jgi.p|Nanoce1779_2|587643, mRNA_4718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587643
Unique NamemRNA_4718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1233
Alignment locationscaffold_9:470576..471983 -

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Properties
Property NameValue
TranscriptId587729
TrackFilteredModels2
ProteinId587643
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:470576..471983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587643gene_4718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587643mRNA_4718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4718CDS_4718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4718 ID=mRNA_4718|Name=jgi.p|Nanoce1779_2|587643|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
ACAGGAATGAGCTCATCCTGTCGTCTTCTTCCCCGCCTCGATTCATCTCT
TCTTCTCCTTCTAGTATTCCTCTCGCAGGCACACGCCTTAATTTTCAAGC
CCACCCACACAATAGCCATGCAGCTCTCCATGACTTCCCGTGACCCGCAC
GCCAACATGCCAATTTTTGGCCTGGGCACATGGCGTTCGGACAAGGGCAG
GGTCAAAGACGCAGTGATGGAATCCTTGCGCGTTGGCTATGTCCACCTCG
ACGCAGCGCAAGTGTACGAGAATCAAGAAGAGGTAGGAGAGGGCTTGCAT
GAGGCCAAGAGCAAAGGTTATGTGAAAGAATTGAGCGATGTGTGGATTAC
GAGCAAGTTGTGGAATACGGACCATCGTCCTGAGCATGTGCGCCCCGCAT
GTGATCGAATTCTGCGCGAGTTGAAGGTACCTAAGATTCAGCAGCTTTTG
ATCCATTGGCCGACGGCCTTGAAGAAGCTGGATGGCGCACCGTTGTGGCC
GAAGGATGCAAAGGGGAATCACGCGTATGATTCCGAGGCGGATAACAAGG
CCACATGGCGGGAGATGGAGAAGCTGGTCGATGAAGGGTTGGTTGAGACG
ATTGGCTTGTCGAATTTTAATGAAGAAGAGGTTCAGGGAATTCTCGATAT
TGCGAGGATCAAGCCTGTGTGCAACCAGATTGAATGCCACCCTTACTTGC
CACAAGACGAGATGCGCACCTTTCTCCATTCCAAGGGGATGGCTCTTGTG
GCCTACTCCCCTCTATCGAATCTTGACCCAAACGATGCCAGCAAGCCCTG
CGCCCTACGTGATAACACCATTTTAGGCCTTGCGAAAAAATACACCAAAT
CGCCCGCTCAGATCATCTTGCGTTGGCATGTCCAGATGAAGAATGTGGTT
ATTCCGAAGACTGTGACGTTGTCCCGAATCAGTGAGAACAAGGAAATTTT
TGATTTCGAACTGTCGGAGGAGGACATGGCGGCGATTGGTGAGATGGGAA
AGAAGCATCATCATCGGCTGGTGAACCCTGGCTTCCGTGCGGGGGGAGCA
CCCGTGTTCAAGCAGTAACACAAAAAAAAGGGAAGTTAGGGAGGCAGGGG
GGGAGAAGGAAGATGCAGGGGCACTTGCCGTACAGACACACGGAAAAAAA
GGAAATGAAAAAGGACGTGAAACGTAAGTAACTACAGGGCGGTTAAGAGA
GTAGAAAAAAGAAATAATTCCCCAAAACTGAAA
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protein sequence of jgi.p|Nanoce1779_2|587643

>mRNA_4718-protein ID=mRNA_4718-protein|Name=jgi.p|Nanoce1779_2|587643|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSSSCRLLPRLDSSLLLLLVFLSQAHALIFKPTHTIAMQLSMTSRDPHAN
MPIFGLGTWRSDKGRVKDAVMESLRVGYVHLDAAQVYENQEEVGEGLHEA
KSKGYVKELSDVWITSKLWNTDHRPEHVRPACDRILRELKVPKIQQLLIH
WPTALKKLDGAPLWPKDAKGNHAYDSEADNKATWREMEKLVDEGLVETIG
LSNFNEEEVQGILDIARIKPVCNQIECHPYLPQDEMRTFLHSKGMALVAY
SPLSNLDPNDASKPCALRDNTILGLAKKYTKSPAQIILRWHVQMKNVVIP
KTVTLSRISENKEIFDFELSEEDMAAIGEMGKKHHHRLVNPGFRAGGAPV
FKQ*
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mRNA from alignment at scaffold_9:470576..471983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4718 ID=mRNA_4718|Name=jgi.p|Nanoce1779_2|587643|organism=Nannochloropsis oceanica|type=mRNA|length=1408bp|location=Sequence derived from alignment at scaffold_9:470576..471983- (Nannochloropsis oceanica)
ACAGGAATGAGCTCATCCTGTCGTCTTCTTCCCCGCCTCGATTCATCTCT
TCTTCTCCTTCTAGTATTCCTCTCGCAGGCACACGCCTTAATTTTCAAGC
CCACCCACACAATAGCCATGCAGCTCTCCATGACTTCCCGTGACCCGCAC
GCCAACATGCCAAGTATGTAACGCTTTGAGGGAAGGGCAGAAGAGTGACA
CCGCTCTGTCTGCAGTATTCAGCCACCCAACCTCTGACTCATTATAGTCC
ATATCTGAGCACTTACGTTTTATTTGCCTGCCGCATATGACACCTCGTTG
CTACACGTCCTATCTCTCTCGCTCGCTCTTCGACACAGTTTTTGGCCTGG
GCACATGGCGTTCGGACAAGGGCAGGGTCAAAGACGCAGTGATGGAATCC
TTGCGCGTTGGCTATGTCCACCTCGACGCAGCGCAAGTGTACGAGAATCA
AGAAGAGGTAGGAGAGGGCTTGCATGAGGCCAAGAGCAAAGGTTATGTGA
AAGAATTGAGCGATGTGTGGATTACGAGCAAGTTGTGGAATACGGACCAT
CGTCCTGAGCATGTGCGCCCCGCATGTGATCGAATTCTGCGCGAGTTGAA
GGTACCTAAGATTCAGCAGCTTTTGATCCATTGGCCGACGGCCTTGAAGA
AGCTGGATGGCGCACCGTTGTGGCCGAAGGATGCAAAGGGGAATCACGCG
TATGATTCCGAGGCGGATAACAAGGCCACATGGCGGGAGATGGAGAAGCT
GGTCGATGAAGGGTTGGTTGAGACGATTGGCTTGTCGAATTTTAATGAAG
AAGAGGTTCAGGGAATTCTCGATATTGCGAGGATCAAGCCTGTGTGCAAC
CAGATTGAATGCCACCCTTACTTGCCACAAGACGAGATGCGCACCTTTCT
CCATTCCAAGGGGATGGCTCTTGTGGCCTACTCCCCTCTATCGAATCTTG
ACCCAAACGATGCCAGCAAGCCCTGCGCCCTACGTGATAACACCATTTTA
GGCCTTGCGAAAAAATACACCAAATCGCCCGCTCAGATCATCTTGCGTTG
GCATGTCCAGATGAAGAATGTGGTTATTCCGAAGACTGTGACGTTGTCCC
GAATCAGTGAGAACAAGGAAATTTTTGATTTCGAACTGTCGGAGGAGGAC
ATGGCGGCGATTGGTGAGATGGGAAAGAAGCATCATCATCGGCTGGTGAA
CCCTGGCTTCCGTGCGGGGGGAGCACCCGTGTTCAAGCAGTAACACAAAA
AAAAGGGAAGTTAGGGAGGCAGGGGGGGAGAAGGAAGATGCAGGGGCACT
TGCCGTACAGACACACGGAAAAAAAGGAAATGAAAAAGGACGTGAAACGT
AAGTAACTACAGGGCGGTTAAGAGAGTAGAAAAAAGAAATAATTCCCCAA
AACTGAAA
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Coding sequence (CDS) from alignment at scaffold_9:470576..471983-

>mRNA_4718 ID=mRNA_4718|Name=jgi.p|Nanoce1779_2|587643|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_9:470576..471983- (Nannochloropsis oceanica)
TTTTTGGCCTGGGCACATGGCGTTCGGACAAGGGCAGGGTCAAAGACGCA
GTGATGGAATCCTTGCGCGTTGGCTATGTCCACCTCGACGCAGCGCAAGT
GTACGAGAATCAAGAAGAGGTAGGAGAGGGCTTGCATGAGGCCAAGAGCA
AAGGTTATGTGAAAGAATTGAGCGATGTGTGGATTACGAGCAAGTTGTGG
AATACGGACCATCGTCCTGAGCATGTGCGCCCCGCATGTGATCGAATTCT
GCGCGAGTTGAAGGTACCTAAGATTCAGCAGCTTTTGATCCATTGGCCGA
CGGCCTTGAAGAAGCTGGATGGCGCACCGTTGTGGCCGAAGGATGCAAAG
GGGAATCACGCGTATGATTCCGAGGCGGATAACAAGGCCACATGGCGGGA
GATGGAGAAGCTGGTCGATGAAGGGTTGGTTGAGACGATTGGCTTGTCGA
ATTTTAATGAAGAAGAGGTTCAGGGAATTCTCGATATTGCGAGGATCAAG
CCTGTGTGCAACCAGATTGAATGCCACCCTTACTTGCCACAAGACGAGAT
GCGCACCTTTCTCCATTCCAAGGGGATGGCTCTTGTGGCCTACTCCCCTC
TATCGAATCTTGACCCAAACGATGCCAGCAAGCCCTGCGCCCTACGTGAT
AACACCATTTTAGGCCTTGCGAAAAAATACACCAAATCGCCCGCTCAGAT
CATCTTGCGTTGGCATGTCCAGATGAAGAATGTGGTTATTCCGAAGACTG
TGACGTTGTCCCGAATCAGTGAGAACAAGGAAATTTTTGATTTCGAACTG
TCGGAGGAGGACATGGCGGCGATTGGTGAGATGGGAAAGAAGCATCATCA
TCGGCTGGTGAACCCTGGCTTCCGTGCGGGGGGAGCACCCGTGTTCAAGC
AGTAAATGAGCTCATCCTGTCGTCTTCTTCCCCGCCTCGATTCATCTCTT
CTTCTCCTTCTAGTATTCCTCTCGCAGGCACACGCCTTAATTTTCAAGCC
CACCCACACAATAGCCATGCAGCTCTCCATGACTTCCCGTGACCCGCACG
CCAACATGCCAATTTTTGGCCTGGGCACATGGCGTTCGGACAAGGGCAGG
GTCAAAGACGCAGTGATGGAATCCTTGCGCGTTGGCTATGTCCACCTCGA
CGCAGCGCAAGTGTACGAGAATCAAGAAGAGGTAGGAGAGGGCTTGCATG
AGGCCAAGAGCAAAGGTTATGTGAAAGAATTGAGCGATGTGTGGATTACG
AGCAAGTTGTGGAATACGGACCATCGTCCTGAGCATGTGCGCCCCGCATG
TGATCGAATTCTGCGCGAGTTGAAGGTACCTAAGATTCAGCAGCTTTTGA
TCCATTGGCCGACGGCCTTGAAGAAGCTGGATGGCGCACCGTTGTGGCCG
AAGGATGCAAAGGGGAATCACGCGTATGATTCCGAGGCGGATAACAAGGC
CACATGGCGGGAGATGGAGAAGCTGGTCGATGAAGGGTTGGTTGAGACGA
TTGGCTTGTCGAATTTTAATGAAGAAGAGGTTCAGGGAATTCTCGATATT
GCGAGGATCAAGCCTGTGTGCAACCAGATTGAATGCCACCCTTACTTGCC
ACAAGACGAGATGCGCACCTTTCTCCATTCCAAGGGGATGGCTCTTGTGG
CCTACTCCCCTCTATCGAATCTTGACCCAAACGATGCCAGCAAGCCCTGC
GCCCTACGTGATAACACCATTTTAGGCCTTGCGAAAAAATACACCAAATC
GCCCGCTCAGATCATCTTGCGTTGGCATGTCCAGATGAAGAATGTGGTTA
TTCCGAAGACTGTGACGTTGTCCCGAATCAGTGAGAACAAGGAAATTTTT
GATTTCGAACTGTCGGAGGAGGACATGGCGGCGATTGGTGAGATGGGAAA
GAAGCATCATCATCGGCTGGTGAACCCTGGCTTCCGTGCGGGGGGAGCAC
CCGTGTTCAAGCAGTAAATGAGCTCATCCTGTCGTCTTCTTCCCCGCCTC
GATTCATCTCTTCTTCTCCTTCTAGTATTCCTCTCGCAGGCACACGCCTT
AATTTTCAAGCCCACCCACACAATAGCCATGCAGCTCTCCATGACTTCCC
GTGACCCGCACGCCAACATGCCAA
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Synonyms
Publications