jgi.p|Nanoce1779_2|666396, mRNA_4713 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|666396
Unique Name	mRNA_4713
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2093
Alignment location	scaffold_9:462711..464959 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	666482
Track	FilteredModels2
ProteinId	666396

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:462711..464959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|666396	gene_4713	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|666396	mRNA_4713-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4713	CDS_4713	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:462711..464959+
coding sequence from alignment at scaffold_9:462711..464959+

mRNA sequence

>mRNA_4713 ID=mRNA_4713|Name=jgi.p|Nanoce1779_2|666396|organism=Nannochloropsis oceanica|type=mRNA|length=2093bp
ATGGGGAAGAAGCAGCATTCCAAGGACCGCATGTTCCTGACCGCTACGGA
ATGGAAAGAACTGGGCGGAAAGCGGGAGACAGCAGGTCGATCCAGCTATC
AGCCCCTGGCTTTTGATTCATGTGCCCTAAGCTTGCAGCCGTTCGAGACG
CCCGTGTGCACTCCAGAAGGGGTCCTGTTCGACATCCTGAATTTATTCCC
TTACGTGCAGAAGCACAAGAAGAGCCCGATTACGGGGGAGTCGATGACGT
CCAAGGAGATTGTGCGGTTGAACATGGCGAAGAATAATGGGGGGAAGTGG
CATTGTCCTGTCACCTTTAAAGAGTTCACGGATCACACCCACGTCGTGGC
CGTCAAGCCCTCAGGGAATGTGTATGCATATGAGGCGGTGGAAGAGCTGA
ACATTAAAAGGAAGAACTGGACTGATTTGATGACGGGTGAGCCGTTCACA
CGCAAGGATATCATCACCTTGCAAGACCCCGGCAACGCCACGCACATGTC
TTTACGGGACATCAGTAATTTTAAGCACCTCGAAGAAATGCGTGCCGAGG
AAGCTGCGCGCGTCGCGGGCGAATCGGCTGACCAAAAAGTAACGAGTACA
ATTCGCACGAATGCTAGTACGGAGATGGTGATCAAGGAGTTCCAAAAACA
GAAACGGGCCCGCGAAGACGAAGAGGCCCTCAAAGCCGCAGAAGCCGAAG
CAGCCTCCGTGGACGCCCAAGGCAGAGAAGCAGAGGAAGAGGAAGAGCTG
CGGAAGAAGGGTGGAGGGGGAGCAACAAAGAAACGACGGCTCATCCTCAT
TCAGGACTTGCATCCAGGTAAAGCGATTACCACAGGTGCTGCCGCTGCTT
CCTTCACTGCCACGGGCGTGGACCTCGCCACGGAAAACACTTGCCGTCCT
GCCTCCGAAGAAGAAATCAGGCTGGTCCGTTACAAATACGCCAGAAAACT
GGGCAAAAAGGGTTATGTGCAGCTGCAGACCACACTGGGGAATGTCAATT
TGGAGATCCACTGTGACTTCGTCCCGAGGACCAGCGAGAATTTCTTGGGG
CTGTGCTTGAGGGGGTTTTACGATGGTCTGTCATTCCATCGTGTCATTCA
AGGCTTCATGGCGCAGGGAGGTTGTCCGCAGGGGGATGGAAGGGGAGGGG
CGACGGTTTGGAGTTTGGGGGGGGAGGGGGGGGGGGGGGAAGCAGGGGCC
CAAGGCGGGGGGTTTAAGGATGAATTTGATAGCCGGCTGGTGCATGATAA
GAGGGGGATCTTGAGCATGGCAAACTCGGGGAAAGATACCAATCGCTCGC
AATTTTTTATCACCTTTAAGGGGTGTCGGCACTTGGACAACAAGCACGCC
GTCTTCGGGAGGGTGGTGGGTGGCATGGACGTGCTGAAGAAAATCGAGGA
GGTGGAGGTCGGGAAGGAGGACAAGCCGAAGGAGGAGGTGAAGATCATCA
AGGCAGTGGCGTTTGTGAACCCTTTTGAGGAGAGTGATAAATTGTTTGAT
GCGTTCATTGAAGAACAACGCAGGGAGCGACTGGCCAAGGAGGCGTTTTG
GAAGAATAATAATGCCCTGGGATTTACCCGGAAAAAGGAGGGAGGGGAGG
GAGGGAGGGATGTGGGGATGGAGAGGTCAGCGCAGGAGGTAGCAGAGGCA
GAGAGGACGGGTGGCTTCTATTCTCAGCCGGGACCACAGGCAAGCGCGGG
GTGGGGAGGGGTTGGGAAATATTTGAGTGGTGGAGGAGGAGGAGGGGGAG
GAAAAGACGGAGGGAGGAAAATGACAGTGCTGCCGCAGAAGGTGGCAGCA
GTGGGGAGTGAGGCGGAATACCGGCAGCTGTTGCAGGGGCCGAGCCCGCA
CCCGAAGGAATCGAGCAAGGCATTTCAGCAGCAGGCGTTAGAGGGAGGAG
GGGGGAAAGGGAAGAAGCAGCAAAGCAAGGGGTTCGGGGACTTTGAGGGG
TGGTGAGAAGGGGGGCAAAAGAAGGCATAAAGAACAATGTACAGCATGTG
GAAGGCGTAATTGGACATCAAATGAGGGGACAAGGCAGAAGAATGAAAAA
TATTTAAAGGGAAAAAAAGAAGTACCAATTAGAAACGATGCTG

protein sequence of jgi.p|Nanoce1779_2|666396

>mRNA_4713-protein ID=mRNA_4713-protein|Name=jgi.p|Nanoce1779_2|666396|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MGKKQHSKDRMFLTATEWKELGGKRETAGRSSYQPLAFDSCALSLQPFET
PVCTPEGVLFDILNLFPYVQKHKKSPITGESMTSKEIVRLNMAKNNGGKW
HCPVTFKEFTDHTHVVAVKPSGNVYAYEAVEELNIKRKNWTDLMTGEPFT
RKDIITLQDPGNATHMSLRDISNFKHLEEMRAEEAARVAGESADQKVTST
IRTNASTEMVIKEFQKQKRAREDEEALKAAEAEAASVDAQGREAEEEEEL
RKKGGGGATKKRRLILIQDLHPGKAITTGAAAASFTATGVDLATENTCRP
ASEEEIRLVRYKYARKLGKKGYVQLQTTLGNVNLEIHCDFVPRTSENFLG
LCLRGFYDGLSFHRVIQGFMAQGGCPQGDGRGGATVWSLGGEGGGGEAGA
QGGGFKDEFDSRLVHDKRGILSMANSGKDTNRSQFFITFKGCRHLDNKHA
VFGRVVGGMDVLKKIEEVEVGKEDKPKEEVKIIKAVAFVNPFEESDKLFD
AFIEEQRRERLAKEAFWKNNNALGFTRKKEGGEGGRDVGMERSAQEVAEA
ERTGGFYSQPGPQASAGWGGVGKYLSGGGGGGGGKDGGRKMTVLPQKVAA
VGSEAEYRQLLQGPSPHPKESSKAFQQQALEGGGGKGKKQQSKGFGDFEG
W*

mRNA from alignment at scaffold_9:462711..464959+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4713 ID=mRNA_4713|Name=jgi.p|Nanoce1779_2|666396|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp|location=Sequence derived from alignment at scaffold_9:462711..464959+ (Nannochloropsis oceanica)
ATGGGGAAGAAGCAGCATTCCAAGGACCGCATGTTCCTGACCGCTACGGA
ATGGAAAGAACTGGGCGGAAAGCGGGAGACAGCAGGTCGATCCAGCTATC
AGCCCCTGGCTTTTGATTCATGTGCCCTAAGCTTGCAGCCGTTCGAGACG
CCCGTGTGCACTCCAGAAGGGGTCCTGTTCGACATCCTGAATTTATTCCC
TTACGTGCAGAAGCACAAGAAGAGCCCGATTACGGGGGAGTCGATGACGT
CCAAGGAGATTGTGCGGTTGAACATGGCGAAGAATAATGGGGGGAAGTGG
CATTGTCCTGTCACCTTTAAAGAGTTCACGGATCACACCCACGTCGTGGC
CGTCAAGCCCTCAGGGAATGTGTATGCATATGAGGCGGTGGAAGAGCTGA
ACATTAAAAGGAAGAACTGGACTGATTTGATGACGGGTGAGCCGTTCACA
CGCAAGGATGTACGTATGGGAGGAGGGATGGAGTCCGACGTGGGACGGAA
AAGGTCATTTCCAAGTTTAAAGGTAATCACGCAGTATACGTTTGCATTCA
GGACGTAGACATGTTTCCATTACCCCTTTCTTGTCCCCTTCCTCCACTTT
TTCCCTTTCCTCCAGATCATCACCTTGCAAGACCCCGGCAACGCCACGCA
CATGTCTTTACGGGACATCAGTAATTTTAAGCACCTCGAAGAAATGCGTG
CCGAGGAAGCTGCGCGCGTCGCGGGCGAATCGGCTGACCAAAAAGTAACG
AGTACAATTCGCACGAATGCTAGTACGGAGATGGTGATCAAGGAGTTCCA
AAAACAGAAACGGGCCCGCGAAGACGAAGAGGCCCTCAAAGCCGCAGAAG
CCGAAGCAGCCTCCGTGGACGCCCAAGGCAGAGAAGCAGAGGAAGAGGAA
GAGCTGCGGAAGAAGGGTGGAGGGGGAGCAACAAAGAAACGACGGCTCAT
CCTCATTCAGGACTTGCATCCAGGTAAAGCGATTACCACAGGTGCTGCCG
CTGCTTCCTTCACTGCCACGGGCGTGGACCTCGCCACGGAAAACACTTGC
CGTCCTGCCTCCGAAGAAGAAATCAGGCTGGTCCGTTACAAATACGCCAG
AAAACTGGGCAAAAAGGGTTATGTGCAGCTGCAGACCACACTGGGGAATG
TCAATTTGGAGATCCACTGTGACTTCGTCCCGAGGACCAGCGAGAATTTC
TTGGGGCTGTGCTTGAGGGGGTTTTACGATGGTCTGTCATTCCATCGTGT
CATTCAAGGCTTCATGGCGCAGGGAGGTTGTCCGCAGGGGGATGGAAGGG
GAGGGGCGACGGTTTGGAGTTTGGGGGGGGAGGGGGGGGGGGGGGAAGCA
GGGGCCCAAGGCGGGGGGTTTAAGGATGAATTTGATAGCCGGCTGGTGCA
TGATAAGAGGGGGATCTTGAGCATGGCAAACTCGGGGAAAGATACCAATC
GCTCGCAATTTTTTATCACCTTTAAGGGGTGTCGGCACTTGGACAACAAG
CACGCCGTCTTCGGGAGGGTGGTGGGTGGCATGGACGTGCTGAAGAAAAT
CGAGGAGGTGGAGGTCGGGAAGGAGGACAAGCCGAAGGAGGAGGTGAAGA
TCATCAAGGCAGTGGCGTTTGTGAACCCTTTTGAGGAGAGTGATAAATTG
TTTGATGCGTTCATTGAAGAACAACGCAGGGAGCGACTGGCCAAGGAGGC
GTTTTGGAAGAATAATAATGCCCTGGGATTTACCCGGAAAAAGGAGGGAG
GGGAGGGAGGGAGGGATGTGGGGATGGAGAGGTCAGCGCAGGAGGTAGCA
GAGGCAGAGAGGACGGGTGGCTTCTATTCTCAGCCGGGACCACAGGCAAG
CGCGGGGTGGGGAGGGGTTGGGAAATATTTGAGTGGTGGAGGAGGAGGAG
GGGGAGGAAAAGACGGAGGGAGGAAAATGACAGTGCTGCCGCAGAAGGTG
GCAGCAGTGGGGAGTGAGGCGGAATACCGGCAGCTGTTGCAGGGGCCGAG
CCCGCACCCGAAGGAATCGAGCAAGGCATTTCAGCAGCAGGCGTTAGAGG
GAGGAGGGGGGAAAGGGAAGAAGCAGCAAAGCAAGGGGTTCGGGGACTTT
GAGGGGTGGTGAGAAGGGGGGCAAAAGAAGGCATAAAGAACAATGTACAG
CATGTGGAAGGCGTAATTGGACATCAAATGAGGGGACAAGGCAGAAGAAT
GAAAAATATTTAAAGGGAAAAAAAGAAGTACCAATTAGAAACGATGCTG

Coding sequence (CDS) from alignment at scaffold_9:462711..464959+

>mRNA_4713 ID=mRNA_4713|Name=jgi.p|Nanoce1779_2|666396|organism=Nannochloropsis oceanica|type=CDS|length=3912bp|location=Sequence derived from alignment at scaffold_9:462711..464959+ (Nannochloropsis oceanica)
ATGGGGAAGAAGCAGCATTCCAAGGACCGCATGTTCCTGACCGCTACGGA
ATGGAAAGAACTGGGCGGAAAGCGGGAGACAGCAGGTCGATCCAGCTATC
AGCCCCTGGCTTTTGATTCATGTGCCCTAAGCTTGCAGCCGTTCGAGACG
CCCGTGTGCACTCCAGAAGGGGTCCTGTTCGACATCCTGAATTTATTCCC
TTACGTGCAGAAGCACAAGAAGAGCCCGATTACGGGGGAGTCGATGACGT
CCAAGGAGATTGTGCGGTTGAACATGGCGAAGAATAATGGGGGGAAGTGG
CATTGTCCTGTCACCTTTAAAGAGTTCACGGATCACACCCACGTCGTGGC
CGTCAAGCCCTCAGGGAATGTGTATGCATATGAGGCGGTGGAAGAGCTGA
ACATTAAAAGGAAGAACTGGACTGATTTGATGACGGGTGAGCCGTTCACA
CGCAAGGATATCATCACCTTGCAAGACCCCGGCAACGCCACGCACATGTC
TTTACGGGACATCAGTAATTTTAAGCACCTCGAAGAAATGCGTGCCGAGG
AAGCTGCGCGCGTCGCGGGCGAATCGGCTGACCAAAAAGTAACGAGTACA
ATTCGCACGAATGCTAGTACGGAGATGGTGATCAAGGAGTTCCAAAAACA
GAAACGGGCCCGCGAAGACGAAGAGGCCCTCAAAGCCGCAGAAGCCGAAG
CAGCCTCCGTGGACGCCCAAGGCAGAGAAGCAGAGGAAGAGGAAGAGCTG
CGGAAGAAGGGTGGAGGGGGAGCAACAAAGAAACGACGGCTCATCCTCAT
TCAGGACTTGCATCCAGGTAAAGCGATTACCACAGGTGCTGCCGCTGCTT
CCTTCACTGCCACGGGCGTGGACCTCGCCACGGAAAACACTTGCCGTCCT
GCCTCCGAAGAAGAAATCAGGCTGGTCCGTTACAAATACGCCAGAAAACT
GGGCAAAAAGGGTTATGTGCAGCTGCAGACCACACTGGGGAATGTCAATT
TGGAGATCCACTGTGACTTCGTCCCGAGGACCAGCGAGAATTTCTTGGGG
CTGTGCTTGAGGGGGTTTTACGATGGTCTGTCATTCCATCGTGTCATTCA
AGGCTTCATGGCGCAGGGAGGTTGTCCGCAGGGGGATGGAAGGGGAGGGG
CGACGGTTTGGAGTTTGGGGGGGGAGGGGGGGGGGGGGGAAGCAGGGGCC
CAAGGCGGGGGGTTTAAGGATGAATTTGATAGCCGGCTGGTGCATGATAA
GAGGGGGATCTTGAGCATGGCAAACTCGGGGAAAGATACCAATCGCTCGC
AATTTTTTATCACCTTTAAGGGGTGTCGGCACTTGGACAACAAGCACGCC
GTCTTCGGGAGGGTGGTGGGTGGCATGGACGTGCTGAAGAAAATCGAGGA
GGTGGAGGTCGGGAAGGAGGACAAGCCGAAGGAGGAGGTGAAGATCATCA
AGGCAGTGGCGTTTGTGAACCCTTTTGAGGAGAGTGATAAATTGTTTGAT
GCGTTCATTGAAGAACAACGCAGGGAGCGACTGGCCAAGGAGGCGTTTTG
GAAGAATAATAATGCCCTGGGATTTACCCGGAAAAAGGAGGGAGGGGAGG
GAGGGAGGGATGTGGGGATGGAGAGGTCAGCGCAGGAGGTAGCAGAGGCA
GAGAGGACGGGTGGCTTCTATTCTCAGCCGGGACCACAGGCAAGCGCGGG
GTGGGGAGGGGTTGGGAAATATTTGAGTGGTGGAGGAGGAGGAGGGGGAG
GAAAAGACGGAGGGAGGAAAATGACAGTGCTGCCGCAGAAGGTGGCAGCA
GTGGGGAGTGAGGCGGAATACCGGCAGCTGTTGCAGGGGCCGAGCCCGCA
CCCGAAGGAATCGAGCAAGGCATTTCAGCAGCAGGCGTTAGAGGGAGGAG
GGGGGAAAGGGAAGAAGCAGCAAAGCAAGGGGTTCGGGGACTTTGAGGGG
TGGTGAATGGGGAAGAAGCAGCATTCCAAGGACCGCATGTTCCTGACCGC
TACGGAATGGAAAGAACTGGGCGGAAAGCGGGAGACAGCAGGTCGATCCA
GCTATCAGCCCCTGGCTTTTGATTCATGTGCCCTAAGCTTGCAGCCGTTC
GAGACGCCCGTGTGCACTCCAGAAGGGGTCCTGTTCGACATCCTGAATTT
ATTCCCTTACGTGCAGAAGCACAAGAAGAGCCCGATTACGGGGGAGTCGA
TGACGTCCAAGGAGATTGTGCGGTTGAACATGGCGAAGAATAATGGGGGG
AAGTGGCATTGTCCTGTCACCTTTAAAGAGTTCACGGATCACACCCACGT
CGTGGCCGTCAAGCCCTCAGGGAATGTGTATGCATATGAGGCGGTGGAAG
AGCTGAACATTAAAAGGAAGAACTGGACTGATTTGATGACGGGTGAGCCG
TTCACACGCAAGGATATCATCACCTTGCAAGACCCCGGCAACGCCACGCA
CATGTCTTTACGGGACATCAGTAATTTTAAGCACCTCGAAGAAATGCGTG
CCGAGGAAGCTGCGCGCGTCGCGGGCGAATCGGCTGACCAAAAAGTAACG
AGTACAATTCGCACGAATGCTAGTACGGAGATGGTGATCAAGGAGTTCCA
AAAACAGAAACGGGCCCGCGAAGACGAAGAGGCCCTCAAAGCCGCAGAAG
CCGAAGCAGCCTCCGTGGACGCCCAAGGCAGAGAAGCAGAGGAAGAGGAA
GAGCTGCGGAAGAAGGGTGGAGGGGGAGCAACAAAGAAACGACGGCTCAT
CCTCATTCAGGACTTGCATCCAGGTAAAGCGATTACCACAGGTGCTGCCG
CTGCTTCCTTCACTGCCACGGGCGTGGACCTCGCCACGGAAAACACTTGC
CGTCCTGCCTCCGAAGAAGAAATCAGGCTGGTCCGTTACAAATACGCCAG
AAAACTGGGCAAAAAGGGTTATGTGCAGCTGCAGACCACACTGGGGAATG
TCAATTTGGAGATCCACTGTGACTTCGTCCCGAGGACCAGCGAGAATTTC
TTGGGGCTGTGCTTGAGGGGGTTTTACGATGGTCTGTCATTCCATCGTGT
CATTCAAGGCTTCATGGCGCAGGGAGGTTGTCCGCAGGGGGATGGAAGGG
GAGGGGCGACGGTTTGGAGTTTGGGGGGGGAGGGGGGGGGGGGGGAAGCA
GGGGCCCAAGGCGGGGGGTTTAAGGATGAATTTGATAGCCGGCTGGTGCA
TGATAAGAGGGGGATCTTGAGCATGGCAAACTCGGGGAAAGATACCAATC
GCTCGCAATTTTTTATCACCTTTAAGGGGTGTCGGCACTTGGACAACAAG
CACGCCGTCTTCGGGAGGGTGGTGGGTGGCATGGACGTGCTGAAGAAAAT
CGAGGAGGTGGAGGTCGGGAAGGAGGACAAGCCGAAGGAGGAGGTGAAGA
TCATCAAGGCAGTGGCGTTTGTGAACCCTTTTGAGGAGAGTGATAAATTG
TTTGATGCGTTCATTGAAGAACAACGCAGGGAGCGACTGGCCAAGGAGGC
GTTTTGGAAGAATAATAATGCCCTGGGATTTACCCGGAAAAAGGAGGGAG
GGGAGGGAGGGAGGGATGTGGGGATGGAGAGGTCAGCGCAGGAGGTAGCA
GAGGCAGAGAGGACGGGTGGCTTCTATTCTCAGCCGGGACCACAGGCAAG
CGCGGGGTGGGGAGGGGTTGGGAAATATTTGAGTGGTGGAGGAGGAGGAG
GGGGAGGAAAAGACGGAGGGAGGAAAATGACAGTGCTGCCGCAGAAGGTG
GCAGCAGTGGGGAGTGAGGCGGAATACCGGCAGCTGTTGCAGGGGCCGAG
CCCGCACCCGAAGGAATCGAGCAAGGCATTTCAGCAGCAGGCGTTAGAGG
GAGGAGGGGGGAAAGGGAAGAAGCAGCAAAGCAAGGGGTTCGGGGACTTT
GAGGGGTGGTGA

Synonyms

Publications