jgi.p|Nanoce1779_2|527701, mRNA_4702 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527701
Unique Name	mRNA_4702
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1221
Alignment location	scaffold_9:431238..432494 +

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Properties


Property Name	Value
TranscriptId	527787
Track	FilteredModels2
ProteinId	527701

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:431238..432494 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527701	gene_4702	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527701	mRNA_4702-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4702	CDS_4702	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:431238..432494+
coding sequence from alignment at scaffold_9:431238..432494+

mRNA sequence

>mRNA_4702 ID=mRNA_4702|Name=jgi.p|Nanoce1779_2|527701|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ATGACGACGACTAGCCTGCCTCCCGTCGCCCCCCCTACTACCACCACCGC
TAGCAATAGCAATAGCACGGGTTACAATCGGCCGGGTCTGCCATGCTTTC
GCAAGCTGGAGCCGCGTGTCTTGCTCAAGTACCTGGAACACCACGGGCTG
ACTGCAAAGGCGGATGCGACTACCGAGGAGCTGGCCATGCTGGTCTCACG
GCACTTCGAACGCGAACCTGTCGATGAAGATGCTACGAATACCCTGGGCA
AGTTTGAAAAGAAGCGGAAGCGTGGGGGAGGCGCAGGCGGGGCCCATTAT
GCTTCCCACCACTATGGAGGAGGATCAGGCTACGCTCCCGTCCATCGGAA
GGAAGGCGGCCGTGGAGGAGGAGGAGGAGAAGGAGGGGGAGGAAATGGAT
CAGTGGCCACGGTGGATGAGGAAGTCGCGGCGCGTTTGTCTTGCCAGCTG
GTGGAGGATAGTACTGCTGGATGGATTCTGGCACGTATCATTAAATATGT
GCCGGAGCGAGATACGTACCAAGTGCGAGATGAAGACGACCATGCAAATG
TGCAGACGCTACCGTCGACGAATGTTATCCGGCTGCACGAAGAGAATTTG
TTGGATGTCCAAAAGAACGATACCGTCCTGGCCGTCTTTCCCGACACGAC
GAGTTTCTACCGCGCCCAGGTCACGAAGGTACCGAAGCGCGCACAGGGAG
GGATGGGGCCCTTGGAGGTGATGGTCAAATTTGAGGACGACGAGGACGAG
ACGGGCCGCACTCCTCATCGACGGGTCCCGGCCAGGCACGTGCTGAAGCT
ATCCCAGGTAGGGAGGTTCGAGGCGGCCAATGGATTGGGGAGGGAGGGAA
CGGGGGACGGAGGGTATGAAGGGGTGGGAGGGGGGGGGAAGAAGGGGTCG
ATCAAGGATTATAAGATCATGATTTCGCATGCGCTGCAGAAACTTCCGAA
TAGCAAGGGGACGTTGAAGGAGATTTTCAAGATCATCGAGAACGAGTTTA
GGGATGAGTTGCATTGGAAGATAGAGGGAGGGGGAGGAGATGGGGGGAAA
AAGGCCCCGATCTGGAAGCAGCAGGTGAGGAAATTGTTGACGAATCCGCG
GTCGGGTTTTATGTTCATCAATGCGGGAGGGGGGGAGAGGGGGTCGCAGG
TCTATTCTGAAAGTGGTGGGGGAGGGGTGGGAGGGGTGGGGGGAGGGAGT
AGCAGTTTCCATAGCTCGTGA

protein sequence of jgi.p|Nanoce1779_2|527701

>mRNA_4702-protein ID=mRNA_4702-protein|Name=jgi.p|Nanoce1779_2|527701|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MTTTSLPPVAPPTTTTASNSNSTGYNRPGLPCFRKLEPRVLLKYLEHHGL
TAKADATTEELAMLVSRHFEREPVDEDATNTLGKFEKKRKRGGGAGGAHY
ASHHYGGGSGYAPVHRKEGGRGGGGGEGGGGNGSVATVDEEVAARLSCQL
VEDSTAGWILARIIKYVPERDTYQVRDEDDHANVQTLPSTNVIRLHEENL
LDVQKNDTVLAVFPDTTSFYRAQVTKVPKRAQGGMGPLEVMVKFEDDEDE
TGRTPHRRVPARHVLKLSQVGRFEAANGLGREGTGDGGYEGVGGGGKKGS
IKDYKIMISHALQKLPNSKGTLKEIFKIIENEFRDELHWKIEGGGGDGGK
KAPIWKQQVRKLLTNPRSGFMFINAGGGERGSQVYSESGGGGVGGVGGGS
SSFHSS*

mRNA from alignment at scaffold_9:431238..432494+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4702 ID=mRNA_4702|Name=jgi.p|Nanoce1779_2|527701|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp|location=Sequence derived from alignment at scaffold_9:431238..432494+ (Nannochloropsis oceanica)
ATGACGACGACTAGCCTGCCTCCCGTCGCCCCCCCTACTACCACCACCGC
TAGCAATAGCAATAGCACGGGTTACAATCGGCCGGGTCTGCCATGCTTTC
GCAAGCTGGAGCCGCGTGTCTTGCTCAAGTACCTGGAACACCACGGGCTG
ACTGCAAAGGCGGATGCGACTACCGAGGAGCTGGCCATGCTGGTCTCACG
GCACTTCGAACGCGAACCTGTCGATGAAGATGTGGTCCTACATTCCTTTT
TCATGTCGGGGATGCAGGCTACGAATACCCTGGGCAAGTTTGAAAAGAAG
CGGAAGCGTGGGGGAGGCGCAGGCGGGGCCCATTATGCTTCCCACCACTA
TGGAGGAGGATCAGGCTACGCTCCCGTCCATCGGAAGGAAGGCGGCCGTG
GAGGAGGAGGAGGAGAAGGAGGGGGAGGAAATGGATCAGTGGCCACGGTG
GATGAGGAAGTCGCGGCGCGTTTGTCTTGCCAGCTGGTGGAGGATAGTAC
TGCTGGATGGATTCTGGCACGTATCATTAAATATGTGCCGGAGCGAGATA
CGTACCAAGTGCGAGATGAAGACGACCATGCAAATGTGCAGACGCTACCG
TCGACGAATGTTATCCGGCTGCACGAAGAGAATTTGTTGGATGTCCAAAA
GAACGATACCGTCCTGGCCGTCTTTCCCGACACGACGAGTTTCTACCGCG
CCCAGGTCACGAAGGTACCGAAGCGCGCACAGGGAGGGATGGGGCCCTTG
GAGGTGATGGTCAAATTTGAGGACGACGAGGACGAGACGGGCCGCACTCC
TCATCGACGGGTCCCGGCCAGGCACGTGCTGAAGCTATCCCAGGTAGGGA
GGTTCGAGGCGGCCAATGGATTGGGGAGGGAGGGAACGGGGGACGGAGGG
TATGAAGGGGTGGGAGGGGGGGGGAAGAAGGGGTCGATCAAGGATTATAA
GATCATGATTTCGCATGCGCTGCAGAAACTTCCGAATAGCAAGGGGACGT
TGAAGGAGATTTTCAAGATCATCGAGAACGAGTTTAGGGATGAGTTGCAT
TGGAAGATAGAGGGAGGGGGAGGAGATGGGGGGAAAAAGGCCCCGATCTG
GAAGCAGCAGGTGAGGAAATTGTTGACGAATCCGCGGTCGGGTTTTATGT
TCATCAATGCGGGAGGGGGGGAGAGGGGGTCGCAGGTCTATTCTGAAAGT
GGTGGGGGAGGGGTGGGAGGGGTGGGGGGAGGGAGTAGCAGTTTCCATAG
CTCGTGA

Coding sequence (CDS) from alignment at scaffold_9:431238..432494+

>mRNA_4702 ID=mRNA_4702|Name=jgi.p|Nanoce1779_2|527701|organism=Nannochloropsis oceanica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_9:431238..432494+ (Nannochloropsis oceanica)
ATGACGACGACTAGCCTGCCTCCCGTCGCCCCCCCTACTACCACCACCGC
TAGCAATAGCAATAGCACGGGTTACAATCGGCCGGGTCTGCCATGCTTTC
GCAAGCTGGAGCCGCGTGTCTTGCTCAAGTACCTGGAACACCACGGGCTG
ACTGCAAAGGCGGATGCGACTACCGAGGAGCTGGCCATGCTGGTCTCACG
GCACTTCGAACGCGAACCTGTCGATGAAGATGCTACGAATACCCTGGGCA
AGTTTGAAAAGAAGCGGAAGCGTGGGGGAGGCGCAGGCGGGGCCCATTAT
GCTTCCCACCACTATGGAGGAGGATCAGGCTACGCTCCCGTCCATCGGAA
GGAAGGCGGCCGTGGAGGAGGAGGAGGAGAAGGAGGGGGAGGAAATGGAT
CAGTGGCCACGGTGGATGAGGAAGTCGCGGCGCGTTTGTCTTGCCAGCTG
GTGGAGGATAGTACTGCTGGATGGATTCTGGCACGTATCATTAAATATGT
GCCGGAGCGAGATACGTACCAAGTGCGAGATGAAGACGACCATGCAAATG
TGCAGACGCTACCGTCGACGAATGTTATCCGGCTGCACGAAGAGAATTTG
TTGGATGTCCAAAAGAACGATACCGTCCTGGCCGTCTTTCCCGACACGAC
GAGTTTCTACCGCGCCCAGGTCACGAAGGTACCGAAGCGCGCACAGGGAG
GGATGGGGCCCTTGGAGGTGATGGTCAAATTTGAGGACGACGAGGACGAG
ACGGGCCGCACTCCTCATCGACGGGTCCCGGCCAGGCACGTGCTGAAGCT
ATCCCAGGTAGGGAGGTTCGAGGCGGCCAATGGATTGGGGAGGGAGGGAA
CGGGGGACGGAGGGTATGAAGGGGTGGGAGGGGGGGGGAAGAAGGGGTCG
ATCAAGGATTATAAGATCATGATTTCGCATGCGCTGCAGAAACTTCCGAA
TAGCAAGGGGACGTTGAAGGAGATTTTCAAGATCATCGAGAACGAGTTTA
GGGATGAGTTGCATTGGAAGATAGAGGGAGGGGGAGGAGATGGGGGGAAA
AAGGCCCCGATCTGGAAGCAGCAGGTGAGGAAATTGTTGACGAATCCGCG
GTCGGGTTTTATGTTCATCAATGCGGGAGGGGGGGAGAGGGGGTCGCAGG
TCTATTCTGAAAGTGGTGGGGGAGGGGTGGGAGGGGTGGGGGGAGGGAGT
AGCAGTTTCCATAGCTCGTGAATGACGACGACTAGCCTGCCTCCCGTCGC
CCCCCCTACTACCACCACCGCTAGCAATAGCAATAGCACGGGTTACAATC
GGCCGGGTCTGCCATGCTTTCGCAAGCTGGAGCCGCGTGTCTTGCTCAAG
TACCTGGAACACCACGGGCTGACTGCAAAGGCGGATGCGACTACCGAGGA
GCTGGCCATGCTGGTCTCACGGCACTTCGAACGCGAACCTGTCGATGAAG
ATGCTACGAATACCCTGGGCAAGTTTGAAAAGAAGCGGAAGCGTGGGGGA
GGCGCAGGCGGGGCCCATTATGCTTCCCACCACTATGGAGGAGGATCAGG
CTACGCTCCCGTCCATCGGAAGGAAGGCGGCCGTGGAGGAGGAGGAGGAG
AAGGAGGGGGAGGAAATGGATCAGTGGCCACGGTGGATGAGGAAGTCGCG
GCGCGTTTGTCTTGCCAGCTGGTGGAGGATAGTACTGCTGGATGGATTCT
GGCACGTATCATTAAATATGTGCCGGAGCGAGATACGTACCAAGTGCGAG
ATGAAGACGACCATGCAAATGTGCAGACGCTACCGTCGACGAATGTTATC
CGGCTGCACGAAGAGAATTTGTTGGATGTCCAAAAGAACGATACCGTCCT
GGCCGTCTTTCCCGACACGACGAGTTTCTACCGCGCCCAGGTCACGAAGG
TACCGAAGCGCGCACAGGGAGGGATGGGGCCCTTGGAGGTGATGGTCAAA
TTTGAGGACGACGAGGACGAGACGGGCCGCACTCCTCATCGACGGGTCCC
GGCCAGGCACGTGCTGAAGCTATCCCAGGTAGGGAGGTTCGAGGCGGCCA
ATGGATTGGGGAGGGAGGGAACGGGGGACGGAGGGTATGAAGGGGTGGGA
GGGGGGGGGAAGAAGGGGTCGATCAAGGATTATAAGATCATGATTTCGCA
TGCGCTGCAGAAACTTCCGAATAGCAAGGGGACGTTGAAGGAGATTTTCA
AGATCATCGAGAACGAGTTTAGGGATGAGTTGCATTGGAAGATAGAGGGA
GGGGGAGGAGATGGGGGGAAAAAGGCCCCGATCTGGAAGCAGCAGGTGAG
GAAATTGTTGACGAATCCGCGGTCGGGTTTTATGTTCATCAATGCGGGAG
GGGGGGAGAGGGGGTCGCAGGTCTATTCTGAAAGTGGTGGGGGAGGGGTG
GGAGGGGTGGGGGGAGGGAGTAGCAGTTTCCATAGCTCGTGA

Synonyms

Publications