jgi.p|Nanoce1779_2|629964, mRNA_4722 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629964
Unique NamemRNA_4722
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1713
Alignment locationscaffold_9:476901..478613 -

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Properties
Property NameValue
TranscriptId630050
TrackFilteredModels2
ProteinId629964
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:476901..478613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629964gene_4722Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629964mRNA_4722-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4722CDS_4722Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4722 ID=mRNA_4722|Name=jgi.p|Nanoce1779_2|629964|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
ACAGATCGACCAACCATGCGATATATTTCGGTCCTTCTCCTCCTGCTCCA
TTGGTTCTTAACTACGACAAATGCCAACCCGGTGACCGCCTGGAACGACG
TACTGCAAGATCAGGTTCGCGGTAATAAGATCGACCCCAACACGGCTTGC
CGCTATGGTGCTCTCTTGCACACGGCACAATGGCAGGCCTTCCGAGACAG
CATTGGCCAGGGTGCAATGCCTGAGACCCAGGCGGCGGCAGTCGCGGCAG
TTGCGAGCGCGGGCAAAACGGTGCTCCTCTCTATCTTCCCCAACGTGACT
GATAGAGTAAATGAGTTGTATGCCCAGCAAGCAGCAGCAGCGGTGCCCAC
AGACCGAAGCGCCACCCTCACTAGGGCGCTACTAAATGACCGCGCTAAGG
ACGGTTCTAGCCCCGCCCCGCCTCCGTACAAAGGGGTGGAGGAGGTGGGC
AAGTGGCGCCCCACTCCTCCCGCCTTCAAGGCAGGCTTGACGCCGCACTG
GGGTCAGGTCAAGCCTTTTAATTTAGAGAAGGGCGATCAATTTCGTGTTG
CTGCACCGCCAGCCTTGGACTCGCTCGCCTTTAAAATGAGTTACCTAGAG
GTGAAGCAGGTGGGCACGAAAAATTCCACTTCACGCTCTGCGGACCAAAC
CGAAACTGTGTACTTCTGGAGCGGGGCAAACATTGAGATGCCCTGGTATG
GTGTTCTCAAGCAAGTGGTTGAAAACTTCACCCTCGCCGAAAGCGTCAAG
GCCTACGCCTGCATGGCCACCGCGATGGCTGACGCCCGCATTGCTGCTTT
TGACTCAAAATATTTTTACAACAGCTGGCGGCCCGTGACTTCGATTCAGG
TTGGCAATAATGTGACAGACTTCCCGGCGGATCCGGCATTCGAGAGTGAA
ATTATGACACCGCCCCACCCTGAATATCCCCAGGGGCACACTGCCACTGC
AGAGGCAGCCGCCACCGTGTTGAGGGCGATTGCTGGGAAAGACGAGGTGC
CCTTTGTACTGACCTCAGAGAAAGTTCCGGGGAAGATTCGCGCCTACCCT
TCCTTCAGCGCTGCCTCATATGAAATTAAAGAGAGTCGCACTATGGCAGG
GGTTCATTTTCGTTTTAGCGGAGACCGGAGCTTGCCGTTGGGTCAAAACG
TGGGGAATGCTGCAGTGGTGGCGTACTCTTACAAGCCGGTCGCAGCTCCC
GGGTTGCCGGCGAAAAAGGTGAAGAGTATGAACAAAAATCTGTTTCGACG
TGAATAAGATGACGAGAGTTATGGTGTGCGGAAGAGAAGAGGCCGGTCGT
GCCGGCGTGTTGAAAGCAATATATTGTGAATGAAGTCAAAACAAGAAATA
CTGAAATGAGAAATGAATGGCAGACTGGCGATTACTGACAGCGACAGAAC
ATATTTTGTCGTGAGAAGGAACGTAGAGAGAAATCTCTACGTCAATTATG
CCTTTTCAAAACACGGTCGCTCAGATGTCCATATAACGTCACTGTTTGTC
CCCATTGATTCACAAGTTTGTAATCGGTAGAGCACGTATAACTGTCATTT
CTATCGAGTCACGTCTCAATATGATGGCACCTGGCTGGTGTCTTTTTTCC
CGGGCACTATGTTTCAAAGGACATAGAGGTAGGAGGAGCGACATGCAAAG
GAGCAAAGGGATCGCGGGAAATAGATTCATCCAGGATCGTCTATCTTGAT
CTAACAAAGAGTC
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protein sequence of jgi.p|Nanoce1779_2|629964

>mRNA_4722-protein ID=mRNA_4722-protein|Name=jgi.p|Nanoce1779_2|629964|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MRYISVLLLLLHWFLTTTNANPVTAWNDVLQDQVRGNKIDPNTACRYGAL
LHTAQWQAFRDSIGQGAMPETQAAAVAAVASAGKTVLLSIFPNVTDRVNE
LYAQQAAAAVPTDRSATLTRALLNDRAKDGSSPAPPPYKGVEEVGKWRPT
PPAFKAGLTPHWGQVKPFNLEKGDQFRVAAPPALDSLAFKMSYLEVKQVG
TKNSTSRSADQTETVYFWSGANIEMPWYGVLKQVVENFTLAESVKAYACM
ATAMADARIAAFDSKYFYNSWRPVTSIQVGNNVTDFPADPAFESEIMTPP
HPEYPQGHTATAEAAATVLRAIAGKDEVPFVLTSEKVPGKIRAYPSFSAA
SYEIKESRTMAGVHFRFSGDRSLPLGQNVGNAAVVAYSYKPVAAPGLPAK
KVKSMNKNLFRRE*
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mRNA from alignment at scaffold_9:476901..478613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4722 ID=mRNA_4722|Name=jgi.p|Nanoce1779_2|629964|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp|location=Sequence derived from alignment at scaffold_9:476901..478613- (Nannochloropsis oceanica)
ACAGATCGACCAACCATGCGATATATTTCGGTCCTTCTCCTCCTGCTCCA
TTGGTTCTTAACTACGACAAATGCCAACCCGGTGACCGCCTGGAACGACG
TACTGCAAGATCAGGTTCGCGGTAATAAGATCGACCCCAACACGGCTTGC
CGCTATGGTGCTCTCTTGCACACGGCACAATGGCAGGCCTTCCGAGACAG
CATTGGCCAGGGTGCAATGCCTGAGACCCAGGCGGCGGCAGTCGCGGCAG
TTGCGAGCGCGGGCAAAACGGTGCTCCTCTCTATCTTCCCCAACGTGACT
GATAGAGTAAATGAGTTGTATGCCCAGCAAGCAGCAGCAGCGGTGCCCAC
AGACCGAAGCGCCACCCTCACTAGGGCGCTACTAAATGACCGCGCTAAGG
ACGGTTCTAGCCCCGCCCCGCCTCCGTACAAAGGGGTGGAGGAGGTGGGC
AAGTGGCGCCCCACTCCTCCCGCCTTCAAGGCAGGCTTGACGCCGCACTG
GGGTCAGGTCAAGCCTTTTAATTTAGAGAAGGGCGATCAATTTCGTGTTG
CTGCACCGCCAGCCTTGGACTCGCTCGCCTTTAAAATGAGTTACCTAGAG
GTGAAGCAGGTGGGCACGAAAAATTCCACTTCACGCTCTGCGGACCAAAC
CGAAACTGTGTACTTCTGGAGCGGGGCAAACATTGAGATGCCCTGGTATG
GTGTTCTCAAGCAAGTGGTTGAAAACTTCACCCTCGCCGAAAGCGTCAAG
GCCTACGCCTGCATGGCCACCGCGATGGCTGACGCCCGCATTGCTGCTTT
TGACTCAAAATATTTTTACAACAGCTGGCGGCCCGTGACTTCGATTCAGG
TTGGCAATAATGTGACAGACTTCCCGGCGGATCCGGCATTCGAGAGTGAA
ATTATGACACCGCCCCACCCTGAATATCCCCAGGGGCACACTGCCACTGC
AGAGGCAGCCGCCACCGTGTTGAGGGCGATTGCTGGGAAAGACGAGGTGC
CCTTTGTACTGACCTCAGAGAAAGTTCCGGGGAAGATTCGCGCCTACCCT
TCCTTCAGCGCTGCCTCATATGAAATTAAAGAGAGTCGCACTATGGCAGG
GGTTCATTTTCGTTTTAGCGGAGACCGGAGCTTGCCGTTGGGTCAAAACG
TGGGGAATGCTGCAGTGGTGGCGTACTCTTACAAGCCGGTCGCAGCTCCC
GGGTTGCCGGCGAAAAAGGTGAAGAGTATGAACAAAAATCTGTTTCGACG
TGAATAAGATGACGAGAGTTATGGTGTGCGGAAGAGAAGAGGCCGGTCGT
GCCGGCGTGTTGAAAGCAATATATTGTGAATGAAGTCAAAACAAGAAATA
CTGAAATGAGAAATGAATGGCAGACTGGCGATTACTGACAGCGACAGAAC
ATATTTTGTCGTGAGAAGGAACGTAGAGAGAAATCTCTACGTCAATTATG
CCTTTTCAAAACACGGTCGCTCAGATGTCCATATAACGTCACTGTTTGTC
CCCATTGATTCACAAGTTTGTAATCGGTAGAGCACGTATAACTGTCATTT
CTATCGAGTCACGTCTCAATATGATGGCACCTGGCTGGTGTCTTTTTTCC
CGGGCACTATGTTTCAAAGGACATAGAGGTAGGAGGAGCGACATGCAAAG
GAGCAAAGGGATCGCGGGAAATAGATTCATCCAGGATCGTCTATCTTGAT
CTAACAAAGAGTC
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Coding sequence (CDS) from alignment at scaffold_9:476901..478613-

>mRNA_4722 ID=mRNA_4722|Name=jgi.p|Nanoce1779_2|629964|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_9:476901..478613- (Nannochloropsis oceanica)
ATGCGATATATTTCGGTCCTTCTCCTCCTGCTCCATTGGTTCTTAACTAC
GACAAATGCCAACCCGGTGACCGCCTGGAACGACGTACTGCAAGATCAGG
TTCGCGGTAATAAGATCGACCCCAACACGGCTTGCCGCTATGGTGCTCTC
TTGCACACGGCACAATGGCAGGCCTTCCGAGACAGCATTGGCCAGGGTGC
AATGCCTGAGACCCAGGCGGCGGCAGTCGCGGCAGTTGCGAGCGCGGGCA
AAACGGTGCTCCTCTCTATCTTCCCCAACGTGACTGATAGAGTAAATGAG
TTGTATGCCCAGCAAGCAGCAGCAGCGGTGCCCACAGACCGAAGCGCCAC
CCTCACTAGGGCGCTACTAAATGACCGCGCTAAGGACGGTTCTAGCCCCG
CCCCGCCTCCGTACAAAGGGGTGGAGGAGGTGGGCAAGTGGCGCCCCACT
CCTCCCGCCTTCAAGGCAGGCTTGACGCCGCACTGGGGTCAGGTCAAGCC
TTTTAATTTAGAGAAGGGCGATCAATTTCGTGTTGCTGCACCGCCAGCCT
TGGACTCGCTCGCCTTTAAAATGAGTTACCTAGAGGTGAAGCAGGTGGGC
ACGAAAAATTCCACTTCACGCTCTGCGGACCAAACCGAAACTGTGTACTT
CTGGAGCGGGGCAAACATTGAGATGCCCTGGTATGGTGTTCTCAAGCAAG
TGGTTGAAAACTTCACCCTCGCCGAAAGCGTCAAGGCCTACGCCTGCATG
GCCACCGCGATGGCTGACGCCCGCATTGCTGCTTTTGACTCAAAATATTT
TTACAACAGCTGGCGGCCCGTGACTTCGATTCAGGTTGGCAATAATGTGA
CAGACTTCCCGGCGGATCCGGCATTCGAGAGTGAAATTATGACACCGCCC
CACCCTGAATATCCCCAGGGGCACACTGCCACTGCAGAGGCAGCCGCCAC
CGTGTTGAGGGCGATTGCTGGGAAAGACGAGGTGCCCTTTGTACTGACCT
CAGAGAAAGTTCCGGGGAAGATTCGCGCCTACCCTTCCTTCAGCGCTGCC
TCATATGAAATTAAAGAGAGTCGCACTATGGCAGGGGTTCATTTTCGTTT
TAGCGGAGACCGGAGCTTGCCGTTGGGTCAAAACGTGGGGAATGCTGCAG
TGGTGGCGTACTCTTACAAGCCGGTCGCAGCTCCCGGGTTGCCGGCGAAA
AAGGTGAAGAGTATGAACAAAAATCTGTTTCGACGTGAATAA
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Synonyms
Publications