jgi.p|Nanoce1779_2|587578, mRNA_4704 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587578
Unique NamemRNA_4704
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length600
Alignment locationscaffold_9:434143..435258 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587664
TrackFilteredModels2
ProteinId587578
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:434143..435258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587578gene_4704Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587578mRNA_4704-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4704CDS_4704Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4704 ID=mRNA_4704|Name=jgi.p|Nanoce1779_2|587578|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
AGAATCGTTGCTCCTTCCTCCGGTGTCATCTCGTTCTCAGCCATGGCCAA
GCATCATGCCGACCTTGTGATGTGCCGGAAGCAGCCCGGGATCGCCATCG
GCCGCTTGTGTGAAAAGTGCGATGGCAAGTGCGTGATTTGTGATAGTTAC
GTCCGACCCTCCACCTTGGTCCGCATCTGCGACGAATGTAATTACGGCTC
CTATGAAGGTCGGTGCGTTATCTGTGGCGGACCCGGCATCTCTGACGCGT
ATTACTGCCGCGAATGCACCCAAGAAGAGAAGGACCGGGACGGCTGCCCC
AAGATTGTCAACTTGGGAGCATCCAAAACAGATTTATTCTACGAACGCAA
AAAGTATGGATTTAAGCGGCGATGAGGTAGGCGATTGAGCAAGATGTGGT
TGACAATGAAGCAGAAACGAAAGGACCATAGGAACTGTAAATATTGAATG
GGTGAAAACAAGCTTGGCGCTCAAAAGGGGGCTTTGGGCATTTGGCATGT
TTTGGGAGTGGATCTTAGGTAAATTTAGGGTCTTACACTACCTATGCTAG
CCACGCAGACAATAATCTTCAAATCATATCGCATGTAACGAATAGTTGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|587578

>mRNA_4704-protein ID=mRNA_4704-protein|Name=jgi.p|Nanoce1779_2|587578|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MAKHHADLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPSTLVRICDECN
YGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFY
ERKKYGFKRR*
back to top

mRNA from alignment at scaffold_9:434143..435258+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4704 ID=mRNA_4704|Name=jgi.p|Nanoce1779_2|587578|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp|location=Sequence derived from alignment at scaffold_9:434143..435258+ (Nannochloropsis oceanica)
AGAATCGTTGCTCCTTCCTCCGGTGTCATCTCGTTCTCAGCCATGGCCAA
GCATCATGCCGGTACGTAAGTGACACTGGGGATAATGGCGGGGTAATGGG
ATCACTGCTGGAAGGAAGATGTAGGAGCTTGCATTTTAGAGCGTATAGAG
CCATAGCTTAGAGAACCCCCATCTTTTTCCTTTAATATGTATATGTAGAC
CTTGTGATGTGCCGGAAGCAGCCCGGGATCGCCATCGGCCGCTTGTGTGA
AAAGGTAAGTGGAGTGAAGGGAAGCTGGAGCCGGGTCAACTCGCTGCATA
TACATGCATCACCTCAGTGCTAACCTGACCACGCGAATATCTCATCAACC
ACATCATGCAGTGCGATGGCAAGTGCGTGATTTGTGATAGTTACGTCCGA
CCCTCCACCTTGGTCCGCATCTGCGACGAATGTACGCACTCTAATACTTG
TGTGGTTGGTATTGCCTATGACATGCCTCTTACGATTTCGACCAACGCGT
CCTCTTCCACTTCTCTTATCCTTACCACTTTCACCGTTGCCGCTCCAATA
GGTAATTACGGCTCCTATGAAGGTCGGTGCGTTATCTGTGGCGGACCCGG
CATCTCTGACGCGTATTACTGCCGCGAATGCACCCAAGAAGAGAAGGACC
GGGACGGCTGCCCCAAGATTGTCAACTTGGGAGCATCCAAAACAGATTTA
TTCTACGAACGCAAAAAGTATGGATTTAAGCGGTACGTTACTACCCCTTC
GTACGCTATCTATCGTGTTCTTGTGATAAAGATGAAAAAGGCGTTGATTA
AGGCAGGGGAAGGTAATAAGAGTGAGTGTGCGTATTTTATGTGTTGCTCC
GAAGTTCTGATTTCCCCCCTCGTATTGTTCACAGGCGATGAGGTAGGCGA
TTGAGCAAGATGTGGTTGACAATGAAGCAGAAACGAAAGGACCATAGGAA
CTGTAAATATTGAATGGGTGAAAACAAGCTTGGCGCTCAAAAGGGGGCTT
TGGGCATTTGGCATGTTTTGGGAGTGGATCTTAGGTAAATTTAGGGTCTT
ACACTACCTATGCTAGCCACGCAGACAATAATCTTCAAATCATATCGCAT
GTAACGAATAGTTGAC
back to top

Coding sequence (CDS) from alignment at scaffold_9:434143..435258+

>mRNA_4704 ID=mRNA_4704|Name=jgi.p|Nanoce1779_2|587578|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_9:434143..435258+ (Nannochloropsis oceanica)
ATGGCCAAGCATCATGCCGACCTTGTGATGTGCCGGAAGCAGCCCGGGAT
CGCCATCGGCCGCTTGTGTGAAAAGTGCGATGGCAAGTGCGTGATTTGTG
ATAGTTACGTCCGACCCTCCACCTTGGTCCGCATCTGCGACGAATGTAAT
TACGGCTCCTATGAAGGTCGGTGCGTTATCTGTGGCGGACCCGGCATCTC
TGACGCGTATTACTGCCGCGAATGCACCCAAGAAGAGAAGGACCGGGACG
GCTGCCCCAAGATTGTCAACTTGGGAGCATCCAAAACAGATTTATTCTAC
GAACGCAAAAAGTATGGATTTAAGCGGCGATGAATGGCCAAGCATCATGC
CGACCTTGTGATGTGCCGGAAGCAGCCCGGGATCGCCATCGGCCGCTTGT
GTGAAAAGTGCGATGGCAAGTGCGTGATTTGTGATAGTTACGTCCGACCC
TCCACCTTGGTCCGCATCTGCGACGAATGTAATTACGGCTCCTATGAAGG
TCGGTGCGTTATCTGTGGCGGACCCGGCATCTCTGACGCGTATTACTGCC
GCGAATGCACCCAAGAAGAGAAGGACCGGGACGGCTGCCCCAAGATTGTC
AACTTGGGAGCATCCAAAACAGATTTATTCTACGAACGCAAAAAGTATGG
ATTTAAGCGGCGATGAATGGCCAAGCATCATGCCGACCTTGTGATGTGCC
GGAAGCAGCCCGGGATCGCCATCGGCCGCTTGTGTGAAAAGTGCGATGGC
AAGTGCGTGATTTGTGATAGTTACGTCCGACCCTCCACCTTGGTCCGCAT
CTGCGACGAATGTAATTACGGCTCCTATGAAGGTCGGTGCGTTATCTGTG
GCGGACCCGGCATCTCTGACGCGTATTACTGCCGCGAATGCACCCAAGAA
GAGAAGGACCGGGACGGCTGCCCCAAGATTGTCAACTTGGGAGCATCCAA
AACAGATTTATTCTACGAACGCAAAAAGTATGGATTTAAGCGGCGATGAA
TGGCCAAGCATCATGCCGACCTTGTGATGTGCCGGAAGCAGCCCGGGATC
GCCATCGGCCGCTTGTGTGAAAAGTGCGATGGCAAGTGCGTGATTTGTGA
TAGTTACGTCCGACCCTCCACCTTGGTCCGCATCTGCGACGAATGTAATT
ACGGCTCCTATGAAGGTCGGTGCGTTATCTGTGGCGGACCCGGCATCTCT
GACGCGTATTACTGCCGCGAATGCACCCAAGAAGAGAAGGACCGGGACGG
CTGCCCCAAGATTGTCAACTTGGGAGCATCCAAAACAGATTTATTCTACG
AACGCAAAAAGTATGGATTTAAGCGGCGATGAATGGCCAAGCATCATGCC
GACCTTGTGATGTGCCGGAAGCAGCCCGGGATCGCCATCGGCCGCTTGTG
TGAAAAGTGCGATGGCAAGTGCGTGATTTGTGATAGTTACGTCCGACCCT
CCACCTTGGTCCGCATCTGCGACGAATGTAATTACGGCTCCTATGAAGGT
CGGTGCGTTATCTGTGGCGGACCCGGCATCTCTGACGCGTATTACTGCCG
CGAATGCACCCAAGAAGAGAAGGACCGGGACGGCTGCCCCAAGATTGTCA
ACTTGGGAGCATCCAAAACAGATTTATTCTACGAACGCAAAAAGTATGGA
TTTAAGCGGCGATGA
back to top
Synonyms
Publications