jgi.p|Nanoce1779_2|587602, mRNA_4708 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587602
Unique NamemRNA_4708
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1027
Alignment locationscaffold_9:447200..448297 +

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Properties
Property NameValue
TranscriptId587688
TrackFilteredModels2
ProteinId587602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:447200..448297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587602gene_4708Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587602mRNA_4708-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4708CDS_4708Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4708 ID=mRNA_4708|Name=jgi.p|Nanoce1779_2|587602|organism=Nannochloropsis oceanica|type=mRNA|length=1027bp
ACAGATAAATTACGCCAGTATCGTCGTGGTCGCCCTGGCGCGTTTGCGGA
TCGCCAGGGTAGTTGTCCGAACAAACCAAGCTGAAACCGACCTCCCCATC
CTACCTTCCCTCCACAATTTTTGGCCGGAAGCGCCAGAGCACACACGACA
TGGAGGGCCAGGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGAT
AATTTGATCATCAATATGGTACGTCTTAAACGCATCCCTCGAAAATGCCC
TTTCTAACCCCCCGAGCTACGCACACCCCCATTATAATAGTCTCGCATCA
GAGCCATCGCCAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAGGGTGCC
GTGGCCACCATCAGTACGTTCTAGCTTCCATTCCTTCATTCTCATGCGTG
CCATTGCGATGGCCAACCCACCATTCCCGTTTTTTAATCATCACCCCAAA
TCTAGGTGCGGCCACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCG
CTAATGAAGCAAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGC
AGTGGCAGAACCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACC
CGATGATATCCAAGCATTTATTCTCAAAAACGATGAGCTCCAATTTCTTC
GAGACCGCGTTAAGGAAACGCAAGAAAGCGGATACCTAGAAAGCTACCGA
GCCCGAGTGCGGGAAGGGAATAAAGCCTCCAGCAAAACAAAATTGAAGGC
ACTTGTGGGTGGGGCCTTAGGAGGGGAGGGAAGACACGAAAATGAGGAAT
GTAAAGACGAAGACGAAGACGACACTGTCGAGTCCGCGGCTGCTGCTTTG
GTGGCGACAGTGGATGGTGGCGGTGGTAGGGCGGGAGGAGGATCTGGAGC
AGGGGAGGCAGCAGCAGCGGCACCGGAAAAAGCCGAAAGCATGGTGCTGG
ACGAGAATTATGGAGGCGAAGACTACTAAGGACATATGAGAGAAGGGAGG
CAAAAAGCAATATACATAGAAATCAGC
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protein sequence of jgi.p|Nanoce1779_2|587602

>mRNA_4708-protein ID=mRNA_4708-protein|Name=jgi.p|Nanoce1779_2|587602|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPFLTPRATHTPIIIVSHQSHRQARPGRGRVEQGCRGHHQYVLASIPSFS
CVPLRWPTHHSRFLIITPNLGAATRCLMEKLLLGAANEARVKAQSKSRRS
CGSGRTKPMSVEGVLTVTPDDIQAFILKNDELQFLRDRVKETQESGYLES
YRARVREGNKASSKTKLKALVGGALGGEGRHENEECKDEDEDDTVESAAA
ALVATVDGGGGRAGGGSGAGEAAAAAPEKAESMVLDENYGGEDY*
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mRNA from alignment at scaffold_9:447200..448297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4708 ID=mRNA_4708|Name=jgi.p|Nanoce1779_2|587602|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp|location=Sequence derived from alignment at scaffold_9:447200..448297+ (Nannochloropsis oceanica)
ACAGATAAATTACGCCAGTATCGTCGTGGTCGCCCTGGCGCGTTTGCGGA
TCGCCAGGGTAGTTGTCCGAACAAACCAAGCTGAAACCGACCTCCCCATC
CTACCTTCCCTCCACAATTTTTGGCCGGAAGCGCCAGAGCACACACGACA
TGGAGGGCCAGGAAGAGGAATGTGGTAGTGAGAAAGAGGGCAGCACGGAT
AATTTGATCATCAATATGGTACGTCTTAAACGCATCCCTCGAAAATGCCC
TTTCTAACCCCCCGAGCTACGCACACCCCCATTATAATAGTCTCGCATCA
GAGCCATCGCCAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAGGGTGCC
GTGGCCACCATCAGTACGTTCTAGCTTCCATTCCTTCATTCTCATGCGTG
CCATTGCGATGGCCAACCCACCATTCCCGTTTTTTAATCATCACCCCAAA
TCTAGGTGCGGCCACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCG
CTAATGAAGCAAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGC
AGTGGCAGAACCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACC
CGATGATATGTAGGTATCCAGAAGGGTGATTGTCACCACCTGCAATGGAC
TTACTTTCCTCTACACAACCCATCTAACAGCCAAGCATTTATTCTCAAAA
ACGATGAGCTCCAATTTCTTCGAGACCGCGTTAAGGAAACGCAAGAAAGC
GGATACCTAGAAAGCTACCGAGCCCGAGTGCGGGAAGGGAATAAAGCCTC
CAGCAAAACAAAATTGAAGGCACTTGTGGGTGGGGCCTTAGGAGGGGAGG
GAAGACACGAAAATGAGGAATGTAAAGACGAAGACGAAGACGACACTGTC
GAGTCCGCGGCTGCTGCTTTGGTGGCGACAGTGGATGGTGGCGGTGGTAG
GGCGGGAGGAGGATCTGGAGCAGGGGAGGCAGCAGCAGCGGCACCGGAAA
AAGCCGAAAGCATGGTGCTGGACGAGAATTATGGAGGCGAAGACTACTAA
GGACATATGAGAGAAGGGAGGCAAAAAGCAATATACATAGAAATCAGC
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Coding sequence (CDS) from alignment at scaffold_9:447200..448297+

>mRNA_4708 ID=mRNA_4708|Name=jgi.p|Nanoce1779_2|587602|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_9:447200..448297+ (Nannochloropsis oceanica)
ATGCCCTTTCTAACCCCCCGAGCTACGCACACCCCCATTATAATAGTCTC
GCATCAGAGCCATCGCCAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAG
GGTGCCGTGGCCACCATCAGTACGTTCTAGCTTCCATTCCTTCATTCTCA
TGCGTGCCATTGCGATGGCCAACCCACCATTCCCGTTTTTTAATCATCAC
CCCAAATCTAGGTGCGGCCACGCGGTGTCTCATGGAAAAGCTACTCCTTG
GCGCCGCTAATGAAGCAAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGC
TGTGGCAGTGGCAGAACCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGT
CACACCCGATGATATCCAAGCATTTATTCTCAAAAACGATGAGCTCCAAT
TTCTTCGAGACCGCGTTAAGGAAACGCAAGAAAGCGGATACCTAGAAAGC
TACCGAGCCCGAGTGCGGGAAGGGAATAAAGCCTCCAGCAAAACAAAATT
GAAGGCACTTGTGGGTGGGGCCTTAGGAGGGGAGGGAAGACACGAAAATG
AGGAATGTAAAGACGAAGACGAAGACGACACTGTCGAGTCCGCGGCTGCT
GCTTTGGTGGCGACAGTGGATGGTGGCGGTGGTAGGGCGGGAGGAGGATC
TGGAGCAGGGGAGGCAGCAGCAGCGGCACCGGAAAAAGCCGAAAGCATGG
TGCTGGACGAGAATTATGGAGGCGAAGACTACTAAATGCCCTTTCTAACC
CCCCGAGCTACGCACACCCCCATTATAATAGTCTCGCATCAGAGCCATCG
CCAAGCAAGACCCGGACGTGGGCGGGTTGAGCAAGGGTGCCGTGGCCACC
ATCAGTACGTTCTAGCTTCCATTCCTTCATTCTCATGCGTGCCATTGCGA
TGGCCAACCCACCATTCCCGTTTTTTAATCATCACCCCAAATCTAGGTGC
GGCCACGCGGTGTCTCATGGAAAAGCTACTCCTTGGCGCCGCTAATGAAG
CAAGGGTCAAGGCTCAGAGCAAAAGCAGACGAAGCTGTGGCAGTGGCAGA
ACCAAGCCCATGTCGGTCGAGGGAGTCTTGACAGTCACACCCGATGATAT
CCAAGCATTTATTCTCAAAAACGATGAGCTCCAATTTCTTCGAGACCGCG
TTAAGGAAACGCAAGAAAGCGGATACCTAGAAAGCTACCGAGCCCGAGTG
CGGGAAGGGAATAAAGCCTCCAGCAAAACAAAATTGAAGGCACTTGTGGG
TGGGGCCTTAGGAGGGGAGGGAAGACACGAAAATGAGGAATGTAAAGACG
AAGACGAAGACGACACTGTCGAGTCCGCGGCTGCTGCTTTGGTGGCGACA
GTGGATGGTGGCGGTGGTAGGGCGGGAGGAGGATCTGGAGCAGGGGAGGC
AGCAGCAGCGGCACCGGAAAAAGCCGAAAGCATGGTGCTGGACGAGAATT
ATGGAGGCGAAGACTACTAA
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Synonyms
Publications