jgi.p|Nanoce1779_2|587647, mRNA_4719 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587647
Unique Name	mRNA_4719
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2874
Alignment location	scaffold_9:472302..475175 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587733
Track	FilteredModels2
ProteinId	587647

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:472302..475175 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587647	gene_4719	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587647	mRNA_4719-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4719	CDS_4719	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:472302..475175+
coding sequence from alignment at scaffold_9:472302..475175+

mRNA sequence

>mRNA_4719 ID=mRNA_4719|Name=jgi.p|Nanoce1779_2|587647|organism=Nannochloropsis oceanica|type=mRNA|length=2874bp
CAACAGGTGCTCCTCTGGTGCATAAGGCCTCCCCTCCTCTTCGCCTCCTC
AACACTATTATCATGTACAGTCTGCGCCGCCAACAGCTCTCTTCTCTCCT
CTGGCGCACGGGTCTGGGAGGCGTTACTTGCTACACCATGCAACGTGGCA
TCAGGTCGGGCACGACCACGTACTGCGAGTCGCCGGCTGGCCCAGCCACC
GGACCAGGCAAACGTGGATACACGAAGAGTACTGCCTCCAAGTTCCCCAA
AGACACACCGCCGGACAAACTCTCCCTTGACAAGGCATTGGTCGACATAA
AAGAAGCCAACAAGGCCTTAGGCGGCAGCCTAAAAGGAGACGAAGTCCTG
GCTATCATGGCATTACTCGCTCGGGAAGTCGTCCAACAGCAGACAAAAAA
AGGCACCCACTCCCCGGCCCGCCACCCCTCATCCACGCTTGTCTCTCCTC
CGCTATCCGCCTTAAAAAGTCGCCTGTATGTCAAACGCTTTTTAGAGTAT
GCAACTTTGTGCCTTAATGTCTATGATCTTCCTTCGGATAAAGATTGGCT
CTTTCCTCCTCCAGAGCTCGGCCCTGTCAACCGGTGGGAGCTCCTCTCTT
CGCACACAGGCGGTGTCTGCATCCCTCGCCACGTCGTCCTAAGGGCAGAT
GGAGGAGTGGGTACGACAAGAAGGAGGAGGACGAAACGACTTATGGTTGT
AGTGAGGGGGACGGCAGAAGTGACGGACGCGGCGATAAATATTGCCATGG
CTCCTGGCATGTGGCGATACAATGGGGGGGAGCATTATTGTCATCAGGGA
ATCGTTGAATCTACAACTTTTCTGGTACGAATGGTCAGGCCGGTTATATG
GCGGGCGATCGACAAAATGAAGAGGGAGGAGGGGATAGATCCAGGAAATC
AGGTTGAGGTAGTGTTTATGGGCCATAGTCTTGGAGGAGCGATTGCTGCA
GTTGCGGCGTTGGAGCTGCAAGGGGAGTTTGGGGTGCGAGTGCCGGTTAA
AAGTGTGGGGTTTAGCACTCCTGCAACTTTGTCGGAAGAGGTGGCATCGG
CACCATTGACCCGGAAAATAATCACGACTGTTGTGCTCGGGGATGACATG
ATTCCGAGATGCTCGACGAGGAATTTGCAGGAGTTAAAGAGGAGAGCGAG
AAGAGTGTTGGTGGATGAGGAAGTGGGCATCATTCGTGAAATAGTGGCGG
GGGAGGTCACGAGGAGGGGGGATGAATGGAGTCGGCAGATACATGGGGAG
GTGACGAGGAGAGGGGAGAAATGGACCAAGCAGTTGACGGCCATGCTCTC
AAGCAAGGCGAACGAGGCCAAGCGACAGCTTCCTGAAGGGTGGGAAAACT
TATGGCCTCTTTTATCGGTGATGGAGGGGGGGGAAGTATTGGATGTAAGA
GGGCTAAAGCAAGCGTTTAGTGGCGTCTTGGCGCATTGCCTCCCACCGTT
GATAGATCAGCAGCAGCAAAAACAGCAACAGTGGAAGACGGATGCAGCGG
GAGTTGCAGCGGTAAGAGATAAGGAGGGAGTGGCGGAGTCACTGGTTATG
GCAGCTGAGACGACGAAGATGGCGGAGGAGACAACTGCAATGTTGGAGCA
GGCGATAGCTGATTACCAGGCAACACTCGATGCAGAGATTGTGTACGTCA
AAGATTATATTGAACGCATCAAATTCGACGCCCTTGATTCCTACCTACCC
TCCTCTCTTGATCCTACTCTGTCTCCTTCATCGATCTTAAAAGCAAAGCA
GAGACGCACTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTA
GCAGCAGCAGCAGCGTTTCAAACGTCGAAAACGACGCATTCGACCAGGAG
TACGACGCTGAAGAAGAGGCAAACGAGCAGGCCCTTTTTGATGCCAATAT
CACCCGGGCCGCCGAAAGGAATGAAAAACCCATGGATATCACTGCGGTGC
AAGCCATGCTCCAAGCATTAATTGCCGAGAAAGCCCACATGGCAGCCTCC
GCAGTCAAGAGCCAAGTGGAAGCCCGCGTGAGAGAGTTGTTGAGTTCTTC
TTCCAATAAGGTCGACAAAGTGAAGAACAGGGCGTCGAAATGGATGACGG
ACTCCTTCAAAGGCTTGCAGGAGCAGGCAAAAGCAGCCTTACCCGTCGTG
GGGGAAAGGAAGAAGGGAGGGAAGGAGGTTGAAGAGAAAAAGAGGGTGTC
AGTTTCGGCGGTGGAAGAAATGGACGGAAACATGACGGACTCTGCAACAA
AAGCAGCAGCTGCCACAGAAGGGGATTCGGACGCAGTAGCTTTGTACCCA
CCCGGAGAAATTTTTTATATTCACCCTTTGCCACTCCCCGATTCCTCCAG
CAACAGCAGTGGTAGTGGCAGCAGCAGCAACGGCAGTCGCGACGGGCGTC
GAAGAGGGAAAGCAAAGTATAATTATGAATTAAGACGGGTGAGGGATGTG
ACGTTCTTTGATGGGATTGTTCTCTCTCCTCATATGTTTACTGATCATTT
GTTGACCAACGCGATCAAGAGCTTGAAAGAGGTGGGTAAGGAGGGAGACG
GTTAAGGTAACACGGCGTGCTGCAGCACGGGAGCGATATGCGACACGATA
TAGAAAGCAGAGAACATGTGCTTATCTCCATTTATGCAAAAATGATCATC
AATAGGTAAGGACCATGAAGTCTTTGAAAGAGGAGGATGTAAGCAAGACA
GCGAGCAAGTATGTACCGACACGAAAGGAATAAATATGAGGTACAGCACA
GCTAGGATATTCCACATAAATTAGAAAGGAAGAGTCATTAAAAACGGAGA
GAAGAAAAGATTAGTAGGCCTGTGTAAAATGCTCTTGGCTTCGAGGCTCT
TCCTTAAATTACAGTGTCACGCGC

protein sequence of jgi.p|Nanoce1779_2|587647

>mRNA_4719-protein ID=mRNA_4719-protein|Name=jgi.p|Nanoce1779_2|587647|organism=Nannochloropsis oceanica|type=polypeptide|length=831bp
MYSLRRQQLSSLLWRTGLGGVTCYTMQRGIRSGTTTYCESPAGPATGPGK
RGYTKSTASKFPKDTPPDKLSLDKALVDIKEANKALGGSLKGDEVLAIMA
LLAREVVQQQTKKGTHSPARHPSSTLVSPPLSALKSRLYVKRFLEYATLC
LNVYDLPSDKDWLFPPPELGPVNRWELLSSHTGGVCIPRHVVLRADGGVG
TTRRRRTKRLMVVVRGTAEVTDAAINIAMAPGMWRYNGGEHYCHQGIVES
TTFLVRMVRPVIWRAIDKMKREEGIDPGNQVEVVFMGHSLGGAIAAVAAL
ELQGEFGVRVPVKSVGFSTPATLSEEVASAPLTRKIITTVVLGDDMIPRC
STRNLQELKRRARRVLVDEEVGIIREIVAGEVTRRGDEWSRQIHGEVTRR
GEKWTKQLTAMLSSKANEAKRQLPEGWENLWPLLSVMEGGEVLDVRGLKQ
AFSGVLAHCLPPLIDQQQQKQQQWKTDAAGVAAVRDKEGVAESLVMAAET
TKMAEETTAMLEQAIADYQATLDAEIVYVKDYIERIKFDALDSYLPSSLD
PTLSPSSILKAKQRRTGSSSSSSSSSSSSSSSSSVSNVENDAFDQEYDAE
EEANEQALFDANITRAAERNEKPMDITAVQAMLQALIAEKAHMAASAVKS
QVEARVRELLSSSSNKVDKVKNRASKWMTDSFKGLQEQAKAALPVVGERK
KGGKEVEEKKRVSVSAVEEMDGNMTDSATKAAAATEGDSDAVALYPPGEI
FYIHPLPLPDSSSNSSGSGSSSNGSRDGRRRGKAKYNYELRRVRDVTFFD
GIVLSPHMFTDHLLTNAIKSLKEVGKEGDG*

mRNA from alignment at scaffold_9:472302..475175+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4719 ID=mRNA_4719|Name=jgi.p|Nanoce1779_2|587647|organism=Nannochloropsis oceanica|type=mRNA|length=2874bp|location=Sequence derived from alignment at scaffold_9:472302..475175+ (Nannochloropsis oceanica)
CAACAGGTGCTCCTCTGGTGCATAAGGCCTCCCCTCCTCTTCGCCTCCTC
AACACTATTATCATGTACAGTCTGCGCCGCCAACAGCTCTCTTCTCTCCT
CTGGCGCACGGGTCTGGGAGGCGTTACTTGCTACACCATGCAACGTGGCA
TCAGGTCGGGCACGACCACGTACTGCGAGTCGCCGGCTGGCCCAGCCACC
GGACCAGGCAAACGTGGATACACGAAGAGTACTGCCTCCAAGTTCCCCAA
AGACACACCGCCGGACAAACTCTCCCTTGACAAGGCATTGGTCGACATAA
AAGAAGCCAACAAGGCCTTAGGCGGCAGCCTAAAAGGAGACGAAGTCCTG
GCTATCATGGCATTACTCGCTCGGGAAGTCGTCCAACAGCAGACAAAAAA
AGGCACCCACTCCCCGGCCCGCCACCCCTCATCCACGCTTGTCTCTCCTC
CGCTATCCGCCTTAAAAAGTCGCCTGTATGTCAAACGCTTTTTAGAGTAT
GCAACTTTGTGCCTTAATGTCTATGATCTTCCTTCGGATAAAGATTGGCT
CTTTCCTCCTCCAGAGCTCGGCCCTGTCAACCGGTGGGAGCTCCTCTCTT
CGCACACAGGCGGTGTCTGCATCCCTCGCCACGTCGTCCTAAGGGCAGAT
GGAGGAGTGGGTACGACAAGAAGGAGGAGGACGAAACGACTTATGGTTGT
AGTGAGGGGGACGGCAGAAGTGACGGACGCGGCGATAAATATTGCCATGG
CTCCTGGCATGTGGCGATACAATGGGGGGGAGCATTATTGTCATCAGGGA
ATCGTTGAATCTACAACTTTTCTGGTACGAATGGTCAGGCCGGTTATATG
GCGGGCGATCGACAAAATGAAGAGGGAGGAGGGGATAGATCCAGGAAATC
AGGTTGAGGTAGTGTTTATGGGCCATAGTCTTGGAGGAGCGATTGCTGCA
GTTGCGGCGTTGGAGCTGCAAGGGGAGTTTGGGGTGCGAGTGCCGGTTAA
AAGTGTGGGGTTTAGCACTCCTGCAACTTTGTCGGAAGAGGTGGCATCGG
CACCATTGACCCGGAAAATAATCACGACTGTTGTGCTCGGGGATGACATG
ATTCCGAGATGCTCGACGAGGAATTTGCAGGAGTTAAAGAGGAGAGCGAG
AAGAGTGTTGGTGGATGAGGAAGTGGGCATCATTCGTGAAATAGTGGCGG
GGGAGGTCACGAGGAGGGGGGATGAATGGAGTCGGCAGATACATGGGGAG
GTGACGAGGAGAGGGGAGAAATGGACCAAGCAGTTGACGGCCATGCTCTC
AAGCAAGGCGAACGAGGCCAAGCGACAGCTTCCTGAAGGGTGGGAAAACT
TATGGCCTCTTTTATCGGTGATGGAGGGGGGGGAAGTATTGGATGTAAGA
GGGCTAAAGCAAGCGTTTAGTGGCGTCTTGGCGCATTGCCTCCCACCGTT
GATAGATCAGCAGCAGCAAAAACAGCAACAGTGGAAGACGGATGCAGCGG
GAGTTGCAGCGGTAAGAGATAAGGAGGGAGTGGCGGAGTCACTGGTTATG
GCAGCTGAGACGACGAAGATGGCGGAGGAGACAACTGCAATGTTGGAGCA
GGCGATAGCTGATTACCAGGCAACACTCGATGCAGAGATTGTGTACGTCA
AAGATTATATTGAACGCATCAAATTCGACGCCCTTGATTCCTACCTACCC
TCCTCTCTTGATCCTACTCTGTCTCCTTCATCGATCTTAAAAGCAAAGCA
GAGACGCACTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTA
GCAGCAGCAGCAGCGTTTCAAACGTCGAAAACGACGCATTCGACCAGGAG
TACGACGCTGAAGAAGAGGCAAACGAGCAGGCCCTTTTTGATGCCAATAT
CACCCGGGCCGCCGAAAGGAATGAAAAACCCATGGATATCACTGCGGTGC
AAGCCATGCTCCAAGCATTAATTGCCGAGAAAGCCCACATGGCAGCCTCC
GCAGTCAAGAGCCAAGTGGAAGCCCGCGTGAGAGAGTTGTTGAGTTCTTC
TTCCAATAAGGTCGACAAAGTGAAGAACAGGGCGTCGAAATGGATGACGG
ACTCCTTCAAAGGCTTGCAGGAGCAGGCAAAAGCAGCCTTACCCGTCGTG
GGGGAAAGGAAGAAGGGAGGGAAGGAGGTTGAAGAGAAAAAGAGGGTGTC
AGTTTCGGCGGTGGAAGAAATGGACGGAAACATGACGGACTCTGCAACAA
AAGCAGCAGCTGCCACAGAAGGGGATTCGGACGCAGTAGCTTTGTACCCA
CCCGGAGAAATTTTTTATATTCACCCTTTGCCACTCCCCGATTCCTCCAG
CAACAGCAGTGGTAGTGGCAGCAGCAGCAACGGCAGTCGCGACGGGCGTC
GAAGAGGGAAAGCAAAGTATAATTATGAATTAAGACGGGTGAGGGATGTG
ACGTTCTTTGATGGGATTGTTCTCTCTCCTCATATGTTTACTGATCATTT
GTTGACCAACGCGATCAAGAGCTTGAAAGAGGTGGGTAAGGAGGGAGACG
GTTAAGGTAACACGGCGTGCTGCAGCACGGGAGCGATATGCGACACGATA
TAGAAAGCAGAGAACATGTGCTTATCTCCATTTATGCAAAAATGATCATC
AATAGGTAAGGACCATGAAGTCTTTGAAAGAGGAGGATGTAAGCAAGACA
GCGAGCAAGTATGTACCGACACGAAAGGAATAAATATGAGGTACAGCACA
GCTAGGATATTCCACATAAATTAGAAAGGAAGAGTCATTAAAAACGGAGA
GAAGAAAAGATTAGTAGGCCTGTGTAAAATGCTCTTGGCTTCGAGGCTCT
TCCTTAAATTACAGTGTCACGCGC

Coding sequence (CDS) from alignment at scaffold_9:472302..475175+

>mRNA_4719 ID=mRNA_4719|Name=jgi.p|Nanoce1779_2|587647|organism=Nannochloropsis oceanica|type=CDS|length=2493bp|location=Sequence derived from alignment at scaffold_9:472302..475175+ (Nannochloropsis oceanica)
ATGTACAGTCTGCGCCGCCAACAGCTCTCTTCTCTCCTCTGGCGCACGGG
TCTGGGAGGCGTTACTTGCTACACCATGCAACGTGGCATCAGGTCGGGCA
CGACCACGTACTGCGAGTCGCCGGCTGGCCCAGCCACCGGACCAGGCAAA
CGTGGATACACGAAGAGTACTGCCTCCAAGTTCCCCAAAGACACACCGCC
GGACAAACTCTCCCTTGACAAGGCATTGGTCGACATAAAAGAAGCCAACA
AGGCCTTAGGCGGCAGCCTAAAAGGAGACGAAGTCCTGGCTATCATGGCA
TTACTCGCTCGGGAAGTCGTCCAACAGCAGACAAAAAAAGGCACCCACTC
CCCGGCCCGCCACCCCTCATCCACGCTTGTCTCTCCTCCGCTATCCGCCT
TAAAAAGTCGCCTGTATGTCAAACGCTTTTTAGAGTATGCAACTTTGTGC
CTTAATGTCTATGATCTTCCTTCGGATAAAGATTGGCTCTTTCCTCCTCC
AGAGCTCGGCCCTGTCAACCGGTGGGAGCTCCTCTCTTCGCACACAGGCG
GTGTCTGCATCCCTCGCCACGTCGTCCTAAGGGCAGATGGAGGAGTGGGT
ACGACAAGAAGGAGGAGGACGAAACGACTTATGGTTGTAGTGAGGGGGAC
GGCAGAAGTGACGGACGCGGCGATAAATATTGCCATGGCTCCTGGCATGT
GGCGATACAATGGGGGGGAGCATTATTGTCATCAGGGAATCGTTGAATCT
ACAACTTTTCTGGTACGAATGGTCAGGCCGGTTATATGGCGGGCGATCGA
CAAAATGAAGAGGGAGGAGGGGATAGATCCAGGAAATCAGGTTGAGGTAG
TGTTTATGGGCCATAGTCTTGGAGGAGCGATTGCTGCAGTTGCGGCGTTG
GAGCTGCAAGGGGAGTTTGGGGTGCGAGTGCCGGTTAAAAGTGTGGGGTT
TAGCACTCCTGCAACTTTGTCGGAAGAGGTGGCATCGGCACCATTGACCC
GGAAAATAATCACGACTGTTGTGCTCGGGGATGACATGATTCCGAGATGC
TCGACGAGGAATTTGCAGGAGTTAAAGAGGAGAGCGAGAAGAGTGTTGGT
GGATGAGGAAGTGGGCATCATTCGTGAAATAGTGGCGGGGGAGGTCACGA
GGAGGGGGGATGAATGGAGTCGGCAGATACATGGGGAGGTGACGAGGAGA
GGGGAGAAATGGACCAAGCAGTTGACGGCCATGCTCTCAAGCAAGGCGAA
CGAGGCCAAGCGACAGCTTCCTGAAGGGTGGGAAAACTTATGGCCTCTTT
TATCGGTGATGGAGGGGGGGGAAGTATTGGATGTAAGAGGGCTAAAGCAA
GCGTTTAGTGGCGTCTTGGCGCATTGCCTCCCACCGTTGATAGATCAGCA
GCAGCAAAAACAGCAACAGTGGAAGACGGATGCAGCGGGAGTTGCAGCGG
TAAGAGATAAGGAGGGAGTGGCGGAGTCACTGGTTATGGCAGCTGAGACG
ACGAAGATGGCGGAGGAGACAACTGCAATGTTGGAGCAGGCGATAGCTGA
TTACCAGGCAACACTCGATGCAGAGATTGTGTACGTCAAAGATTATATTG
AACGCATCAAATTCGACGCCCTTGATTCCTACCTACCCTCCTCTCTTGAT
CCTACTCTGTCTCCTTCATCGATCTTAAAAGCAAAGCAGAGACGCACTGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGCAGCAGCAGCA
GCGTTTCAAACGTCGAAAACGACGCATTCGACCAGGAGTACGACGCTGAA
GAAGAGGCAAACGAGCAGGCCCTTTTTGATGCCAATATCACCCGGGCCGC
CGAAAGGAATGAAAAACCCATGGATATCACTGCGGTGCAAGCCATGCTCC
AAGCATTAATTGCCGAGAAAGCCCACATGGCAGCCTCCGCAGTCAAGAGC
CAAGTGGAAGCCCGCGTGAGAGAGTTGTTGAGTTCTTCTTCCAATAAGGT
CGACAAAGTGAAGAACAGGGCGTCGAAATGGATGACGGACTCCTTCAAAG
GCTTGCAGGAGCAGGCAAAAGCAGCCTTACCCGTCGTGGGGGAAAGGAAG
AAGGGAGGGAAGGAGGTTGAAGAGAAAAAGAGGGTGTCAGTTTCGGCGGT
GGAAGAAATGGACGGAAACATGACGGACTCTGCAACAAAAGCAGCAGCTG
CCACAGAAGGGGATTCGGACGCAGTAGCTTTGTACCCACCCGGAGAAATT
TTTTATATTCACCCTTTGCCACTCCCCGATTCCTCCAGCAACAGCAGTGG
TAGTGGCAGCAGCAGCAACGGCAGTCGCGACGGGCGTCGAAGAGGGAAAG
CAAAGTATAATTATGAATTAAGACGGGTGAGGGATGTGACGTTCTTTGAT
GGGATTGTTCTCTCTCCTCATATGTTTACTGATCATTTGTTGACCAACGC
GATCAAGAGCTTGAAAGAGGTGGGTAAGGAGGGAGACGGTTAA

Synonyms

Publications