jgi.p|Nanoce1779_2|554656, mRNA_4723 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554656
Unique Name	mRNA_4723
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1826
Alignment location	scaffold_9:478649..480615 +

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Properties


Property Name	Value
TranscriptId	554742
Track	FilteredModels2
ProteinId	554656

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:478649..480615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554656	gene_4723	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554656	mRNA_4723-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4723	CDS_4723	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:478649..480615+
coding sequence from alignment at scaffold_9:478649..480615+

mRNA sequence

>mRNA_4723 ID=mRNA_4723|Name=jgi.p|Nanoce1779_2|554656|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp
GTCCAAATTAGAAGGTGTCAGTGCGTGGTGGAGGGGGGAGGTCAAAAAAG
AGGATCTTCCCCATTCGTCGGCCTCTTTTTGCGTGAAATTGAGGCAGAAC
GGCCACGTAAAATACCAGCAGCCTGATCAATAAGCACCTTTTGAATTTTC
TTGGACAAAAGCGCAAGGGAGTCACATGACGGTGGAACAAAATCATACCG
CCAGGAGTTCGAGCCAAGCCGACGGTTCGCAACACAGCCCTTCCGTCCAA
ACACGGACATGTCATCTTCCAAAGCTTATATTGGCCCGTCCAAGAGTCCT
CTCATTCCATTTGCGACATTTAAATATGCGGAAACCCCTTTGAAAGAGTG
TACACCGTTGACCAAGCCAAGCACCGAAGGTCCCAGCGATGACTCGAAGT
CCTTCCCAATCTCACTTCCCCATCCTGATTGCTTACATCCAAGCCCTCCC
ACACGTTCACGCACAGGCCAAGCGGACGATAATGCACGGCCGACGAAAGG
CAGAGAACCAGGCTGCGCTCTTGGCCCGAAGCGAGGCAGAAAAAGAAGCC
GCCAGGGACAAGGTCCACAAGTACAAGCAGCTTGTCGCCCTCGCCTTGAA
GCAACGACGTGAGGCGAATGATCAAAACCTCACTGTCACAACGAGAAAGG
AGTTGGAGGAGGCATTGGCCTTGTCGGCGCAGCTGTTGCGTGTAAATCCC
GACGTGTACACATTATGGAATCATCGCAAGGAAGCCATAGCCGCCAGTCA
AGTGGTGCGGCATGAGCTTGAAGGAGCATACGCGAGAGAAACGGGGGGAG
AATTGGAAAATGCCTTGCCACCAAACTCCTTTCTACAGACAGAGTTAAGC
ATGATAGCAGAGTGCATTCAAAAGAATCCGAAGTCCTACGGTGCATGGCA
TCACCGCCGCTGGCTTCTGGAGCATGCCTTTCCTTGTACTGCTTCCTCAC
CCTCTTGCTCCTCCGCTACTTCGCCTTCGCAACTTGTTGCCACACTTGAT
AAAGAGGTAGCCTTGTGTGCGCAACTCTTGGACGTGGACGAACGAAATTT
TCACTGTTGGAACTATCGACGGTGGGTGGTGAGTCAGCACCCTGGGCGGA
GTGCCACGGACGAATTTGAGTTTTCAACGGCCAGGATCTATAAGAACTTC
AGCAACTACTCGGCCTTCCATCACCGCGCGGCCTACCTTTCTGGTCACTT
GACGGAATCTGGACAAACTTTAAACCCTAAAGTGTTCCTCAGGCAAGAAC
TAGACATGGTACAGCAAGCGTTTTTCACGGAGCCGGACGATCAAACCGCC
TGGTGGTACCACCAGTACTTAATCTCTCTCGTCCTGAAGGAGGGAGGGAG
GGAGGGAGGGGAGGAGGGAGGGAAGGAGTTTGTCCGGGAGGTTTTGGAGG
GGGAGGTGGAGATTATTAGGGGGCTGGCGGAGGAGGGGGAGGAGGAAAGA
GGGGCAAAGGGGAAGGGAGGAGGGTATCGGTGGGCGGTGCTGACGTTGGC
GTCCTTGTTGAGGCAGTTGGCATCGTCTCAGGGGGAGGAGGGGGAGGAAG
GGAGAGGGGAGGTATTGCGGAAAGAGAGTAGAGGCCTGTTTGAACGATTG
GGGAGAATGGATCCGGACCATGCGAAGAGGTATGAGAATATTGTGGTGAG
CTCATTTTGAGGAGAGGAGGGAGGGGAGGGACGGAAGGATGCGGAGGGCA
GAAAGATTTTGGCTGGTTCTTCTCAGGAGGATGCAAAGAGTAGAGGCTGG
GTCATTGTACATGGTGGATGGATCTTAGGCGGCAAGTTAGCAGTCGCTAG
AAGGAAGGAATTTAAGCAAACTGTTG

protein sequence of jgi.p|Nanoce1779_2|554656

>mRNA_4723-protein ID=mRNA_4723-protein|Name=jgi.p|Nanoce1779_2|554656|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MTRSPSQSHFPILIAYIQALPHVHAQAKRTIMHGRRKAENQAALLARSEA
EKEAARDKVHKYKQLVALALKQRREANDQNLTVTTRKELEEALALSAQLL
RVNPDVYTLWNHRKEAIAASQVVRHELEGAYARETGGELENALPPNSFLQ
TELSMIAECIQKNPKSYGAWHHRRWLLEHAFPCTASSPSCSSATSPSQLV
ATLDKEVALCAQLLDVDERNFHCWNYRRWVVSQHPGRSATDEFEFSTARI
YKNFSNYSAFHHRAAYLSGHLTESGQTLNPKVFLRQELDMVQQAFFTEPD
DQTAWWYHQYLISLVLKEGGREGGEEGGKEFVREVLEGEVEIIRGLAEEG
EEERGAKGKGGGYRWAVLTLASLLRQLASSQGEEGEEGRGEVLRKESRGL
FERLGRMDPDHAKRYENIVVSSF*

mRNA from alignment at scaffold_9:478649..480615+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4723 ID=mRNA_4723|Name=jgi.p|Nanoce1779_2|554656|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp|location=Sequence derived from alignment at scaffold_9:478649..480615+ (Nannochloropsis oceanica)
GTCCAAATTAGAAGGTGTCAGTGCGTGGTGGAGGGGGGAGGTCAAAAAAG
AGGATCTTCCCCATTCGTCGGCCTCTTTTTGCGTGAAATTGAGGCAGAAC
GGCCACGTAAAATACCAGCAGCCTGATCAATAAGCACCTTTTGAATTTTC
TTGGACAAAAGCGCAAGGGAGTCACATGACGGTGGAACAAAATCATACCG
CCAGGAGTTCGAGCCAAGCCGACGGTTCGCAACACAGCCCTTCCGTCCAA
ACACGGACATGTCATCTTCCAAAGCTTATATTGGCCCGTCCAAGAGTCCT
CTCATTCCATTTGCGACATTTAAATATGCGGAAACCCCTTTGAAAGAGTG
TACACCGTTGACCAAGCCAAGCACCGAAGGTCCCAGCGATGACTCGAAGT
CCTTCCCAATCTCACTTCCCCATCCTGATTGCTTACATCCAAGCCCTCCC
ACACGTTCACGCACAGGCCAAGCGGACGATAATGCACGGCCGACGAAAGG
CAGAGAACCAGGCTGCGCTCTTGGCCCGAAGCGAGGCAGAAAAAGAAGCC
GCCAGGGACAAGGTCCACAAGTACAAGCAGCTTGTCGCCCTCGCCTTGAA
GCAACGACGTGAGGCGAATGATCAAAACCTCACTGTCACAACGAGAAAGG
AGTTGGAGGAGGCATTGGCCTTGTCGGCGCAGCTGTTGCGTGTAAATCCC
GACGTGTACACATTATGGAATCATCGCAAGGAAGCCATAGCCGCCAGTCA
AGTGGTGCGGCATGAGCTTGAAGGAGCATACGCGAGAGAAACGGGGGGAG
AATTGGAAAATGCCTTGCCACCAAACTCCTTTCTACAGACAGAGTTAAGC
ATGATAGCAGAGTGCATTCAAAAGAATCCGAAGTCCTACGGTGCATGGCA
TCACCGCCGCTGGCTTCTGGAGCATGCCTTTCCTTGTACTGCTTCCTCAC
CCTCTTGCTCCTCCGCTACTTCGCCTTCGCAACTTGTTGCCACACTTGAT
AAAGAGGTAGCCTTGTGTGCGCAACTCTTGGACGTGGACGAACGAAATTT
TCACTGTTGGAACTATCGACGGTGGGTGGTGAGTCAGCACCCTGGGCGGA
GTGCCACGGACGAATTTGAGTTTTCAACGGCCAGGATCTATAAGAACTTC
AGGTCAGTGACAGAAGGGGGGAAGTAAAGAATGTGTGATTTAACGCAATC
TAGTGGACTGCATGGGAAAATACATTTTTATTGATTCGTAACATGGAAAC
CCGATACATTTTCCTCTCTCTCCCTCTCTCCCTCCTTCCCTAGCAACTAC
TCGGCCTTCCATCACCGCGCGGCCTACCTTTCTGGTCACTTGACGGAATC
TGGACAAACTTTAAACCCTAAAGTGTTCCTCAGGCAAGAACTAGACATGG
TACAGCAAGCGTTTTTCACGGAGCCGGACGATCAAACCGCCTGGTGGTAC
CACCAGTACTTAATCTCTCTCGTCCTGAAGGAGGGAGGGAGGGAGGGAGG
GGAGGAGGGAGGGAAGGAGTTTGTCCGGGAGGTTTTGGAGGGGGAGGTGG
AGATTATTAGGGGGCTGGCGGAGGAGGGGGAGGAGGAAAGAGGGGCAAAG
GGGAAGGGAGGAGGGTATCGGTGGGCGGTGCTGACGTTGGCGTCCTTGTT
GAGGCAGTTGGCATCGTCTCAGGGGGAGGAGGGGGAGGAAGGGAGAGGGG
AGGTATTGCGGAAAGAGAGTAGAGGCCTGTTTGAACGATTGGGGAGAATG
GATCCGGACCATGCGAAGAGGTATGAGAATATTGTGGTGAGCTCATTTTG
AGGAGAGGAGGGAGGGGAGGGACGGAAGGATGCGGAGGGCAGAAAGATTT
TGGCTGGTTCTTCTCAGGAGGATGCAAAGAGTAGAGGCTGGGTCATTGTA
CATGGTGGATGGATCTTAGGCGGCAAGTTAGCAGTCGCTAGAAGGAAGGA
ATTTAAGCAAACTGTTG

Coding sequence (CDS) from alignment at scaffold_9:478649..480615+

>mRNA_4723 ID=mRNA_4723|Name=jgi.p|Nanoce1779_2|554656|organism=Nannochloropsis oceanica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_9:478649..480615+ (Nannochloropsis oceanica)
ATGACTCGAAGTCCTTCCCAATCTCACTTCCCCATCCTGATTGCTTACAT
CCAAGCCCTCCCACACGTTCACGCACAGGCCAAGCGGACGATAATGCACG
GCCGACGAAAGGCAGAGAACCAGGCTGCGCTCTTGGCCCGAAGCGAGGCA
GAAAAAGAAGCCGCCAGGGACAAGGTCCACAAGTACAAGCAGCTTGTCGC
CCTCGCCTTGAAGCAACGACGTGAGGCGAATGATCAAAACCTCACTGTCA
CAACGAGAAAGGAGTTGGAGGAGGCATTGGCCTTGTCGGCGCAGCTGTTG
CGTGTAAATCCCGACGTGTACACATTATGGAATCATCGCAAGGAAGCCAT
AGCCGCCAGTCAAGTGGTGCGGCATGAGCTTGAAGGAGCATACGCGAGAG
AAACGGGGGGAGAATTGGAAAATGCCTTGCCACCAAACTCCTTTCTACAG
ACAGAGTTAAGCATGATAGCAGAGTGCATTCAAAAGAATCCGAAGTCCTA
CGGTGCATGGCATCACCGCCGCTGGCTTCTGGAGCATGCCTTTCCTTGTA
CTGCTTCCTCACCCTCTTGCTCCTCCGCTACTTCGCCTTCGCAACTTGTT
GCCACACTTGATAAAGAGGTAGCCTTGTGTGCGCAACTCTTGGACGTGGA
CGAACGAAATTTTCACTGTTGGAACTATCGACGGTGGGTGGTGAGTCAGC
ACCCTGGGCGGAGTGCCACGGACGAATTTGAGTTTTCAACGGCCAGGATC
TATAAGAACTTCAGCAACTACTCGGCCTTCCATCACCGCGCGGCCTACCT
TTCTGGTCACTTGACGGAATCTGGACAAACTTTAAACCCTAAAGTGTTCC
TCAGGCAAGAACTAGACATGGTACAGCAAGCGTTTTTCACGGAGCCGGAC
GATCAAACCGCCTGGTGGTACCACCAGTACTTAATCTCTCTCGTCCTGAA
GGAGGGAGGGAGGGAGGGAGGGGAGGAGGGAGGGAAGGAGTTTGTCCGGG
AGGTTTTGGAGGGGGAGGTGGAGATTATTAGGGGGCTGGCGGAGGAGGGG
GAGGAGGAAAGAGGGGCAAAGGGGAAGGGAGGAGGGTATCGGTGGGCGGT
GCTGACGTTGGCGTCCTTGTTGAGGCAGTTGGCATCGTCTCAGGGGGAGG
AGGGGGAGGAAGGGAGAGGGGAGGTATTGCGGAAAGAGAGTAGAGGCCTG
TTTGAACGATTGGGGAGAATGGATCCGGACCATGCGAAGAGGTATGAGAA
TATTGTGGTGAGCTCATTTTGAATGACTCGAAGTCCTTCCCAATCTCACT
TCCCCATCCTGATTGCTTACATCCAAGCCCTCCCACACGTTCACGCACAG
GCCAAGCGGACGATAATGCACGGCCGACGAAAGGCAGAGAACCAGGCTGC
GCTCTTGGCCCGAAGCGAGGCAGAAAAAGAAGCCGCCAGGGACAAGGTCC
ACAAGTACAAGCAGCTTGTCGCCCTCGCCTTGAAGCAACGACGTGAGGCG
AATGATCAAAACCTCACTGTCACAACGAGAAAGGAGTTGGAGGAGGCATT
GGCCTTGTCGGCGCAGCTGTTGCGTGTAAATCCCGACGTGTACACATTAT
GGAATCATCGCAAGGAAGCCATAGCCGCCAGTCAAGTGGTGCGGCATGAG
CTTGAAGGAGCATACGCGAGAGAAACGGGGGGAGAATTGGAAAATGCCTT
GCCACCAAACTCCTTTCTACAGACAGAGTTAAGCATGATAGCAGAGTGCA
TTCAAAAGAATCCGAAGTCCTACGGTGCATGGCATCACCGCCGCTGGCTT
CTGGAGCATGCCTTTCCTTGTACTGCTTCCTCACCCTCTTGCTCCTCCGC
TACTTCGCCTTCGCAACTTGTTGCCACACTTGATAAAGAGGTAGCCTTGT
GTGCGCAACTCTTGGACGTGGACGAACGAAATTTTCACTGTTGGAACTAT
CGACGGTGGGTGGTGAGTCAGCACCCTGGGCGGAGTGCCACGGACGAATT
TGAGTTTTCAACGGCCAGGATCTATAAGAACTTCAGCAACTACTCGGCCT
TCCATCACCGCGCGGCCTACCTTTCTGGTCACTTGACGGAATCTGGACAA
ACTTTAAACCCTAAAGTGTTCCTCAGGCAAGAACTAGACATGGTACAGCA
AGCGTTTTTCACGGAGCCGGACGATCAAACCGCCTGGTGGTACCACCAGT
ACTTAATCTCTCTCGTCCTGAAGGAGGGAGGGAGGGAGGGAGGGGAGGAG
GGAGGGAAGGAGTTTGTCCGGGAGGTTTTGGAGGGGGAGGTGGAGATTAT
TAGGGGGCTGGCGGAGGAGGGGGAGGAGGAAAGAGGGGCAAAGGGGAAGG
GAGGAGGGTATCGGTGGGCGGTGCTGACGTTGGCGTCCTTGTTGAGGCAG
TTGGCATCGTCTCAGGGGGAGGAGGGGGAGGAAGGGAGAGGGGAGGTATT
GCGGAAAGAGAGTAGAGGCCTGTTTGAACGATTGGGGAGAATGGATCCGG
ACCATGCGAAGAGGTATGAGAATATTGTGGTGAGCTCATTTTGA

Synonyms

Publications