jgi.p|Nanoce1779_2|587575, mRNA_4703 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587575
Unique NamemRNA_4703
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1229
Alignment locationscaffold_9:432776..434004 -

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Properties
Property NameValue
TranscriptId587661
TrackFilteredModels2
ProteinId587575
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:432776..434004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587575gene_4703Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587575mRNA_4703-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4703CDS_4703Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4703 ID=mRNA_4703|Name=jgi.p|Nanoce1779_2|587575|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
CGGCACACAGCATTAGCCCCAGCGGCAGAATCTTGAATTAATTTAAAATG
ATGTGCGACGCCTGTTGTCGTACAAATGTGCAGCTGGGGCTCGGTCAAGA
CAGAAGAGGAAAGGGAGTTGGGAGCGTGCGGCTTCGATAGCAGACTCATT
TTGCCACCACCAAATACCACAGCCATGGCACCAGCTCAATCCCTTCGGCC
ATCAGACAAGGTTAAAAACGAGGAAGATGACCAAGACCTAGCAGCGCTGG
GTTTTTTATTCGACGCCGCGGCCGCAAAAGCATGGATCAAGCATGCCTTC
CCGACCTCCCCTCCCTCCTCCCACCAAAGCAACTACAGGCCCGCATTAAA
GTCAATAGAAGTAGAGGTACAGGTGATCGATGACGAGGACGGACCGGGGG
CACTCCAAACAGGCCAACGCACTTGGCCTGCGGCGCCCTTCATGGCGGAT
TACCTTGTGCGACATTGGAAACGCATAGCAGGGAGAGACGGTCCCATCCA
CGTCCTGGAATTGGGGGCGGGATGTGGGTTGCTGGGTCTGGCTCTCGCTC
AACTGCCTCCTGTGGAGCACGTTATAATGACTGATCATGATCCAGGCACG
ATGGTATTGATTCGAGAGGGTATTGCGCGGAACCATGCTAGGATACGGGA
GGGAACGCGGTGCGAGGCTGCATTAGTGGAATGGGGCGGTGAGATGGATG
CATGCCTATTGCCAAAGCCAGGGCACGGCAAAGAGGGAGGAAAAGACAAG
ACACCAGTGCTCTTGATTGTGGGGAGCGATTTGATCTATAGTGTGGATGT
GGTGGCAAGCTTATTTGAAACAGTATCGCGGGTGCTTAGGAAAAGAAGGG
AGGGATTTGAAGCAACAGTAACAGCAACAGCAACAGCAATAGTGGCGGCA
ACGGGTTCGGACAAATTTTTACTGTGCGGAAGCTTTGTATTGGGTGCAGT
TATCGACCGGAAGGTGGAGGAAGTGGTAAATAGATTGAAATTGCAGCAGG
AAATAGTCTCGCTGGATGATGAGATGGGGAATAAGGAGATGTGGATGCAT
GTATATACCCTCCCTCCTCCCCCACCCTCATCCTCATCTCGCGAGCAAGG
ACAGACGAAATCACTTTTGAATCAAAACTTCGCAAATTGGTGAAGAATGT
AATCCGAAAGCTTAATCTCTCTCTTCGTTTCCTTCTTTTCTTTTCTTTTC
TTACTTGAGGGTGGGGAGAAAGATACGCC
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protein sequence of jgi.p|Nanoce1779_2|587575

>mRNA_4703-protein ID=mRNA_4703-protein|Name=jgi.p|Nanoce1779_2|587575|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MCSWGSVKTEEERELGACGFDSRLILPPPNTTAMAPAQSLRPSDKVKNEE
DDQDLAALGFLFDAAAAKAWIKHAFPTSPPSSHQSNYRPALKSIEVEVQV
IDDEDGPGALQTGQRTWPAAPFMADYLVRHWKRIAGRDGPIHVLELGAGC
GLLGLALAQLPPVEHVIMTDHDPGTMVLIREGIARNHARIREGTRCEAAL
VEWGGEMDACLLPKPGHGKEGGKDKTPVLLIVGSDLIYSVDVVASLFETV
SRVLRKRREGFEATVTATATAIVAATGSDKFLLCGSFVLGAVIDRKVEEV
VNRLKLQQEIVSLDDEMGNKEMWMHVYTLPPPPPSSSSREQGQTKSLLNQ
NFANW*
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mRNA from alignment at scaffold_9:432776..434004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4703 ID=mRNA_4703|Name=jgi.p|Nanoce1779_2|587575|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp|location=Sequence derived from alignment at scaffold_9:432776..434004- (Nannochloropsis oceanica)
CGGCACACAGCATTAGCCCCAGCGGCAGAATCTTGAATTAATTTAAAATG
ATGTGCGACGCCTGTTGTCGTACAAATGTGCAGCTGGGGCTCGGTCAAGA
CAGAAGAGGAAAGGGAGTTGGGAGCGTGCGGCTTCGATAGCAGACTCATT
TTGCCACCACCAAATACCACAGCCATGGCACCAGCTCAATCCCTTCGGCC
ATCAGACAAGGTTAAAAACGAGGAAGATGACCAAGACCTAGCAGCGCTGG
GTTTTTTATTCGACGCCGCGGCCGCAAAAGCATGGATCAAGCATGCCTTC
CCGACCTCCCCTCCCTCCTCCCACCAAAGCAACTACAGGCCCGCATTAAA
GTCAATAGAAGTAGAGGTACAGGTGATCGATGACGAGGACGGACCGGGGG
CACTCCAAACAGGCCAACGCACTTGGCCTGCGGCGCCCTTCATGGCGGAT
TACCTTGTGCGACATTGGAAACGCATAGCAGGGAGAGACGGTCCCATCCA
CGTCCTGGAATTGGGGGCGGGATGTGGGTTGCTGGGTCTGGCTCTCGCTC
AACTGCCTCCTGTGGAGCACGTTATAATGACTGATCATGATCCAGGCACG
ATGGTATTGATTCGAGAGGGTATTGCGCGGAACCATGCTAGGATACGGGA
GGGAACGCGGTGCGAGGCTGCATTAGTGGAATGGGGCGGTGAGATGGATG
CATGCCTATTGCCAAAGCCAGGGCACGGCAAAGAGGGAGGAAAAGACAAG
ACACCAGTGCTCTTGATTGTGGGGAGCGATTTGATCTATAGTGTGGATGT
GGTGGCAAGCTTATTTGAAACAGTATCGCGGGTGCTTAGGAAAAGAAGGG
AGGGATTTGAAGCAACAGTAACAGCAACAGCAACAGCAATAGTGGCGGCA
ACGGGTTCGGACAAATTTTTACTGTGCGGAAGCTTTGTATTGGGTGCAGT
TATCGACCGGAAGGTGGAGGAAGTGGTAAATAGATTGAAATTGCAGCAGG
AAATAGTCTCGCTGGATGATGAGATGGGGAATAAGGAGATGTGGATGCAT
GTATATACCCTCCCTCCTCCCCCACCCTCATCCTCATCTCGCGAGCAAGG
ACAGACGAAATCACTTTTGAATCAAAACTTCGCAAATTGGTGAAGAATGT
AATCCGAAAGCTTAATCTCTCTCTTCGTTTCCTTCTTTTCTTTTCTTTTC
TTACTTGAGGGTGGGGAGAAAGATACGCC
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Coding sequence (CDS) from alignment at scaffold_9:432776..434004-

>mRNA_4703 ID=mRNA_4703|Name=jgi.p|Nanoce1779_2|587575|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_9:432776..434004- (Nannochloropsis oceanica)
ATGTGCAGCTGGGGCTCGGTCAAGACAGAAGAGGAAAGGGAGTTGGGAGC
GTGCGGCTTCGATAGCAGACTCATTTTGCCACCACCAAATACCACAGCCA
TGGCACCAGCTCAATCCCTTCGGCCATCAGACAAGGTTAAAAACGAGGAA
GATGACCAAGACCTAGCAGCGCTGGGTTTTTTATTCGACGCCGCGGCCGC
AAAAGCATGGATCAAGCATGCCTTCCCGACCTCCCCTCCCTCCTCCCACC
AAAGCAACTACAGGCCCGCATTAAAGTCAATAGAAGTAGAGGTACAGGTG
ATCGATGACGAGGACGGACCGGGGGCACTCCAAACAGGCCAACGCACTTG
GCCTGCGGCGCCCTTCATGGCGGATTACCTTGTGCGACATTGGAAACGCA
TAGCAGGGAGAGACGGTCCCATCCACGTCCTGGAATTGGGGGCGGGATGT
GGGTTGCTGGGTCTGGCTCTCGCTCAACTGCCTCCTGTGGAGCACGTTAT
AATGACTGATCATGATCCAGGCACGATGGTATTGATTCGAGAGGGTATTG
CGCGGAACCATGCTAGGATACGGGAGGGAACGCGGTGCGAGGCTGCATTA
GTGGAATGGGGCGGTGAGATGGATGCATGCCTATTGCCAAAGCCAGGGCA
CGGCAAAGAGGGAGGAAAAGACAAGACACCAGTGCTCTTGATTGTGGGGA
GCGATTTGATCTATAGTGTGGATGTGGTGGCAAGCTTATTTGAAACAGTA
TCGCGGGTGCTTAGGAAAAGAAGGGAGGGATTTGAAGCAACAGTAACAGC
AACAGCAACAGCAATAGTGGCGGCAACGGGTTCGGACAAATTTTTACTGT
GCGGAAGCTTTGTATTGGGTGCAGTTATCGACCGGAAGGTGGAGGAAGTG
GTAAATAGATTGAAATTGCAGCAGGAAATAGTCTCGCTGGATGATGAGAT
GGGGAATAAGGAGATGTGGATGCATGTATATACCCTCCCTCCTCCCCCAC
CCTCATCCTCATCTCGCGAGCAAGGACAGACGAAATCACTTTTGAATCAA
AACTTCGCAAATTGGTGA
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Synonyms
Publications