jgi.p|Nanoce1779_2|523422, mRNA_472 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523422
Unique NamemRNA_472
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1482
Alignment locationscaffold_3:1144181..1145807 -

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Properties
Property NameValue
TranscriptId523508
TrackFilteredModels2
ProteinId523422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1144181..1145807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523422gene_472Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523422mRNA_472-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_472CDS_472Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_472 ID=mRNA_472|Name=jgi.p|Nanoce1779_2|523422|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
ATGGTCAAGTCCCGCTTTGGCAAGATCCGTGCCACGGTATTTCCGATCGA
AAACAAGGAATGCCGCAAGTTTTTTATGATGAGCGGGATGATGTTTTTTA
TTATCTACGTTTACACGGTTGTCCGTGACACGAAGGACACGCTCATCGTC
TCGTCCTGCGGGGCCGAAGCCATTACATTCCTCAAGGTTTACGGGGTGTT
GCCTGCCTCGGCCTTGTTCATGGTTGCGTATGCCAAAGCATCGAATGCAC
TGAGTAAAAAGACATTATTCTATGCGACATCCGCTCCCTTCTTCATTTTT
TATGCGGTGTTCTGCACGCTGATCTACCCGAATCGTAACCTGTTGATGCC
GAACATTCCCGCGCAAGCAGGGGGGTTGGGGTTTATGATTTCTCTGGTCA
AGAATTGGGATTATTCCTTGTTCTATGTCGTGTCCGAGTTGTTCGGGAGT
GTGGGTGTCTCGGTGCTCTTCTGGCAGCTCGCGAACGAGATCATTAAGGT
GGACGAAGCTAAGCGTTTTTATCCTCTATTTGGTCAGCTGGCCAATATTG
CGCCTATTGCTGCAGGGCAGACGGTTGTGCTATCTTCGCACATGACTGAC
CCTATGAGTAAAGACCCTTTCCTGAAGAGCATTCAGTTAATTACTGTCTT
TATTATGATCTCGGGGGCGGCGATTATGGCCCTATACAAGGGGATTACCA
CGCTGGTGGACCAGGAGAACGCGGCAGCGAGTGCAAAAGGGGGTGAGGGG
ACCGCGTCAGCCTCGGCTGTGGCGAGCAAGAAGAAGAGAAAGCCCAAGAT
GAGCCTGGGGGAAAGCTTTAAGTTCCTGCTGACCAACCGGTATTTGGCGT
GTATGGCGATCCTGGTGGTGTCGTATGGCCTGGCCATCAATTTCACCGAG
GTCATGTGGAAGAGCCAAGTGAAGCTCCTCTACCAAGACAAGCGAAAGTA
CCAGCAGTTCATGGGCAACTATTCCACGATGATGGGAGCCACCACCTTCG
TCGTCATCTTCTTTGGGTCGCAAATCGTCAAGACTTTTGGAATGAAAGTT
GGAGCCTTGACCACTCCCATCATGCTTGGCTTGTTGGCTGCACCCTTTTT
CGGGTACATTATATTTGGTGGAATTTCGAGCAAGGGAGTATCGTCACCCA
AGGCCCTGCAGACAGCGGTGTGGGTTGGATTGGTCCAGAATATCTTGTCG
AAATCGATTAAGTATGCTTTGTTTGATCCCACCAAGGAGATGGCTTACAT
CCCCTTGGGGCAGGAGGAGAAGACCAAGGGCAAGGCCGCGATTGATGTGC
TGGCGGCGCGTATCGGGAAGAGTGGTGGGGCGCTGTTACAGCAGGCGATT
GTCCTCTTCTTTGGGAATATCATTGATGGGGCCCCAGTGGTGGTGGGCCT
GTTTTATATCGTCATTTTTGCCTGGCTGTTCGCCGCCAATTCATTGGGCA
ACCAATTCGAAGAGGTGTCCAAAAATAAGTAA
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protein sequence of jgi.p|Nanoce1779_2|523422

>mRNA_472-protein ID=mRNA_472-protein|Name=jgi.p|Nanoce1779_2|523422|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MVKSRFGKIRATVFPIENKECRKFFMMSGMMFFIIYVYTVVRDTKDTLIV
SSCGAEAITFLKVYGVLPASALFMVAYAKASNALSKKTLFYATSAPFFIF
YAVFCTLIYPNRNLLMPNIPAQAGGLGFMISLVKNWDYSLFYVVSELFGS
VGVSVLFWQLANEIIKVDEAKRFYPLFGQLANIAPIAAGQTVVLSSHMTD
PMSKDPFLKSIQLITVFIMISGAAIMALYKGITTLVDQENAAASAKGGEG
TASASAVASKKKRKPKMSLGESFKFLLTNRYLACMAILVVSYGLAINFTE
VMWKSQVKLLYQDKRKYQQFMGNYSTMMGATTFVVIFFGSQIVKTFGMKV
GALTTPIMLGLLAAPFFGYIIFGGISSKGVSSPKALQTAVWVGLVQNILS
KSIKYALFDPTKEMAYIPLGQEEKTKGKAAIDVLAARIGKSGGALLQQAI
VLFFGNIIDGAPVVVGLFYIVIFAWLFAANSLGNQFEEVSKNK*
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mRNA from alignment at scaffold_3:1144181..1145807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_472 ID=mRNA_472|Name=jgi.p|Nanoce1779_2|523422|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp|location=Sequence derived from alignment at scaffold_3:1144181..1145807- (Nannochloropsis oceanica)
ATGGTCAAGTCCCGCTTTGGCAAGATCCGTGCCACGGTATTTCCGATCGA
AAACAAGGAATGCCGCAAGTTTTTTATGATGAGCGGGATGATGTTTTTTA
TTATCTACGTTTACACGGTTGTCCGTGACACGAAGGACACGCTCATCGTC
TCGTCCTGCGGGGCCGAAGCCATTACATTCCTCAAGGTTTACGGGGTGTT
GCCTGCCTCGGCCTTGTTCATGGTTGCGTATGCCAAAGCATCGAATGCAC
TGAGTAAAAAGACATTATTCTATGCGACATCCGCTCCCTTCTTCATTTTT
TATGCGGTGTTCTGCACGCTGATCTACCCGAATCGTAACCTGTTGATGCC
GAACATTCCCGCGCAAGCAGGGGGGTTGGGGTTTATGATTTCTCTGGTCA
AGAATTGGGATTATTCCTTGTTCTATGTCGTGTCCGAGTTGTTCGGGAGT
GTGGGTGTCTCGGTGCTCTTCTGGCAGCTCGCGAACGAGATCATTAAGGT
GGACGAAGCTAAGCGTTTTTATCCTCTATTTGGTCAGCTGGCCAATATTG
CGCCTATTGCTGCAGGGCAGACGGTTGTGCTATCTTCGCACATGACTGAC
CCTATGAGTAAAGACCCTTTCCTGAAGAGCATTCAGTTAATTACTGTCTT
TATTATGATCTCGGGGGCGGCGATTATGGCCCTATACAAGGGGATTACCA
CGCTGGTGGACCAGGAGAACGCGGCAGCGAGTGCAAAAGGGGGTGAGGGG
ACCGCGTCAGCCTCGGCTGTGGCGAGCAAGAAGAAGAGAAAGCCCAAGAT
GAGCCTGGGGGAAAGCTTTAAGTTCCTGCTGACCAACCGGTATTTGGCGT
GTATGGCGATCCTGGTGGTGTCGTATGGCCTGGCCATCAATTTCACCGAG
GTGAGGAAGGAAGGAGGGAGGGAGGGGAGGAAAGGATGGACACGTTTGGT
TGTTGTTGTAATTTATAGAAAAGAAACATTCCTTCTCACACACTGACACA
CCCACCCCTCCCACCCACTTTCCCTCCTTCCCTCCCCTCCCGCAGGTCAT
GTGGAAGAGCCAAGTGAAGCTCCTCTACCAAGACAAGCGAAAGTACCAGC
AGTTCATGGGCAACTATTCCACGATGATGGGAGCCACCACCTTCGTCGTC
ATCTTCTTTGGGTCGCAAATCGTCAAGACTTTTGGAATGAAAGTTGGAGC
CTTGACCACTCCCATCATGCTTGGCTTGTTGGCTGCACCCTTTTTCGGGT
ACATTATATTTGGTGGAATTTCGAGCAAGGGAGTATCGTCACCCAAGGCC
CTGCAGACAGCGGTGTGGGTTGGATTGGTCCAGAATATCTTGTCGAAATC
GATTAAGTATGCTTTGTTTGATCCCACCAAGGAGATGGCTTACATCCCCT
TGGGGCAGGAGGAGAAGACCAAGGGCAAGGCCGCGATTGATGTGCTGGCG
GCGCGTATCGGGAAGAGTGGTGGGGCGCTGTTACAGCAGGCGATTGTCCT
CTTCTTTGGGAATATCATTGATGGGGCCCCAGTGGTGGTGGGCCTGTTTT
ATATCGTCATTTTTGCCTGGCTGTTCGCCGCCAATTCATTGGGCAACCAA
TTCGAAGAGGTGTCCAAAAATAAGTAA
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Coding sequence (CDS) from alignment at scaffold_3:1144181..1145807-

>mRNA_472 ID=mRNA_472|Name=jgi.p|Nanoce1779_2|523422|organism=Nannochloropsis oceanica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_3:1144181..1145807- (Nannochloropsis oceanica)
GTCATGTGGAAGAGCCAAGTGAAGCTCCTCTACCAAGACAAGCGAAAGTA
CCAGCAGTTCATGGGCAACTATTCCACGATGATGGGAGCCACCACCTTCG
TCGTCATCTTCTTTGGGTCGCAAATCGTCAAGACTTTTGGAATGAAAGTT
GGAGCCTTGACCACTCCCATCATGCTTGGCTTGTTGGCTGCACCCTTTTT
CGGGTACATTATATTTGGTGGAATTTCGAGCAAGGGAGTATCGTCACCCA
AGGCCCTGCAGACAGCGGTGTGGGTTGGATTGGTCCAGAATATCTTGTCG
AAATCGATTAAGTATGCTTTGTTTGATCCCACCAAGGAGATGGCTTACAT
CCCCTTGGGGCAGGAGGAGAAGACCAAGGGCAAGGCCGCGATTGATGTGC
TGGCGGCGCGTATCGGGAAGAGTGGTGGGGCGCTGTTACAGCAGGCGATT
GTCCTCTTCTTTGGGAATATCATTGATGGGGCCCCAGTGGTGGTGGGCCT
GTTTTATATCGTCATTTTTGCCTGGCTGTTCGCCGCCAATTCATTGGGCA
ACCAATTCGAAGAGGTGTCCAAAAATAAGTAAATGGTCAAGTCCCGCTTT
GGCAAGATCCGTGCCACGGTATTTCCGATCGAAAACAAGGAATGCCGCAA
GTTTTTTATGATGAGCGGGATGATGTTTTTTATTATCTACGTTTACACGG
TTGTCCGTGACACGAAGGACACGCTCATCGTCTCGTCCTGCGGGGCCGAA
GCCATTACATTCCTCAAGGTTTACGGGGTGTTGCCTGCCTCGGCCTTGTT
CATGGTTGCGTATGCCAAAGCATCGAATGCACTGAGTAAAAAGACATTAT
TCTATGCGACATCCGCTCCCTTCTTCATTTTTTATGCGGTGTTCTGCACG
CTGATCTACCCGAATCGTAACCTGTTGATGCCGAACATTCCCGCGCAAGC
AGGGGGGTTGGGGTTTATGATTTCTCTGGTCAAGAATTGGGATTATTCCT
TGTTCTATGTCGTGTCCGAGTTGTTCGGGAGTGTGGGTGTCTCGGTGCTC
TTCTGGCAGCTCGCGAACGAGATCATTAAGGTGGACGAAGCTAAGCGTTT
TTATCCTCTATTTGGTCAGCTGGCCAATATTGCGCCTATTGCTGCAGGGC
AGACGGTTGTGCTATCTTCGCACATGACTGACCCTATGAGTAAAGACCCT
TTCCTGAAGAGCATTCAGTTAATTACTGTCTTTATTATGATCTCGGGGGC
GGCGATTATGGCCCTATACAAGGGGATTACCACGCTGGTGGACCAGGAGA
ACGCGGCAGCGAGTGCAAAAGGGGGTGAGGGGACCGCGTCAGCCTCGGCT
GTGGCGAGCAAGAAGAAGAGAAAGCCCAAGATGAGCCTGGGGGAAAGCTT
TAAGTTCCTGCTGACCAACCGGTATTTGGCGTGTATGGCGATCCTGGTGG
TGTCGTATGGCCTGGCCATCAATTTCACCGAGGTCATGTGGAAGAGCCAA
GTGAAGCTCCTCTACCAAGACAAGCGAAAGTACCAGCAGTTCATGGGCAA
CTATTCCACGATGATGGGAGCCACCACCTTCGTCGTCATCTTCTTTGGGT
CGCAAATCGTCAAGACTTTTGGAATGAAAGTTGGAGCCTTGACCACTCCC
ATCATGCTTGGCTTGTTGGCTGCACCCTTTTTCGGGTACATTATATTTGG
TGGAATTTCGAGCAAGGGAGTATCGTCACCCAAGGCCCTGCAGACAGCGG
TGTGGGTTGGATTGGTCCAGAATATCTTGTCGAAATCGATTAAGTATGCT
TTGTTTGATCCCACCAAGGAGATGGCTTACATCCCCTTGGGGCAGGAGGA
GAAGACCAAGGGCAAGGCCGCGATTGATGTGCTGGCGGCGCGTATCGGGA
AGAGTGGTGGGGCGCTGTTACAGCAGGCGATTGTCCTCTTCTTTGGGAAT
ATCATTGATGGGGCCCCAGTGGTGGTGGGCCTGTTTTATATCGTCATTTT
TGCCTGGCTGTTCGCCGCCAATTCATTGGGCAACCAATTCGAAGAGGTGT
CCAAAAATAAGTAAATGGTCAAGTCCCGCTTTGGCAAGATCCGTGCCACG
GTATTTCCGATCGAAAACAAGGAATGCCGCAAGTTTTTTATGATGAGCGG
GATGATGTTTTTTATTATCTACGTTTACACGGTTGTCCGTGACACGAAGG
ACACGCTCATCGTCTCGTCCTGCGGGGCCGAAGCCATTACATTCCTCAAG
GTTTACGGGGTGTTGCCTGCCTCGGCCTTGTTCATGGTTGCGTATGCCAA
AGCATCGAATGCACTGAGTAAAAAGACATTATTCTATGCGACATCCGCTC
CCTTCTTCATTTTTTATGCGGTGTTCTGCACGCTGATCTACCCGAATCGT
AACCTGTTGATGCCGAACATTCCCGCGCAAGCAGGGGGGTTGGGGTTTAT
GATTTCTCTGGTCAAGAATTGGGATTATTCCTTGTTCTATGTCGTGTCCG
AGTTGTTCGGGAGTGTGGGTGTCTCGGTGCTCTTCTGGCAGCTCGCGAAC
GAGATCATTAAGGTGGACGAAGCTAAGCGTTTTTATCCTCTATTTGGTCA
GCTGGCCAATATTGCGCCTATTGCTGCAGGGCAGACGGTTGTGCTATCTT
CGCACATGACTGACCCTATGAGTAAAGACCCTTTCCTGAAGAGCATTCAG
TTAATTACTGTCTTTATTATGATCTCGGGGGCGGCGATTATGGCCCTATA
CAAGGGGATTACCACGCTGGTGGACCAGGAGAACGCGGCAGCGAGTGCAA
AAGGGGGTGAGGGGACCGCGTCAGCCTCGGCTGTGGCGAGCAAGAAGAAG
AGAAAGCCCAAGATGAGCCTGGGGGAAAGCTTTAAGTTCCTGCTGACCAA
CCGGTATTTGGCGTGTATGGCGATCCTGGTGGTGTCGTATGGCCTGGCCA
TCAATTTCACCGAG
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Synonyms
Publications