jgi.p|Nanoce1779_2|587630, mRNA_4714 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587630
Unique NamemRNA_4714
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length655
Alignment locationscaffold_9:464980..466166 -

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Properties
Property NameValue
TranscriptId587716
TrackFilteredModels2
ProteinId587630
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:464980..466166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587630gene_4714Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587630mRNA_4714-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4714CDS_4714Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4714 ID=mRNA_4714|Name=jgi.p|Nanoce1779_2|587630|organism=Nannochloropsis oceanica|type=mRNA|length=655bp
CAGAGGTCAAGGCATACACCTGTCTCTTCATAAAGCCGTCATTGCAGCCG
TCGCCATCCAATGGGTACCTTGCGTCGCTTCACCTGCGAGGATCTCCTCC
GTTTTAACAACATCAACCTCGACGTGCTGACGGAAACGTACAACCTGGGG
TTCTACCTGCAGTACCTTTCGACATGGCCCGATTATTTTATTGTCGAAGA
AGCCCCCCACAAGGAAGGGCGTCTCACTTCCTACATAATGGGGAAAGCTG
AAGGAAAGGGAGAAAAATGGCATGGGCACGTGACGGCCGTTACGGTCGCG
CCAGAATTCCGACGCTTGGGCCGCGCCAGACTGATGATGGACTTGTTGGA
AGAAGTGTCGAATGAGGGGTACCATGCTTATTTTGTGGATTTGTTTGTGC
GGGTGTCCAATACGTTGGCCATACGGATGTATGAGAAGTTCGGGTATTCT
GTTTATCGGCGAGTGTTGGGCTACTACTCGGGGGAAGAGGACGCGTTTGA
CATGCGGAAAGCCCTCCCACGAGACGTGCACAAAAAGAGTGTAATACCAC
TCACACGGCCCGTCACCCCCGCAGAGCTTGAATGGTGATATCTATGGAAT
GAAGTATCATCGGTACCGGCCAAATCATAAATTAAAAAACGGGAAACGAC
AGACA
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protein sequence of jgi.p|Nanoce1779_2|587630

>mRNA_4714-protein ID=mRNA_4714-protein|Name=jgi.p|Nanoce1779_2|587630|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MGTLRRFTCEDLLRFNNINLDVLTETYNLGFYLQYLSTWPDYFIVEEAPH
KEGRLTSYIMGKAEGKGEKWHGHVTAVTVAPEFRRLGRARLMMDLLEEVS
NEGYHAYFVDLFVRVSNTLAIRMYEKFGYSVYRRVLGYYSGEEDAFDMRK
ALPRDVHKKSVIPLTRPVTPAELEW*
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mRNA from alignment at scaffold_9:464980..466166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4714 ID=mRNA_4714|Name=jgi.p|Nanoce1779_2|587630|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp|location=Sequence derived from alignment at scaffold_9:464980..466166- (Nannochloropsis oceanica)
CAGAGGTCAAGGCATACACCTGTCTCTTCATAAAGCCGTCATTGCAGCCG
TCGCCATCCAATGGTAAGATTTGGGCCCTTTGTTTAACCCCAATCTTCCT
TTCCCGCTTCCTGCCCGATTTGCGCCCACGTAAAGCATCTCCTTAAAGGC
CTTTACATTACTATCTGCTCCTTCCATGCTCCTGCTCCTACTCCCCTCGA
TCCATACTCATCTTCTTTCAAGCCACAAACAAGAATATCTCCCATATATT
TAATCCAGAATTTCTTGCGTCGGTTCACATACGAAGATCTCCTCTTTAAC
AACATCAACCTTGTGGTCCTGACGAAAACACACGCACTGATATGTCTTGA
GTCCATCTCGTTCCTCTCTGCACGCTTATCCCTCTCTCATACTCCACGCG
AATTAGGGTACCTTGCGTCGCTTCACCTGCGAGGATCTCCTCCGTTTTAA
CAACATCAACCTCGACGTGCTGACGGAAACGTACAACCTGGGGTTCTACC
TGCAGTACCTTTCGACATGGCCCGATTATTTTATTGTCGAAGAAGCCCCC
CACAAGGAAGGGCGTCTCACTTCCTACATAATGGGGAAAGCTGAAGGAAA
GGGAGAAAAATGGCATGGGCACGTGACGGCCGTTACGGTCGCGCCAGAAT
TCCGACGCTTGGGCCGCGCCAGACTGATGATGGACTTGTTGGAAGAAGTG
TCGAATGAGGGGTACCATGCTTATTTTGTGGATTTGTTTGTGCGGGTGTC
CAATACGTTGGCCATACGGATGTATGAGAAGTTCGGGTATTCTGTTTATC
GGCGAGTGTTGGGCTACTACTCGGGGGAAGAGGACGCGTTTGGTAGGTGC
GTGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAAAGGGGAGTGATTCAATTCGTTATCACTCTCTTTTTCTCACTACATGT
ATACAAACATATACTTTTATCCTTTCAAACGCACGCACCCCCCCCCTTCA
TTTCCCCTGTCGCTTCTCCCCGACCACACAGACATGCGGAAAGCCCTCCC
ACGAGACGTGCACAAAAAGAGTGTAATACCACTCACACGGCCCGTCACCC
CCGCAGAGCTTGAATGGTGATATCTATGGAATGAAGTATCATCGGTACCG
GCCAAATCATAAATTAAAAAACGGGAAACGACAGACA
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Coding sequence (CDS) from alignment at scaffold_9:464980..466166-

>mRNA_4714 ID=mRNA_4714|Name=jgi.p|Nanoce1779_2|587630|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_9:464980..466166- (Nannochloropsis oceanica)
ACATGCGGAAAGCCCTCCCACGAGACGTGCACAAAAAGAGTGTAATACCA
CTCACACGGCCCGTCACCCCCGCAGAGCTTGAATGGTGAGGTACCTTGCG
TCGCTTCACCTGCGAGGATCTCCTCCGTTTTAACAACATCAACCTCGACG
TGCTGACGGAAACGTACAACCTGGGGTTCTACCTGCAGTACCTTTCGACA
TGGCCCGATTATTTTATTGTCGAAGAAGCCCCCCACAAGGAAGGGCGTCT
CACTTCCTACATAATGGGGAAAGCTGAAGGAAAGGGAGAAAAATGGCATG
GGCACGTGACGGCCGTTACGGTCGCGCCAGAATTCCGACGCTTGGGCCGC
GCCAGACTGATGATGGACTTGTTGGAAGAAGTGTCGAATGAGGGGTACCA
TGCTTATTTTGTGGATTTGTTTGTGCGGGTGTCCAATACGTTGGCCATAC
GGATGTATGAGAAGTTCGGGTATTCTGTTTATCGGCGAGTGTTGGGCTAC
TACTCGGGGGAAGAGGACGCGTTTGATGACATGCGGAAAGCCCTCCCACG
AGACGTGCACAAAAAGAGTGTAATACCACTCACACGGCCCGTCACCCCCG
CAGAGCTTGAATGGTGAGGTACCTTGCGTCGCTTCACCTGCGAGGATCTC
CTCCGTTTTAACAACATCAACCTCGACGTGCTGACGGAAACGTACAACCT
GGGGTTCTACCTGCAGTACCTTTCGACATGGCCCGATTATTTTATTGTCG
AAGAAGCCCCCCACAAGGAAGGGCGTCTCACTTCCTACATAATGGGGAAA
GCTGAAGGAAAGGGAGAAAAATGGCATGGGCACGTGACGGCCGTTACGGT
CGCGCCAGAATTCCGACGCTTGGGCCGCGCCAGACTGATGATGGACTTGT
TGGAAGAAGTGTCGAATGAGGGGTACCATGCTTATTTTGTGGATTTGTTT
GTGCGGGTGTCCAATACGTTGGCCATACGGATGTATGAGAAGTTCGGGTA
TTCTGTTTATCGGCGAGTGTTGGGCTACTACTCGGGGGAAGAGGACGCGT
TTGATGACATGCGGAAAGCCCTCCCACGAGACGTGCACAAAAAGAGTGTA
ATACCACTCACACGGCCCGTCACCCCCGCAGAGCTTGAATGGTGAGGTAC
CTTGCGTCGCTTCACCTGCGAGGATCTCCTCCGTTTTAACAACATCAACC
TCGACGTGCTGACGGAAACGTACAACCTGGGGTTCTACCTGCAGTACCTT
TCGACATGGCCCGATTATTTTATTGTCGAAGAAGCCCCCCACAAGGAAGG
GCGTCTCACTTCCTACATAATGGGGAAAGCTGAAGGAAAGGGAGAAAAAT
GGCATGGGCACGTGACGGCCGTTACGGTCGCGCCAGAATTCCGACGCTTG
GGCCGCGCCAGACTGATGATGGACTTGTTGGAAGAAGTGTCGAATGAGGG
GTACCATGCTTATTTTGTGGATTTGTTTGTGCGGGTGTCCAATACGTTGG
CCATACGGATGTATGAGAAGTTCGGGTATTCTGTTTATCGGCGAGTGTTG
GGCTACTACTCGGGGGAAGAGGACGCGTTTGATG
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Synonyms
Publications