jgi.p|Nanoce1779_2|541121, mRNA_4701 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|541121
Unique Name	mRNA_4701
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2332
Alignment location	scaffold_9:428036..430367 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	541207
Track	FilteredModels2
ProteinId	541121

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:428036..430367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541121	gene_4701	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541121	mRNA_4701-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4701	CDS_4701	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:428036..430367+
coding sequence from alignment at scaffold_9:428036..430367+

mRNA sequence

>mRNA_4701 ID=mRNA_4701|Name=jgi.p|Nanoce1779_2|541121|organism=Nannochloropsis oceanica|type=mRNA|length=2332bp
ACAAGGCTGTTCGCAGACTCTCTATATCACGCCCCTTCTTCGAGGAGAGC
AGCAGCAGCAGCTGGAGGAGGGGCCCTCGCAAAGACATCTCGAACGGGTG
GTACATCCATTGATGATGGTAGCCAGTTCAAAATGTCTTATCTTCGTGAA
ATTCTTGTCTCTGACGCTAGCTTACCGCGTGATGAAGATAGAACGAGCGG
AAGCCCGCAGTCATACTAGCAGCACCAAACAATCCAACCCGAGCAACACG
ACGGTGACGGTGGTACTCACCGCACGAAGAGAAGAAACAGAAGAGCTCAA
GGAAGACAAAGAAGCACTTCAAAGTAGATCTACCAGCTTCGGTGCCATTG
TCTGTGAAGAGATTTTGGAAGTGTTCAGGCAAAGCAAGACGAGAGACGAT
GCCTTTCGAATGCAAGGAGTCCTCCTTTCAGCACCACGAGGGGCAGGCAA
GACCATGTTCCTGCAGCAGCTGCAGCGCCAACTCAGCACAATGGCAACAA
CGGTGTATGTGCGGGGAAAACATGTCGTGGAAGCCTTGATGGCTGCGGAG
GGCATTAGTGGTCCGAAGAGCAAGAACGAGGGCGAGAGGGAAGGAGGGGA
CGAGGCAGGGGACGACTACCTACGTCAGCGGTTGGGGCTCTCATTTTCGG
AGGACGGGAAAGAAAGTGTTGTGGTTTTGGTTGATGATTTTGACGCAATA
TTGTCGGGGGAAGATGAAGGAGGGATGGAGGAAGAGGGGGCAGCCACGCA
GGAGGAGATAGAGGAGGAATTGCAATTGGGAGGACGAGAGACGACCCGTG
CACTGAAGACGCTGCAGCGACTGTTGAAAGGTCCAGCAGCAGCAGGAGCA
ATGTCGCGTCTGCCGGTATTGTGGGTGTTGGCCGCGCGAGAAAGTATGAG
TGAGAGCGGAGGAGGAGGAGGGGGTGCAAGCCTGCAGCGGCGTCTGGCCC
AGCAGCATGGGAGGCTGTTCGACAAGGTGGTGAAGCTTCCTCGCCCTCGT
GTCGAAGACCGAGCTTCAATTTTACGGCATACTCTGGAACTCACGGCACC
AAACCTCCTTCCCAAGGGCAACAGTGAGAAGGTGGAGGAAGGGAAAAAGG
TAGAGGAGTTACTGCGGAGAGTGGCGGAGATGACTGATGGTTTCTTGCCA
GGGGACCTCGTCACGCTGTGTCGAGTCGCGGCGTTGCATGCTTTTGCAGG
AACAACAATAGCAACAGTAGAAACGACAGCTATAGATAGGGGAGAAGGAG
AAATGGAGAGGAATGCTACGTCATTCCTCCTCTCCTCCTACTCAAGGTCC
TTATCTGCCTTTATTGCCGCTCGTCGAGAAGTCTCTCCGGCGGTGCTCAG
CGGGTTGGCTGACCGCGAAAACAACAATATAGGAGGAACGATAAGGAATA
ATAAAAAACTGTGCTGGGCGAGTGTAGGAGGATACGAGGACGTCAAAAAC
CGACTCCGGAAGTTGGTGGAGTGGCCCATTCTCTACTCTGAGACCTTCGC
CCGGCTCGGCCTGCGAGGTCCCCAACCCTCCTCCTCCTCCACCCGCTTGT
CTTCCACTTTGCCAAGTGGTGGAATTTTACTGTACGGCCCTAGCGGGTGC
GGGAAGAGTTTGTTGGCCCGTGTGCTGGCAGAGGAGGTTAAAGCCAATTT
TGTCGAGCTCCCCGCCACCGAGGTCTTCTCTCCCTTCCTCGGTGATAGCG
AAGCAAGGGTCCGCAAAGCATTTGCCCGAGCCCGACAAGCGGCGCCCTGC
ATTTTGTTCCTGGACGAACTGGATGCGATGGCGGCAAAGAGAGGGGTAGG
GGGGAAGGGAGGAGGGGTAGGGGTAGGGAGTGGGGGAGTATACGCCCGAG
TGCTCTCTACGTTGCTGAATGAGATGGACGGCGTGTCAGGGCAAGCAGAG
GGCTTACTGATCCTAGCAGCGACCAATCGACGGGAGGCGGTGGACGCGGC
GTTGCTTCGCCCGGGAAGATTACAGGAGTTGTTGTTGGTGCCTTACCCGA
GGCCCGAACTCGACTACCTTCCAATCTTACAAGTGGCTACGAGACACATG
CCTTTGCATATAGATGTGGATCTAGCGGGGCTTGTAACGAACGTGCTCAA
GCCGCTAATGGACGAAGGAGAAACAAAAATTATAACGCCAGCAAATTTGA
TGGCCTTGTGCCGGGAGGCGGGCCTAGCGTGCTTGCGGGAGACGGAGGGA
GAGGGGGAGGTGGGAAAGGAGGTAGACAAGGCGGATTTGGTGGTGCGCCA
AGAGCATTTTGTGCAGGCGGCGGTCAAACTGTTATAGGGTTTTAATAAAA
CAAAAAGTAAAGTAAACCGTTTTGTTGCAGCC

protein sequence of jgi.p|Nanoce1779_2|541121

>mRNA_4701-protein ID=mRNA_4701-protein|Name=jgi.p|Nanoce1779_2|541121|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MMVASSKCLIFVKFLSLTLAYRVMKIERAEARSHTSSTKQSNPSNTTVTV
VLTARREETEELKEDKEALQSRSTSFGAIVCEEILEVFRQSKTRDDAFRM
QGVLLSAPRGAGKTMFLQQLQRQLSTMATTVYVRGKHVVEALMAAEGISG
PKSKNEGEREGGDEAGDDYLRQRLGLSFSEDGKESVVVLVDDFDAILSGE
DEGGMEEEGAATQEEIEEELQLGGRETTRALKTLQRLLKGPAAAGAMSRL
PVLWVLAARESMSESGGGGGGASLQRRLAQQHGRLFDKVVKLPRPRVEDR
ASILRHTLELTAPNLLPKGNSEKVEEGKKVEELLRRVAEMTDGFLPGDLV
TLCRVAALHAFAGTTIATVETTAIDRGEGEMERNATSFLLSSYSRSLSAF
IAARREVSPAVLSGLADRENNNIGGTIRNNKKLCWASVGGYEDVKNRLRK
LVEWPILYSETFARLGLRGPQPSSSSTRLSSTLPSGGILLYGPSGCGKSL
LARVLAEEVKANFVELPATEVFSPFLGDSEARVRKAFARARQAAPCILFL
DELDAMAAKRGVGGKGGGVGVGSGGVYARVLSTLLNEMDGVSGQAEGLLI
LAATNRREAVDAALLRPGRLQELLLVPYPRPELDYLPILQVATRHMPLHI
DVDLAGLVTNVLKPLMDEGETKIITPANLMALCREAGLACLRETEGEGEV
GKEVDKADLVVRQEHFVQAAVKLL*

mRNA from alignment at scaffold_9:428036..430367+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4701 ID=mRNA_4701|Name=jgi.p|Nanoce1779_2|541121|organism=Nannochloropsis oceanica|type=mRNA|length=2332bp|location=Sequence derived from alignment at scaffold_9:428036..430367+ (Nannochloropsis oceanica)
ACAAGGCTGTTCGCAGACTCTCTATATCACGCCCCTTCTTCGAGGAGAGC
AGCAGCAGCAGCTGGAGGAGGGGCCCTCGCAAAGACATCTCGAACGGGTG
GTACATCCATTGATGATGGTAGCCAGTTCAAAATGTCTTATCTTCGTGAA
ATTCTTGTCTCTGACGCTAGCTTACCGCGTGATGAAGATAGAACGAGCGG
AAGCCCGCAGTCATACTAGCAGCACCAAACAATCCAACCCGAGCAACACG
ACGGTGACGGTGGTACTCACCGCACGAAGAGAAGAAACAGAAGAGCTCAA
GGAAGACAAAGAAGCACTTCAAAGTAGATCTACCAGCTTCGGTGCCATTG
TCTGTGAAGAGATTTTGGAAGTGTTCAGGCAAAGCAAGACGAGAGACGAT
GCCTTTCGAATGCAAGGAGTCCTCCTTTCAGCACCACGAGGGGCAGGCAA
GACCATGTTCCTGCAGCAGCTGCAGCGCCAACTCAGCACAATGGCAACAA
CGGTGTATGTGCGGGGAAAACATGTCGTGGAAGCCTTGATGGCTGCGGAG
GGCATTAGTGGTCCGAAGAGCAAGAACGAGGGCGAGAGGGAAGGAGGGGA
CGAGGCAGGGGACGACTACCTACGTCAGCGGTTGGGGCTCTCATTTTCGG
AGGACGGGAAAGAAAGTGTTGTGGTTTTGGTTGATGATTTTGACGCAATA
TTGTCGGGGGAAGATGAAGGAGGGATGGAGGAAGAGGGGGCAGCCACGCA
GGAGGAGATAGAGGAGGAATTGCAATTGGGAGGACGAGAGACGACCCGTG
CACTGAAGACGCTGCAGCGACTGTTGAAAGGTCCAGCAGCAGCAGGAGCA
ATGTCGCGTCTGCCGGTATTGTGGGTGTTGGCCGCGCGAGAAAGTATGAG
TGAGAGCGGAGGAGGAGGAGGGGGTGCAAGCCTGCAGCGGCGTCTGGCCC
AGCAGCATGGGAGGCTGTTCGACAAGGTGGTGAAGCTTCCTCGCCCTCGT
GTCGAAGACCGAGCTTCAATTTTACGGCATACTCTGGAACTCACGGCACC
AAACCTCCTTCCCAAGGGCAACAGTGAGAAGGTGGAGGAAGGGAAAAAGG
TAGAGGAGTTACTGCGGAGAGTGGCGGAGATGACTGATGGTTTCTTGCCA
GGGGACCTCGTCACGCTGTGTCGAGTCGCGGCGTTGCATGCTTTTGCAGG
AACAACAATAGCAACAGTAGAAACGACAGCTATAGATAGGGGAGAAGGAG
AAATGGAGAGGAATGCTACGTCATTCCTCCTCTCCTCCTACTCAAGGTCC
TTATCTGCCTTTATTGCCGCTCGTCGAGAAGTCTCTCCGGCGGTGCTCAG
CGGGTTGGCTGACCGCGAAAACAACAATATAGGAGGAACGATAAGGAATA
ATAAAAAACTGTGCTGGGCGAGTGTAGGAGGATACGAGGACGTCAAAAAC
CGACTCCGGAAGTTGGTGGAGTGGCCCATTCTCTACTCTGAGACCTTCGC
CCGGCTCGGCCTGCGAGGTCCCCAACCCTCCTCCTCCTCCACCCGCTTGT
CTTCCACTTTGCCAAGTGGTGGAATTTTACTGTACGGCCCTAGCGGGTGC
GGGAAGAGTTTGTTGGCCCGTGTGCTGGCAGAGGAGGTTAAAGCCAATTT
TGTCGAGCTCCCCGCCACCGAGGTCTTCTCTCCCTTCCTCGGTGATAGCG
AAGCAAGGGTCCGCAAAGCATTTGCCCGAGCCCGACAAGCGGCGCCCTGC
ATTTTGTTCCTGGACGAACTGGATGCGATGGCGGCAAAGAGAGGGGTAGG
GGGGAAGGGAGGAGGGGTAGGGGTAGGGAGTGGGGGAGTATACGCCCGAG
TGCTCTCTACGTTGCTGAATGAGATGGACGGCGTGTCAGGGCAAGCAGAG
GGCTTACTGATCCTAGCAGCGACCAATCGACGGGAGGCGGTGGACGCGGC
GTTGCTTCGCCCGGGAAGATTACAGGAGTTGTTGTTGGTGCCTTACCCGA
GGCCCGAACTCGACTACCTTCCAATCTTACAAGTGGCTACGAGACACATG
CCTTTGCATATAGATGTGGATCTAGCGGGGCTTGTAACGAACGTGCTCAA
GCCGCTAATGGACGAAGGAGAAACAAAAATTATAACGCCAGCAAATTTGA
TGGCCTTGTGCCGGGAGGCGGGCCTAGCGTGCTTGCGGGAGACGGAGGGA
GAGGGGGAGGTGGGAAAGGAGGTAGACAAGGCGGATTTGGTGGTGCGCCA
AGAGCATTTTGTGCAGGCGGCGGTCAAACTGTTATAGGGTTTTAATAAAA
CAAAAAGTAAAGTAAACCGTTTTGTTGCAGCC

Coding sequence (CDS) from alignment at scaffold_9:428036..430367+

>mRNA_4701 ID=mRNA_4701|Name=jgi.p|Nanoce1779_2|541121|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at scaffold_9:428036..430367+ (Nannochloropsis oceanica)
ATGATGGTAGCCAGTTCAAAATGTCTTATCTTCGTGAAATTCTTGTCTCT
GACGCTAGCTTACCGCGTGATGAAGATAGAACGAGCGGAAGCCCGCAGTC
ATACTAGCAGCACCAAACAATCCAACCCGAGCAACACGACGGTGACGGTG
GTACTCACCGCACGAAGAGAAGAAACAGAAGAGCTCAAGGAAGACAAAGA
AGCACTTCAAAGTAGATCTACCAGCTTCGGTGCCATTGTCTGTGAAGAGA
TTTTGGAAGTGTTCAGGCAAAGCAAGACGAGAGACGATGCCTTTCGAATG
CAAGGAGTCCTCCTTTCAGCACCACGAGGGGCAGGCAAGACCATGTTCCT
GCAGCAGCTGCAGCGCCAACTCAGCACAATGGCAACAACGGTGTATGTGC
GGGGAAAACATGTCGTGGAAGCCTTGATGGCTGCGGAGGGCATTAGTGGT
CCGAAGAGCAAGAACGAGGGCGAGAGGGAAGGAGGGGACGAGGCAGGGGA
CGACTACCTACGTCAGCGGTTGGGGCTCTCATTTTCGGAGGACGGGAAAG
AAAGTGTTGTGGTTTTGGTTGATGATTTTGACGCAATATTGTCGGGGGAA
GATGAAGGAGGGATGGAGGAAGAGGGGGCAGCCACGCAGGAGGAGATAGA
GGAGGAATTGCAATTGGGAGGACGAGAGACGACCCGTGCACTGAAGACGC
TGCAGCGACTGTTGAAAGGTCCAGCAGCAGCAGGAGCAATGTCGCGTCTG
CCGGTATTGTGGGTGTTGGCCGCGCGAGAAAGTATGAGTGAGAGCGGAGG
AGGAGGAGGGGGTGCAAGCCTGCAGCGGCGTCTGGCCCAGCAGCATGGGA
GGCTGTTCGACAAGGTGGTGAAGCTTCCTCGCCCTCGTGTCGAAGACCGA
GCTTCAATTTTACGGCATACTCTGGAACTCACGGCACCAAACCTCCTTCC
CAAGGGCAACAGTGAGAAGGTGGAGGAAGGGAAAAAGGTAGAGGAGTTAC
TGCGGAGAGTGGCGGAGATGACTGATGGTTTCTTGCCAGGGGACCTCGTC
ACGCTGTGTCGAGTCGCGGCGTTGCATGCTTTTGCAGGAACAACAATAGC
AACAGTAGAAACGACAGCTATAGATAGGGGAGAAGGAGAAATGGAGAGGA
ATGCTACGTCATTCCTCCTCTCCTCCTACTCAAGGTCCTTATCTGCCTTT
ATTGCCGCTCGTCGAGAAGTCTCTCCGGCGGTGCTCAGCGGGTTGGCTGA
CCGCGAAAACAACAATATAGGAGGAACGATAAGGAATAATAAAAAACTGT
GCTGGGCGAGTGTAGGAGGATACGAGGACGTCAAAAACCGACTCCGGAAG
TTGGTGGAGTGGCCCATTCTCTACTCTGAGACCTTCGCCCGGCTCGGCCT
GCGAGGTCCCCAACCCTCCTCCTCCTCCACCCGCTTGTCTTCCACTTTGC
CAAGTGGTGGAATTTTACTGTACGGCCCTAGCGGGTGCGGGAAGAGTTTG
TTGGCCCGTGTGCTGGCAGAGGAGGTTAAAGCCAATTTTGTCGAGCTCCC
CGCCACCGAGGTCTTCTCTCCCTTCCTCGGTGATAGCGAAGCAAGGGTCC
GCAAAGCATTTGCCCGAGCCCGACAAGCGGCGCCCTGCATTTTGTTCCTG
GACGAACTGGATGCGATGGCGGCAAAGAGAGGGGTAGGGGGGAAGGGAGG
AGGGGTAGGGGTAGGGAGTGGGGGAGTATACGCCCGAGTGCTCTCTACGT
TGCTGAATGAGATGGACGGCGTGTCAGGGCAAGCAGAGGGCTTACTGATC
CTAGCAGCGACCAATCGACGGGAGGCGGTGGACGCGGCGTTGCTTCGCCC
GGGAAGATTACAGGAGTTGTTGTTGGTGCCTTACCCGAGGCCCGAACTCG
ACTACCTTCCAATCTTACAAGTGGCTACGAGACACATGCCTTTGCATATA
GATGTGGATCTAGCGGGGCTTGTAACGAACGTGCTCAAGCCGCTAATGGA
CGAAGGAGAAACAAAAATTATAACGCCAGCAAATTTGATGGCCTTGTGCC
GGGAGGCGGGCCTAGCGTGCTTGCGGGAGACGGAGGGAGAGGGGGAGGTG
GGAAAGGAGGTAGACAAGGCGGATTTGGTGGTGCGCCAAGAGCATTTTGT
GCAGGCGGCGGTCAAACTGTTATAG

Synonyms

Publications