jgi.p|Nanoce1779_2|587638, mRNA_4717 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587638
Unique NamemRNA_4717
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1125
Alignment locationscaffold_9:469364..470564 -

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Properties
Property NameValue
TranscriptId587724
TrackFilteredModels2
ProteinId587638
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:469364..470564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587638gene_4717Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587638mRNA_4717-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4717CDS_4717Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4717 ID=mRNA_4717|Name=jgi.p|Nanoce1779_2|587638|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
AGAGTGAGAATGACTGTTGTACAGACCGCGGGCAGGGCCGATTTTTCTTG
CGAAGCACCCGGCGTTTTGATTGTTTCGTTCGTCTCCTCCGTCTTCTCTT
CATGCCATGGTATCGCATCAAACACATACACCCGCTATATTTCTATTCCT
GGGCTGCTGTCTTTCACCTCTTTTCCCCCTTCTCTCCACCTTATTTTCTT
TCCCTTTGTCTATCTCTCTCCCTATCTCTCTCTCTCCATCATCTCTCCAC
TCTATTCCATTTGGCGCTTCCTCGTCGCTTCGCATCTTAGTTTCCTTCCT
CTAGTTCCTCTTCTCTGAAAGGATTGTTGTTTTTCGTGCGCCACTTTCCA
CGCGTGCATGTCGGCCGCAGCGGCCCGTCTTTGCTCTCACCCCCCAACCA
AGAATATGTTTTACATCAGTAGATCTCCGAGGAGAAAGACAAAAAGAGGA
AGTCAACAGAGATATTGCTTCCTCAAATGCAACAGCATCCGTCTGACATC
CCCTCTTCCCCTTCCTTACCAATCCCCTCCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCTCTCTCTCCTAACCGGGCACGAATCCACTTAGT
CCGGAACAACCAGGCAGGCACCCCCAACGACCGGCACCCATATCTCTTTC
TTCATGGCAGGCTGTCTGGCTCATTACACTATACGTGACCTACTTCAAAC
ACTGCACAGAAGCCTCCCTTCTCCCCCCCCCCTTTCACTATCACTCCTCC
TGGTTTAGATAGAAAACATACATACACTTTTTTCCTGTCTTCCCCTTTTC
CTCCCTCCGTCTCTCGATCATTTATCAAGACGTACAGCGCGAGATGCATC
ATATTGACACGCCCTCCGTCCATTCCTCCGTCCCCCCCTCCCTTTCCTCC
TCCCACTCTTCCCCTTTGCCATGTATATACACCTGTTGATATCCTTTATT
CCCTCCTTTCTTCCTTTCCACCCTCCTTCCCTCACTTCACGCCTCCACCG
CCCCACTCATCCGTCCCCTCCCTCTTCCTCCTCCTCCTCCACTGCTCACT
GCCGCGGTACTCTTCGCCTCCTTCTCCCCCTCCCCTCCCTTCTTCTTCCC
CTTGTCCCCCCCTCCCTCCTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|587638

>mRNA_4717-protein ID=mRNA_4717-protein|Name=jgi.p|Nanoce1779_2|587638|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MTVVQTAGRADFSCEAPGVLIVSFVSSVFSSCHGIASNTYTRYISIPGLL
SFTSFPPSLHLIFFPFVYLSPYLSLSIISPLYSIWRFLVASHLSFLPLVP
LL*
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mRNA from alignment at scaffold_9:469364..470564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4717 ID=mRNA_4717|Name=jgi.p|Nanoce1779_2|587638|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at scaffold_9:469364..470564- (Nannochloropsis oceanica)
AGAGTGAGAATGACTGTTGTACAGACCGCGGGCAGGGCCGATTTTTCTTG
CGAAGCACCCGGCGTTTTGATTGTTTCGTTCGTCTCCTCCGTCTTCTCTT
CATGCCATGGTATCGCATCAAACACATACACCCGCTATATTTCTATTCCT
GGGCTGCTGTCTTTCACCTCTTTTCCCCCTTCTCTCCACCTTATTTTCTT
TCCCTTTGTCTATCTCTCTCCCTATCTCTCTCTCTCCATCATCTCTCCAC
TCTATTCCATTTGGCGCTTCCTCGTCGCTTCGCATCTTAGTTTCCTTCCT
CTAGTTCCTCTTCTCTGAAAGGATTGTTGTTTTTCGTGCGCCACTTTCCA
CGCGTGCATGTCGGCCGCAGCGGCCCGTCTTTGCTCTCACCCCCCAACCA
AGAATATGTTTTACATCAGTAGATCTCCGAGGAGAAAGACAAAAAGAGGA
AGTCAACAGAGATATTGCTTCCTCAAATGCAACAGCATCCGTCTGACATC
CCCTCTTCCCCTTCCTTACCAATCCCCTCCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCT
CCTAACCGGGCACGAATCCACTTAGTCCGGAACAACCAGGCAGGCACCCC
CAACGACCGGCACCCATATCTCTTTCTTCATGGCAGGCTGTCTGGCTCAT
TACACTATACGTGACCTACTTCAAACACTGCACAGAAGCCTCCCTTCTCC
CCCCCCCCTTTCACTATCACTCCTCCTGGTTTAGATAGAAAACATACATA
CACTTTTTTCCTGTCTTCCCCTTTTCCTCCCTCCGTCTCTCGATCATTTA
TCAAGACGTACAGCGCGAGATGCATCATATTGACACGCCCTCCGTCCATT
CCTCCGTCCCCCCCTCCCTTTCCTCCTCCCACTCTTCCCCTTTGCCATGT
ATATACACCTGTTGATATCCTTTATTCCCTCCTTTCTTCCTTTCCACCCT
CCTTCCCTCACTTCACGCCTCCACCGCCCCACTCATCCGTCCCCTCCCTC
TTCCTCCTCCTCCTCCACTGCTCACTGCCGCGGTACTCTTCGCCTCCTTC
TCCCCCTCCCCTCCCTTCTTCTTCCCCTTGTCCCCCCCTCCCTCCTCCTC
C
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Coding sequence (CDS) from alignment at scaffold_9:469364..470564-

>mRNA_4717 ID=mRNA_4717|Name=jgi.p|Nanoce1779_2|587638|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_9:469364..470564- (Nannochloropsis oceanica)
ATGACTGTTGTACAGACCGCGGGCAGGGCCGATTTTTCTTGCGAAGCACC
CGGCGTTTTGATTGTTTCGTTCGTCTCCTCCGTCTTCTCTTCATGCCATG
GTATCGCATCAAACACATACACCCGCTATATTTCTATTCCTGGGCTGCTG
TCTTTCACCTCTTTTCCCCCTTCTCTCCACCTTATTTTCTTTCCCTTTGT
CTATCTCTCTCCCTATCTCTCTCTCTCCATCATCTCTCCACTCTATTCCA
TTTGGCGCTTCCTCGTCGCTTCGCATCTTAGTTTCCTTCCTCTAGTTCCT
CTTCTCTGA
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Synonyms
Publications