jgi.p|Nanoce1779_2|441141, mRNA_4712 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|441141
Unique Name	mRNA_4712
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2709
Alignment location	scaffold_9:459647..462355 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	441227
Track	FilteredModels2
ProteinId	441141

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:459647..462355 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|441141	gene_4712	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|441141	mRNA_4712-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4712	CDS_4712	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:459647..462355-
coding sequence from alignment at scaffold_9:459647..462355-

mRNA sequence

>mRNA_4712 ID=mRNA_4712|Name=jgi.p|Nanoce1779_2|441141|organism=Nannochloropsis oceanica|type=mRNA|length=2709bp
GGGGCTTTTACCATCATGATGATATCATTATGATCATGCATCATCTCGTG
CACTCCTCCATCTTCCCTAACTTTCCGCATCCACTCACGCCTATACCTAC
TGACTTTATCATAGGTGTTCGTGCTTTGTTCGTCTTTCTTGGATCTGGAG
TCTCTTTCGGTTTAGTTTGCGATCTTGCTGCGGCAACGCCTGATTGAGAC
GCAAGAAGGGAGAAGAAGAACATACGTCCACACAAAAAGCCCTCGCAACC
ATGGCAACGGTACCCACAGCCTCGGAGCAGGAGCAGGAGCGACATAGCTC
AAGGCCAGGCTTTGTAGCTCTGCATATAGAAACACTATTTTCCTGGCTTG
ATTGCATCAGCAACAGCAACAACAGCAAGAGGATCGTTGTGCCCCGTTTC
GGGGCCGAGCAAGTCCTGGCCTACCTCAGGGAGGCTGAAAACAACAGGGG
CGAGCCATTGACTCTCATCATTGTGGCCCCCGGAGAAGCGGCTAAAAGGC
TCTTGGTGGGCGTACGAGGGGACCCAAGCCTGGCCTCACTGCTCGAGGGC
CTGCATATCATCACCACTGCGACCGTGAACGAGGAAGAGACGTTGGTAGA
CCTTCGGCAAGGGATAGATAATTTGCTGGGAAAGAAAGGCAAGAACGACG
ACAATGACAGGAGCGCTTCAATTTCGGCGTCTGTGTGCTGGCCTTTACTT
GACGCGCTGCTTAACAAGGAGAACACGGGAGACCAGACCGGCACCTACGC
CAGCGAGCTAAGCAGCAATGGGCCATCAGAGAACACTTTAGAGCAAGAGA
AATATACAACCTTGACTGTTGTCATAGGCATCACTCCTTCTTCTTTAGCC
TCACCTCCATCCTCGTCGCCACCGTTGTTGGTGGCCGAGGTCATCTCCCT
AACCCAAGCCGGGGGGAACGGGTGCTGCAACCGCGACGACCCCTTCCTCC
TCCTCTTCTCCCAGAGGCAATCCCAGGCCCACCCTCCCCTCCCCACCCTC
CTTAAACAACAAAAGGATCTACCCGACTTGTCAGAGGTTCACTGGCCGCT
TTTGGGACTACCTCCCCTGGTGGTGGACGTTCAAAATCCTCCTTTCCTGT
GGCCGAGGGACTACGAGCGTGCCGCTGGCCCGTCGCGAGAGGTGGAGGCC
AGGTGGTGGGATCCGCAGCATGGACAGTTGAATCTAATTTTTGGGAGGGG
GGTACATGTGGGAAATGCATTGGAGGTGGTAGCGGCGGAGACGAGGCGGA
GGTTGACGACAACGACGGCGGCGGCGGCGGACGGGAAGACTGGAGGGAGG
GATGGCCTTCAGGAAGGACGGATGGAGGGGTTGGAGTCAGTTTTTGTGAC
TGTACGACATGATTTCGGAATTATGGCGCGATTGCTTGCGGACGGATATA
GGATTCATCATGCGGCGGGTGGAGGGAAACAAATTGTTCTGTTGAGAAGA
TTTGTCAAGGTCGAGGTGCCAACGGCGGGGACGCACATATGTAGAAGCAA
GGTGATCTTGTTCCGAAGAAGAAAGCGAGGACGAGAAGGAATGGACAGGG
AAACAATACAGTCGGTACCAGAAGTACTAGACGGGGGGGAGGAGGATGGA
GGGAGGGAGGGTGAGGGCAAGGTGGAGGTTTTCCTTTTCCGTCGACGTGC
GAAGGGAATATACAAGATGCCGGGTGGGCATGTGGAATTAAAGGAGCTGG
CTGAGGAAGCGGCGGTGAGAGAGGTGTGGGAAGAGACAGGCTATGCGTGC
AGGGTGGTGGGGATGGTGGCATTGACGGAACGAAAGGATGTCGGGAAGAA
GTGGGGTTGTTCTCAGTTGATGTTTACCTTTGCGGCCGAGTGGGTGCAGA
GCGAGATGAGGCTGGATGACGCGATCAGCCGGGAGGGGATGTGGTTTCTG
TTGGATGAGGTGGATGCGATGGTTGCGGAGAATAGCGTGGCTTTGGACCC
TCCGTTGAAGATGGTCTGGCCGGCATTCAGGGCAGGAGGGAGGGCGCTAG
CCATGTCTTCTACGATGCCTGCGGCAGCAGACGTAGGGCCTGCTGCCTGG
TTTTGTCATCACCCGCATTGCATTGATTCGGGATATGAAACGAGGAAGAG
GTGCTATATGACCGGTGGAGAGGGAAAAAGAGGGAGAGAATGCAAGGTGC
AATCGGGGCAGCAAGTGCAGTTGCAGCAGGGAGGGGGGCAGATGCCGGGG
GGAATCGGGAAGACGGAAGGAAGTGGATCGACGGCATCGACATCGTCTTT
GTCGTCAACCTCTTCTTCGTCCTCGTCCTTGATTGCGTCATGCCACAGGG
GAAATCTGAGCGAGGGTTGTAATTCGTTGATTAATTGCTTAGAGGGCGGT
CATGGGAATGACTAGGAGGAACGCAGTTCAAGTTAGCTTGAGGGGATGAA
AGTCATGACACGTCAAAAAAAGGATTTCCGGTGTTGTCTTCTGCTGCAGC
TGGTGGTAGGCGGACAAAAAGCAATGCAATGGTAATTATGTAATTTGATT
GAAGGGGGAAAACAAATGTACAATAAATGGGATTCGAAAACGTGTTGAAA
CATTTATTTGTGGGATTTTAATTTTAAATTGGCCCCCAATTTCTTCTATC
ATTAGAACAACTCACCTATTGGTGGAATATCAACAGTGCAGAGTCAAAAA
CGTCTATCTTCGATGGCGCGGACATATCTTGGAGATTTCTCGTGTTATTT
CTTTGCTAA

protein sequence of jgi.p|Nanoce1779_2|441141

>mRNA_4712-protein ID=mRNA_4712-protein|Name=jgi.p|Nanoce1779_2|441141|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp
MATVPTASEQEQERHSSRPGFVALHIETLFSWLDCISNSNNSKRIVVPRF
GAEQVLAYLREAENNRGEPLTLIIVAPGEAAKRLLVGVRGDPSLASLLEG
LHIITTATVNEEETLVDLRQGIDNLLGKKGKNDDNDRSASISASVCWPLL
DALLNKENTGDQTGTYASELSSNGPSENTLEQEKYTTLTVVIGITPSSLA
SPPSSSPPLLVAEVISLTQAGGNGCCNRDDPFLLLFSQRQSQAHPPLPTL
LKQQKDLPDLSEVHWPLLGLPPLVVDVQNPPFLWPRDYERAAGPSREVEA
RWWDPQHGQLNLIFGRGVHVGNALEVVAAETRRRLTTTTAAAADGKTGGR
DGLQEGRMEGLESVFVTVRHDFGIMARLLADGYRIHHAAGGGKQIVLLRR
FVKVEVPTAGTHICRSKVILFRRRKRGREGMDRETIQSVPEVLDGGEEDG
GREGEGKVEVFLFRRRAKGIYKMPGGHVELKELAEEAAVREVWEETGYAC
RVVGMVALTERKDVGKKWGCSQLMFTFAAEWVQSEMRLDDAISREGMWFL
LDEVDAMVAENSVALDPPLKMVWPAFRAGGRALAMSSTMPAAADVGPAAW
FCHHPHCIDSGYETRKRCYMTGGEGKRGRECKVQSGQQVQLQQGGGQMPG
GIGKTEGSGSTASTSSLSSTSSSSSSLIASCHRGNLSEGCNSLINCLEGG
HGND*

mRNA from alignment at scaffold_9:459647..462355-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4712 ID=mRNA_4712|Name=jgi.p|Nanoce1779_2|441141|organism=Nannochloropsis oceanica|type=mRNA|length=2709bp|location=Sequence derived from alignment at scaffold_9:459647..462355- (Nannochloropsis oceanica)
GGGGCTTTTACCATCATGATGATATCATTATGATCATGCATCATCTCGTG
CACTCCTCCATCTTCCCTAACTTTCCGCATCCACTCACGCCTATACCTAC
TGACTTTATCATAGGTGTTCGTGCTTTGTTCGTCTTTCTTGGATCTGGAG
TCTCTTTCGGTTTAGTTTGCGATCTTGCTGCGGCAACGCCTGATTGAGAC
GCAAGAAGGGAGAAGAAGAACATACGTCCACACAAAAAGCCCTCGCAACC
ATGGCAACGGTACCCACAGCCTCGGAGCAGGAGCAGGAGCGACATAGCTC
AAGGCCAGGCTTTGTAGCTCTGCATATAGAAACACTATTTTCCTGGCTTG
ATTGCATCAGCAACAGCAACAACAGCAAGAGGATCGTTGTGCCCCGTTTC
GGGGCCGAGCAAGTCCTGGCCTACCTCAGGGAGGCTGAAAACAACAGGGG
CGAGCCATTGACTCTCATCATTGTGGCCCCCGGAGAAGCGGCTAAAAGGC
TCTTGGTGGGCGTACGAGGGGACCCAAGCCTGGCCTCACTGCTCGAGGGC
CTGCATATCATCACCACTGCGACCGTGAACGAGGAAGAGACGTTGGTAGA
CCTTCGGCAAGGGATAGATAATTTGCTGGGAAAGAAAGGCAAGAACGACG
ACAATGACAGGAGCGCTTCAATTTCGGCGTCTGTGTGCTGGCCTTTACTT
GACGCGCTGCTTAACAAGGAGAACACGGGAGACCAGACCGGCACCTACGC
CAGCGAGCTAAGCAGCAATGGGCCATCAGAGAACACTTTAGAGCAAGAGA
AATATACAACCTTGACTGTTGTCATAGGCATCACTCCTTCTTCTTTAGCC
TCACCTCCATCCTCGTCGCCACCGTTGTTGGTGGCCGAGGTCATCTCCCT
AACCCAAGCCGGGGGGAACGGGTGCTGCAACCGCGACGACCCCTTCCTCC
TCCTCTTCTCCCAGAGGCAATCCCAGGCCCACCCTCCCCTCCCCACCCTC
CTTAAACAACAAAAGGATCTACCCGACTTGTCAGAGGTTCACTGGCCGCT
TTTGGGACTACCTCCCCTGGTGGTGGACGTTCAAAATCCTCCTTTCCTGT
GGCCGAGGGACTACGAGCGTGCCGCTGGCCCGTCGCGAGAGGTGGAGGCC
AGGTGGTGGGATCCGCAGCATGGACAGTTGAATCTAATTTTTGGGAGGGG
GGTACATGTGGGAAATGCATTGGAGGTGGTAGCGGCGGAGACGAGGCGGA
GGTTGACGACAACGACGGCGGCGGCGGCGGACGGGAAGACTGGAGGGAGG
GATGGCCTTCAGGAAGGACGGATGGAGGGGTTGGAGTCAGTTTTTGTGAC
TGTACGACATGATTTCGGAATTATGGCGCGATTGCTTGCGGACGGATATA
GGATTCATCATGCGGCGGGTGGAGGGAAACAAATTGTTCTGTTGAGAAGA
TTTGTCAAGGTCGAGGTGCCAACGGCGGGGACGCACATATGTAGAAGCAA
GGTGATCTTGTTCCGAAGAAGAAAGCGAGGACGAGAAGGAATGGACAGGG
AAACAATACAGTCGGTACCAGAAGTACTAGACGGGGGGGAGGAGGATGGA
GGGAGGGAGGGTGAGGGCAAGGTGGAGGTTTTCCTTTTCCGTCGACGTGC
GAAGGGAATATACAAGATGCCGGGTGGGCATGTGGAATTAAAGGAGCTGG
CTGAGGAAGCGGCGGTGAGAGAGGTGTGGGAAGAGACAGGCTATGCGTGC
AGGGTGGTGGGGATGGTGGCATTGACGGAACGAAAGGATGTCGGGAAGAA
GTGGGGTTGTTCTCAGTTGATGTTTACCTTTGCGGCCGAGTGGGTGCAGA
GCGAGATGAGGCTGGATGACGCGATCAGCCGGGAGGGGATGTGGTTTCTG
TTGGATGAGGTGGATGCGATGGTTGCGGAGAATAGCGTGGCTTTGGACCC
TCCGTTGAAGATGGTCTGGCCGGCATTCAGGGCAGGAGGGAGGGCGCTAG
CCATGTCTTCTACGATGCCTGCGGCAGCAGACGTAGGGCCTGCTGCCTGG
TTTTGTCATCACCCGCATTGCATTGATTCGGGATATGAAACGAGGAAGAG
GTGCTATATGACCGGTGGAGAGGGAAAAAGAGGGAGAGAATGCAAGGTGC
AATCGGGGCAGCAAGTGCAGTTGCAGCAGGGAGGGGGGCAGATGCCGGGG
GGAATCGGGAAGACGGAAGGAAGTGGATCGACGGCATCGACATCGTCTTT
GTCGTCAACCTCTTCTTCGTCCTCGTCCTTGATTGCGTCATGCCACAGGG
GAAATCTGAGCGAGGGTTGTAATTCGTTGATTAATTGCTTAGAGGGCGGT
CATGGGAATGACTAGGAGGAACGCAGTTCAAGTTAGCTTGAGGGGATGAA
AGTCATGACACGTCAAAAAAAGGATTTCCGGTGTTGTCTTCTGCTGCAGC
TGGTGGTAGGCGGACAAAAAGCAATGCAATGGTAATTATGTAATTTGATT
GAAGGGGGAAAACAAATGTACAATAAATGGGATTCGAAAACGTGTTGAAA
CATTTATTTGTGGGATTTTAATTTTAAATTGGCCCCCAATTTCTTCTATC
ATTAGAACAACTCACCTATTGGTGGAATATCAACAGTGCAGAGTCAAAAA
CGTCTATCTTCGATGGCGCGGACATATCTTGGAGATTTCTCGTGTTATTT
CTTTGCTAA

Coding sequence (CDS) from alignment at scaffold_9:459647..462355-

>mRNA_4712 ID=mRNA_4712|Name=jgi.p|Nanoce1779_2|441141|organism=Nannochloropsis oceanica|type=CDS|length=2115bp|location=Sequence derived from alignment at scaffold_9:459647..462355- (Nannochloropsis oceanica)
ATGGCAACGGTACCCACAGCCTCGGAGCAGGAGCAGGAGCGACATAGCTC
AAGGCCAGGCTTTGTAGCTCTGCATATAGAAACACTATTTTCCTGGCTTG
ATTGCATCAGCAACAGCAACAACAGCAAGAGGATCGTTGTGCCCCGTTTC
GGGGCCGAGCAAGTCCTGGCCTACCTCAGGGAGGCTGAAAACAACAGGGG
CGAGCCATTGACTCTCATCATTGTGGCCCCCGGAGAAGCGGCTAAAAGGC
TCTTGGTGGGCGTACGAGGGGACCCAAGCCTGGCCTCACTGCTCGAGGGC
CTGCATATCATCACCACTGCGACCGTGAACGAGGAAGAGACGTTGGTAGA
CCTTCGGCAAGGGATAGATAATTTGCTGGGAAAGAAAGGCAAGAACGACG
ACAATGACAGGAGCGCTTCAATTTCGGCGTCTGTGTGCTGGCCTTTACTT
GACGCGCTGCTTAACAAGGAGAACACGGGAGACCAGACCGGCACCTACGC
CAGCGAGCTAAGCAGCAATGGGCCATCAGAGAACACTTTAGAGCAAGAGA
AATATACAACCTTGACTGTTGTCATAGGCATCACTCCTTCTTCTTTAGCC
TCACCTCCATCCTCGTCGCCACCGTTGTTGGTGGCCGAGGTCATCTCCCT
AACCCAAGCCGGGGGGAACGGGTGCTGCAACCGCGACGACCCCTTCCTCC
TCCTCTTCTCCCAGAGGCAATCCCAGGCCCACCCTCCCCTCCCCACCCTC
CTTAAACAACAAAAGGATCTACCCGACTTGTCAGAGGTTCACTGGCCGCT
TTTGGGACTACCTCCCCTGGTGGTGGACGTTCAAAATCCTCCTTTCCTGT
GGCCGAGGGACTACGAGCGTGCCGCTGGCCCGTCGCGAGAGGTGGAGGCC
AGGTGGTGGGATCCGCAGCATGGACAGTTGAATCTAATTTTTGGGAGGGG
GGTACATGTGGGAAATGCATTGGAGGTGGTAGCGGCGGAGACGAGGCGGA
GGTTGACGACAACGACGGCGGCGGCGGCGGACGGGAAGACTGGAGGGAGG
GATGGCCTTCAGGAAGGACGGATGGAGGGGTTGGAGTCAGTTTTTGTGAC
TGTACGACATGATTTCGGAATTATGGCGCGATTGCTTGCGGACGGATATA
GGATTCATCATGCGGCGGGTGGAGGGAAACAAATTGTTCTGTTGAGAAGA
TTTGTCAAGGTCGAGGTGCCAACGGCGGGGACGCACATATGTAGAAGCAA
GGTGATCTTGTTCCGAAGAAGAAAGCGAGGACGAGAAGGAATGGACAGGG
AAACAATACAGTCGGTACCAGAAGTACTAGACGGGGGGGAGGAGGATGGA
GGGAGGGAGGGTGAGGGCAAGGTGGAGGTTTTCCTTTTCCGTCGACGTGC
GAAGGGAATATACAAGATGCCGGGTGGGCATGTGGAATTAAAGGAGCTGG
CTGAGGAAGCGGCGGTGAGAGAGGTGTGGGAAGAGACAGGCTATGCGTGC
AGGGTGGTGGGGATGGTGGCATTGACGGAACGAAAGGATGTCGGGAAGAA
GTGGGGTTGTTCTCAGTTGATGTTTACCTTTGCGGCCGAGTGGGTGCAGA
GCGAGATGAGGCTGGATGACGCGATCAGCCGGGAGGGGATGTGGTTTCTG
TTGGATGAGGTGGATGCGATGGTTGCGGAGAATAGCGTGGCTTTGGACCC
TCCGTTGAAGATGGTCTGGCCGGCATTCAGGGCAGGAGGGAGGGCGCTAG
CCATGTCTTCTACGATGCCTGCGGCAGCAGACGTAGGGCCTGCTGCCTGG
TTTTGTCATCACCCGCATTGCATTGATTCGGGATATGAAACGAGGAAGAG
GTGCTATATGACCGGTGGAGAGGGAAAAAGAGGGAGAGAATGCAAGGTGC
AATCGGGGCAGCAAGTGCAGTTGCAGCAGGGAGGGGGGCAGATGCCGGGG
GGAATCGGGAAGACGGAAGGAAGTGGATCGACGGCATCGACATCGTCTTT
GTCGTCAACCTCTTCTTCGTCCTCGTCCTTGATTGCGTCATGCCACAGGG
GAAATCTGAGCGAGGGTTGTAATTCGTTGATTAATTGCTTAGAGGGCGGT
CATGGGAATGACTAG

Synonyms

Publications