jgi.p|Nanoce1779_2|624808, mRNA_471 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624808
Unique Name	mRNA_471
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2749
Alignment location	scaffold_3:1142248..1145141 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	624894
Track	FilteredModels2
ProteinId	624808

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1142248..1145141 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624808	gene_471	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624808	mRNA_471-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_471	CDS_471	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1142248..1145141-
coding sequence from alignment at scaffold_3:1142248..1145141-

mRNA sequence

>mRNA_471 ID=mRNA_471|Name=jgi.p|Nanoce1779_2|624808|organism=Nannochloropsis oceanica|type=mRNA|length=2749bp
GCGGCGATTATGGCCCTATACAAGGGGATTACCACGCTGGTGGACCAGGA
GAACGCGGCAGCGAGTGCAAAAGGGGGTGAGGGGACCGCGTCAGCCTCGG
CTGTGGCGAGCAAGAAGAAGAGAAAGCCCAAGATGAGCCTGGGGGAAAGC
TTTAAGTTCCTGCTGACCAACCGGTATTTGGCGTGTATGGCGATCCTGGT
GGTGTCGTATGGCCTGGCCATCAATTTCACCGAGGTCATGTGGAAGAGCC
AAGTGAAGCTCCTCTACCAAGACAAGCGAAAGTACCAGCAGTTCATGGGC
AACTATTCCACGATGATGGGAGCCACCACCTTCGTCGTCATCTTCTTTGG
GTCGCAAATCGTCAAGACTTTTGGAATGAAAGTTGGAGCCTTGACCACTC
CCATCATGCTTGGCTTGTTGGCTGCACCCTTTTTCGGGTACATTATATTT
GGTGGAATTTCGAGCAAGGGAGTATCGTCACCCAAGGCCCTGCAGACAGC
GGTGTGGGTTGGATTGGTCCAGAATATCTTGTCGAAATCGATTAAGTATG
CTTTGTTTGATCCCACCAAGGAGATGGCTTACATCCCCTTGGGGCAGGAG
GAGAAGACCAAGGGCAAGGCCGCGATTGATGTGCTGGCGGCGCGTATCGG
GAAGAGTGGTGGGGCGCTGTTACAGCAGGCGATTGTCCTCTTCTTTGGGA
ATATCATTGATGGGGCCCCAGTGGTGGTGGGCCTGTTTTATATCGTCATT
TTTGCCTGGCTGTTCGCCGCCAATTCATTGGGCAACCAATTCGAAGAGGT
GTCCAAAAATAAGTAAACATATAATTCTTAGGTTTAAAGGAGAGAGACGA
AGTTAGGGGAAGGGATGCGAGAAGAAAGGCGAAGCACGCAATAGGAACGT
ACGCGCCCACGCGTCACAAACGTGCGGTGTGCAAAGCAGCAAAAAACACA
ACCAATGCCTCTATACATCAATCGACCCTTAACCGATCGACCGACACAAA
GAAACATGCGCGATATAAGGAATAAGCGTAGGGTTGTTCTTGTTTACAAT
TTTCTCTTGATGTTAGTCTCCATGTAATTTTCTTAGCTTAGACTTCCACT
CAAGTTAACATCGTACCACACGGTTCACACAAGCCAAATTTAAGCTGCTT
ACGACGAGCTGGGCAAGAACGCACATTCCACAGAACTGTTTTTTTCCGGC
GGATGATCCTGCTTAGCCCTCTCAAGTCACGGAAGCGATGCCTGCCCAAC
TCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCGACGACCGAGACCC
GGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGCTCCTGGCCTTGAT
ATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGCCCTATGACACCCA
AGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAAAAAACGCCCCGGC
TACTCCCTCGGCAACATACCCATTAACACGCTCGGCCGCTCACACCGCTC
CCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGATCTCACCCGCGACA
TACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCTCCCTGGCGGTGGC
GACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAGTGGGGGCAGAAGG
CGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGCAGTGGCTGGCACG
ACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCGGGAAAATTCGGCG
CCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATGCTAAAGACCATGA
CGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTCTGCCTCCCCGATG
ACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAGAGGAAGAGGGCTC
ACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGAGATTGCCGTGGGA
CAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCCCTCGGTGGGGAAG
GAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTTGGCAAGGCTGGAA
GACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGATTCCCAAGCTGCT
GCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCAGACGGGTTGTGGG
AGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCTCGAAGATTACCTC
GATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGGACGGTATGATTGC
TCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTTGTGGAGGGCAGGC
CGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCGATCCTCGACGAGT
ATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAGTAGGAGAGGGAGG
GAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTCGCGGAACAGTTGA
AGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGCGTATGATATTGCT
TCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGGGAGGCCCGACTGT
GGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATTGCGTGGGCATATG
AGCACGTCAAAGCAACCACTACATAGAGTGAAGGGAAAAAGAGGGTGATG
AGAGACAGAGGAAGAAAAAGATTTAGTACAACAAATGAAGGGATGAAGGA
ACATGTGTATGAACCATAGCGCAAGAAAAGAGGCGAATGGAACGGGGGG

protein sequence of jgi.p|Nanoce1779_2|624808

>mRNA_471-protein ID=mRNA_471-protein|Name=jgi.p|Nanoce1779_2|624808|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPAQLLPPQQPTSRLRRRPRPGWQQQPTTIATLLLALIYSAHAYIPLPRR
PMTPKPSSPHFSSGPTKKRPGYSLGNIPINTLGRSHRSPECLARIRLALD
LTRDILGIPVDYRLALLPGGGDTGAYEASLWSLVGAEGVPVEALVWDAFS
SGWHDDLVNQLRIKKVRENSAPYGELPDLSRVNAKDHDVCFVWNGTTSGV
CLPDDGAPWIPSPGPGRGRGLTVCDATSACFCMRLPWDKLDVTTFSWQKA
LGGEGAHGMMVLSPRALARLEDNAQSGLLSSRQIPKLLRLAGDVKTGLVP
DGLWEGSTINTPSMLCLEDYLDALSWVQREGGLDGMIARSRANLAAVEEF
VEGRPWLSFLAKDKRTRSSTSICLEVGGWGGHVVGEGGREGGNGYSKKKV
AEQLKTMVRLLEEEDLAYDIASYRDAPSGLRVWGGPTVEREDVERLMPWI
AWAYEHVKATTT*

mRNA from alignment at scaffold_3:1142248..1145141-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_471 ID=mRNA_471|Name=jgi.p|Nanoce1779_2|624808|organism=Nannochloropsis oceanica|type=mRNA|length=2894bp|location=Sequence derived from alignment at scaffold_3:1142248..1145141- (Nannochloropsis oceanica)
GCGGCGATTATGGCCCTATACAAGGGGATTACCACGCTGGTGGACCAGGA
GAACGCGGCAGCGAGTGCAAAAGGGGGTGAGGGGACCGCGTCAGCCTCGG
CTGTGGCGAGCAAGAAGAAGAGAAAGCCCAAGATGAGCCTGGGGGAAAGC
TTTAAGTTCCTGCTGACCAACCGGTATTTGGCGTGTATGGCGATCCTGGT
GGTGTCGTATGGCCTGGCCATCAATTTCACCGAGGTGAGGAAGGAAGGAG
GGAGGGAGGGGAGGAAAGGATGGACACGTTTGGTTGTTGTTGTAATTTAT
AGAAAAGAAACATTCCTTCTCACACACTGACACACCCACCCCTCCCACCC
ACTTTCCCTCCTTCCCTCCCCTCCCGCAGGTCATGTGGAAGAGCCAAGTG
AAGCTCCTCTACCAAGACAAGCGAAAGTACCAGCAGTTCATGGGCAACTA
TTCCACGATGATGGGAGCCACCACCTTCGTCGTCATCTTCTTTGGGTCGC
AAATCGTCAAGACTTTTGGAATGAAAGTTGGAGCCTTGACCACTCCCATC
ATGCTTGGCTTGTTGGCTGCACCCTTTTTCGGGTACATTATATTTGGTGG
AATTTCGAGCAAGGGAGTATCGTCACCCAAGGCCCTGCAGACAGCGGTGT
GGGTTGGATTGGTCCAGAATATCTTGTCGAAATCGATTAAGTATGCTTTG
TTTGATCCCACCAAGGAGATGGCTTACATCCCCTTGGGGCAGGAGGAGAA
GACCAAGGGCAAGGCCGCGATTGATGTGCTGGCGGCGCGTATCGGGAAGA
GTGGTGGGGCGCTGTTACAGCAGGCGATTGTCCTCTTCTTTGGGAATATC
ATTGATGGGGCCCCAGTGGTGGTGGGCCTGTTTTATATCGTCATTTTTGC
CTGGCTGTTCGCCGCCAATTCATTGGGCAACCAATTCGAAGAGGTGTCCA
AAAATAAGTAAACATATAATTCTTAGGTTTAAAGGAGAGAGACGAAGTTA
GGGGAAGGGATGCGAGAAGAAAGGCGAAGCACGCAATAGGAACGTACGCG
CCCACGCGTCACAAACGTGCGGTGTGCAAAGCAGCAAAAAACACAACCAA
TGCCTCTATACATCAATCGACCCTTAACCGATCGACCGACACAAAGAAAC
ATGCGCGATATAAGGAATAAGCGTAGGGTTGTTCTTGTTTACAATTTTCT
CTTGATGTTAGTCTCCATGTAATTTTCTTAGCTTAGACTTCCACTCAAGT
TAACATCGTACCACACGGTTCACACAAGCCAAATTTAAGCTGCTTACGAC
GAGCTGGGCAAGAACGCACATTCCACAGAACTGTTTTTTTCCGGCGGATG
ATCCTGCTTAGCCCTCTCAAGTCACGGAAGCGATGCCTGCCCAACTCTTG
CCACCGCAGCAACCCACGTCACGTCTCCGTCGACGACCGAGACCCGGGTG
GCAGCAGCAGCCCACGACGATCGCGACTTTGCTCCTGGCCTTGATATATT
CCGCGCACGCGTACATCCCTCTCCCACGCCGCCCTATGACACCCAAGCCC
TCTAGCCCGCACTTCAGTTCCGGACCCACCAAAAAACGCCCCGGCTACTC
CCTCGGCAACATACCCATTAACACGCTCGGCCGCTCACACCGCTCCCCCG
AGTGCCTGGCACGTATTCGATTGGCACTTGATCTCACCCGCGACATACTT
GGCATTCCCGTGGACTATCGCCTGGCCTTGCTCCCTGGCGGTGGCGACAC
GGGTGCCTATGAAGCATCGCTGTGGTCATTAGTGGGGGCAGAAGGCGTGC
CTGTTGAAGCCTTGGTATGGGATGCATTTAGCAGTGGCTGGCACGACGAC
TTGGTCAACCAACTTCGCATAAAAAAGGTCCGGGAAAATTCGGCGCCTTA
CGGTGAGCTCCCGGATTTGTCAAGGGTAAATGCTAAAGACCATGACGTGT
GCTTTGTTTGGAATGGCACCACCAGCGGGGTCTGCCTCCCCGATGACGGT
GCGCCTTGGATTCCTTCACCAGGTCCTGGAAGAGGAAGAGGGCTCACGGT
ATGTGATGCGACCTCGGCCTGTTTCTGCATGAGATTGCCGTGGGACAAGT
TAGATGTGACGACTTTCTCCTGGCAAAAAGCCCTCGGTGGGGAAGGAGCA
CATGGAATGATGGTCCTGTCACCTCGGGCGTTGGCAAGGCTGGAAGACAA
TGCACAGTCTGGGCTGCTGTCATCGCGTCAGATTCCCAAGCTGCTGCGCT
TGGCAGGGGACGTGAAAACAGGCCTGGTCCCAGACGGGTTGTGGGAGGGG
TCAACCATTAATACGCCTTCTATGCTGTGTCTCGAAGATTACCTCGATGC
GTTAAGCTGGGTACAGAGGGAGGGAGGCCTGGACGGTATGATTGCTCGGA
GTCGGGCAAATTTAGCAGCGGTGGAGGAGTTTGTGGAGGGCAGGCCGTGG
TTATCGTTTTTGGCGAAGGACAAGCGGACGCGATCCTCGACGAGTATTTG
TTTGGAGGTGGGGGGATGGGGGGGTCACGTAGTAGGAGAGGGAGGGAGGG
AAGGAGGGAATGGTTACAGTAAGAAGAAGGTCGCGGAACAGTTGAAGACG
ATGGTTAGGTTGTTGGAGGAGGAGGACTTGGCGTATGATATTGCTTCGTA
TCGAGACGCCCCTTCGGGGTTAAGGGTTTGGGGAGGCCCGACTGTGGAGA
GGGAGGATGTCGAAAGGTTGATGCCTTGGATTGCGTGGGCATATGAGCAC
GTCAAAGCAACCACTACATAGAGTGAAGGGAAAAAGAGGGTGATGAGAGA
CAGAGGAAGAAAAAGATTTAGTACAACAAATGAAGGGATGAAGGAACATG
TGTATGAACCATAGCGCAAGAAAAGAGGCGAATGGAACGGGGGG

Coding sequence (CDS) from alignment at scaffold_3:1142248..1145141-

>mRNA_471 ID=mRNA_471|Name=jgi.p|Nanoce1779_2|624808|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_3:1142248..1145141- (Nannochloropsis oceanica)
ATGCCTGCCCAACTCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCG
ACGACCGAGACCCGGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGC
TCCTGGCCTTGATATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGC
CCTATGACACCCAAGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAA
AAAACGCCCCGGCTACTCCCTCGGCAACATACCCATTAACACGCTCGGCC
GCTCACACCGCTCCCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGAT
CTCACCCGCGACATACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCT
CCCTGGCGGTGGCGACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAG
TGGGGGCAGAAGGCGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGC
AGTGGCTGGCACGACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCG
GGAAAATTCGGCGCCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATG
CTAAAGACCATGACGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTC
TGCCTCCCCGATGACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAG
AGGAAGAGGGCTCACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGA
GATTGCCGTGGGACAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCC
CTCGGTGGGGAAGGAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTT
GGCAAGGCTGGAAGACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGA
TTCCCAAGCTGCTGCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCA
GACGGGTTGTGGGAGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCT
CGAAGATTACCTCGATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGG
ACGGTATGATTGCTCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTT
GTGGAGGGCAGGCCGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCG
ATCCTCGACGAGTATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAG
TAGGAGAGGGAGGGAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTC
GCGGAACAGTTGAAGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGC
GTATGATATTGCTTCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGG
GAGGCCCGACTGTGGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATT
GCGTGGGCATATGAGCACGTCAAAGCAACCACTACATAG

Synonyms

Publications