAGCAAAAAGCTGTTAGGCAACGTCTGT

protein sequence of jgi.p|Nanoce1779_2|587658

>mRNA_4724-protein ID=mRNA_4724-protein|Name=jgi.p|Nanoce1779_2|587658|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MLPLLLLLLFLPLLLLSLPCYSLLLLRFFPVILLFLLHLPYTLLPPPGGR
GGAACSWHFKSRLQTLNLWNVCVWHHYPRRTCDCHSRRLPPIYTFAISSS
AGSIGRELGHDEVPVDRRSNPQHPWCVP*

mRNA from alignment at scaffold_9:480794..481805+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4724 ID=mRNA_4724|Name=jgi.p|Nanoce1779_2|587658|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at scaffold_9:480794..481805+ (Nannochloropsis oceanica)
CTCCTTTCCCTTCCCTTCCTTCTTCCAAAAACCCTCATCACTCGCCCGAT
GCTTCCTCTTCTTCTTCTTCTTCTCTTTCTTCCCCTTCTCCTTCTTTCCC
TCCCTTGCTATTCTCTTCTTCTCCTTCGCTTTTTCCCCGTCATCCTTCTC
TTCCTTCTCCACCTCCCTTACACCCTCCTTCCACCACCGGGGGGGCGGGG
GGGCGCTGCCTGCTCCTGGCATTTTAAATCGCGCCTCCAAACCTTGAATT
TGTGGAACGTGTGTGTATGGCACCACTATCCGAGACGGACGTGCGACTGT
CATAGTAGAAGACTGCCTCCCATCTATACTTTCGCCATCAGTAGCAGCGC
AGGTAGTATTGGGAGGGAATTGGGCCACGACGAAGTGCCTGTTGATAGAC
GGAGCAACCCGCAGCACCCCTGGTGCGTCCCTTGATGATTGAAGTAGCAC
TTGATAAGAACCGATTTCCGAGGCGTTGCCCAGAAGCACCTCGTAACTGT
CCCCGCTTGCTTCTCCGCATGGCATACCATCCTCATCCTGGTCGTCCTCA
TCCAGCTCCCTCCTTGCTCTCTGGACGTCAGTGACTTGCAGAACGACTCC
TGCCTCTGCGGCTTCATTTATTTTGAGCTTCTTCTTAGCAAGCTCCTCAG
CATTGAACTTATGGTGGTGGGAGGTGAGAGAGGGGCGTGAATTTAGACGG
AGGGAGGGGTAGGAGGTCGAATGGTAGGGGTGGGACGACTTACATCCAGG
GGCATGCGAAAAAGCCACAGCTCTAAGTCCTCATTGGCCGTTAGCTCCTC
CATTGTCAGCGCCGTCCTGTGTGTGGTAGTGTATGTGTATGTTTATGTGT
GCAGTAAGGTGAGTATAGATGGAAATAAAGAAGCACACCTCCGTCCTAGG
TCTCCCGTAGCCAAACGCATGGCTGGAGGCAGGAGGTCACTTACCTCACA
GGGACCAATGTTCGGTCGTGCGTGCTCATGGTCTGAGCAAAAAGCTGTTA
GGCAACGTCTGT

Coding sequence (CDS) from alignment at scaffold_9:480794..481805+

>mRNA_4724 ID=mRNA_4724|Name=jgi.p|Nanoce1779_2|587658|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_9:480794..481805+ (Nannochloropsis oceanica)
ATGCTTCCTCTTCTTCTTCTTCTTCTCTTTCTTCCCCTTCTCCTTCTTTC
CCTCCCTTGCTATTCTCTTCTTCTCCTTCGCTTTTTCCCCGTCATCCTTC
TCTTCCTTCTCCACCTCCCTTACACCCTCCTTCCACCACCGGGGGGGCGG
GGGGGCGCTGCCTGCTCCTGGCATTTTAAATCGCGCCTCCAAACCTTGAA
TTTGTGGAACGTGTGTGTATGGCACCACTATCCGAGACGGACGTGCGACT
GTCATAGTAGAAGACTGCCTCCCATCTATACTTTCGCCATCAGTAGCAGC
GCAGGTAGTATTGGGAGGGAATTGGGCCACGACGAAGTGCCTGTTGATAG
ACGGAGCAACCCGCAGCACCCCTGGTGCGTCCCTTGA

Synonyms

Publications