jgi.p|Nanoce1779_2|587649, mRNA_4720 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587649
Unique NamemRNA_4720
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length347
Alignment locationscaffold_9:475126..475472 +

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Properties
Property NameValue
TranscriptId587735
TrackFilteredModels2
ProteinId587649
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:475126..475472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587649gene_4720Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587649mRNA_4720-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4720CDS_4720Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4720 ID=mRNA_4720|Name=jgi.p|Nanoce1779_2|587649|organism=Nannochloropsis oceanica|type=mRNA|length=347bp
TAAAATGCTCTTGGCTTCGAGGCTCTTCCTTAAATTACAGTGTCACGCGC
TGGTTCTGCCCATATTGCCTCCAGGGAGAAGCAAAGGACGACCAGCCCTA
GCTCTTCTTCCTTTACTTCGCCTTCACCAGTTGGCGGCATCTCCATCTGA
ACTTCTTTCGCTCTTCGAATTATTTTCTACTTTCTCATTCACCAAGTCCA
TTTCCGGTGTAAAGCTACATCCCACACATTTTTCATTTTCTCTTTATATG
CCTACCACACTCTCTCCTCGCCTTTTTTTGTATTGCAAAGATTTAAAATG
ACAGCATACCTACATCCAATGCCTGTTTCTTGCTTGATCGGTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|587649

>mRNA_4720-protein ID=mRNA_4720-protein|Name=jgi.p|Nanoce1779_2|587649|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MLLASRLFLKLQCHALVLPILPPGRSKGRPALALLPLLRLHQLAASPSEL
LSLFELFSTFSFTKSISGVKLHPTHFSFSLYMPTTLSPRLFLYCKDLK*
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mRNA from alignment at scaffold_9:475126..475472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4720 ID=mRNA_4720|Name=jgi.p|Nanoce1779_2|587649|organism=Nannochloropsis oceanica|type=mRNA|length=347bp|location=Sequence derived from alignment at scaffold_9:475126..475472+ (Nannochloropsis oceanica)
TAAAATGCTCTTGGCTTCGAGGCTCTTCCTTAAATTACAGTGTCACGCGC
TGGTTCTGCCCATATTGCCTCCAGGGAGAAGCAAAGGACGACCAGCCCTA
GCTCTTCTTCCTTTACTTCGCCTTCACCAGTTGGCGGCATCTCCATCTGA
ACTTCTTTCGCTCTTCGAATTATTTTCTACTTTCTCATTCACCAAGTCCA
TTTCCGGTGTAAAGCTACATCCCACACATTTTTCATTTTCTCTTTATATG
CCTACCACACTCTCTCCTCGCCTTTTTTTGTATTGCAAAGATTTAAAATG
ACAGCATACCTACATCCAATGCCTGTTTCTTGCTTGATCGGTCCCTC
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Coding sequence (CDS) from alignment at scaffold_9:475126..475472+

>mRNA_4720 ID=mRNA_4720|Name=jgi.p|Nanoce1779_2|587649|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_9:475126..475472+ (Nannochloropsis oceanica)
ATGCTCTTGGCTTCGAGGCTCTTCCTTAAATTACAGTGTCACGCGCTGGT
TCTGCCCATATTGCCTCCAGGGAGAAGCAAAGGACGACCAGCCCTAGCTC
TTCTTCCTTTACTTCGCCTTCACCAGTTGGCGGCATCTCCATCTGAACTT
CTTTCGCTCTTCGAATTATTTTCTACTTTCTCATTCACCAAGTCCATTTC
CGGTGTAAAGCTACATCCCACACATTTTTCATTTTCTCTTTATATGCCTA
CCACACTCTCTCCTCGCCTTTTTTTGTATTGCAAAGATTTAAAATGA
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Synonyms
Publications