jgi.p|Nanoce1779_2|587563, mRNA_4700 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587563
Unique NamemRNA_4700
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1222
Alignment locationscaffold_9:425740..427351 +

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Properties
Property NameValue
TranscriptId587649
TrackFilteredModels2
ProteinId587563
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:425740..427351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587563gene_4700Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587563mRNA_4700-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4700CDS_4700Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4700 ID=mRNA_4700|Name=jgi.p|Nanoce1779_2|587563|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp
GTGAGCACCACACACATGAGGTTTCGTTCCTCGCCTCCACCGTGACCAGG
TCAATGCCCTACATATCCTCCACCCAAGATTGACCCCAAGCCTAATGAAG
TGTACACATACCCAACAAACGCGGCTGATGGTGGTGGGGAGGTCCAATGG
AGACGAAGCGGTTTTCGGTGTTGACTGCTCCTCGTTAGTCGTGAGTGGGT
GGGAGGCCATCGCCTTCTTCAGGCCTCCACATGCCTTGCCCACACCCTTA
TGAGGCACTGACATCCTCTGTCGGGACAAGTGCAGCATTGTAGCTTGCCT
ATATTTCCTAGCCAGATATATGCCATACCAGCTGTATCGGAAGGCCCAGC
CTGGCGTGGTCAATTCCTCGTTGCTTCGCCTCACCCCTTCATCATCGTCC
ACTGCATGCCTTCCCTCACCCACCTGTACTCACAGACCCTTCCATCTCCT
CACATAAACCATCGCAGGCAGGATGAAGTTTAGCCCTAACGTCTCGTCCT
CCCGTCGCAAGAGCCGCAAGGCTCACTTCACGGCCCCTTCTCACGTGAGG
CGGACAATCATGACGGCGCCTCTGTCCAAGGAGCTCCAGGCCAAGTATAA
GGTCCGATCCATGCCCATTCGCAAAGATGATGAGGTGCAAGTGGTGCGTG
GCGGGTTCAAGAACCGAGAGGGGAAGGTCACGACGGTATACCGCAAGAAG
TTCGTCATCCACATCGACAGAATCACCCGCGAGAAGGCCAATGGCGCCAC
AGTCCATGTCGGGATCGATGCCTCCAAGGTACACATCACCAAGCTTAAGC
TAAACAAGGCCCGCAAAGAGATTTTGGAGCGCAAGGCACGCACGGGTGCG
GGGAGCAAAGGGAAGGTGACAGAGGCGGAAGTTGGAGCGAACATGGGTGG
CGTCGATTGAAAAAGCAAGATCAACGCGGATGAGGAAAGATTAGTGGAAA
GGGAGGATTAGGGCATCCCTCCTAGGCGGCGACGGCGACGACGACATTAT
GTAGAGAAGACTCCGGCAACAATACCTTTTTACCCTTGGAGGTTCTTGGT
CTATCTGCTTATGTTCCGGCGGTTGAGGTGGTCAGGGGTGAGTGGGATGA
GGAATGGGAAGGGACTTCTCTCGTGGTCCACTGCGCTCGATATCTTGCTG
AGGACAAATAAAAAGAAAGAAGAGACTGACAGGGAAAACACGATGATAAA
TCAACTTTTGCTTCAAATTTGG
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protein sequence of jgi.p|Nanoce1779_2|587563

>mRNA_4700-protein ID=mRNA_4700-protein|Name=jgi.p|Nanoce1779_2|587563|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIR
KDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDA
SKVHITKLKLNKARKEILERKARTGAGSKGKVTEAEVGANMGGVD*
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mRNA from alignment at scaffold_9:425740..427351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4700 ID=mRNA_4700|Name=jgi.p|Nanoce1779_2|587563|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at scaffold_9:425740..427351+ (Nannochloropsis oceanica)
GTGAGCACCACACACATGAGGTTTCGTTCCTCGCCTCCACCGTGACCAGG
TCAATGCCCTACATATCCTCCACCCAAGATTGACCCCAAGCCTAATGAAG
TGTACACATACCCAACAAACGCGGCTGATGGTGGTGGGGAGGTCCAATGG
AGACGAAGCGGTTTTCGGTGTTGACTGCTCCTCGTTAGTCGTGAGTGGGT
GGGAGGCCATCGCCTTCTTCAGGCCTCCACATGCCTTGCCCACACCCTTA
TGAGGCACTGACATCCTCTGTCGGGACAAGTGCAGCATTGTAGCTTGCCT
ATATTTCCTAGCCAGATATATGCCATACCAGCTGTATCGGAAGGCCCAGC
CTGGCGTGGTCAATTCCTCGTTGCTTCGCCTCACCCCTTCATCATCGTCC
ACTGCATGCCTTCCCTCACCCACCTGTACTCACAGACCCTTCCATCTCCT
CACATAAACCATCGCAGGCAGGATGAAGTTTAGCCCTAACGTCTCGTCCT
CCCGTCGCAAGAGCCGCAAGGCTCACTTCACGGCCCCTTCTCACGTGAGG
CGGACAATCATGACGGCGCCTCTGTCCAAGGAGCTCCAGGCCAAGTATAA
GGTACGTGCGCGCGGCGGGCTTGGTAAAAGAGCTGAGATAGAAAGAAGAA
AGAGAGCAGAGGATATAGAGTCATTATGCATGTAGATATGCTGTGGAAGG
AGAGGAGCAAGGAAATCAGTGTAACAACAACATGGCGTGGAGGCATATCG
GTAGGAGAGGCTGCACCAGGCCTGCGACACTGCACATTTTTTGTACGGTT
TCTTGGTCTCCCTCCTTTCTCTTCAGCACATTTGTTTCGTAGTGACAGGG
ATGTTGGACGGGAGATCGAGGGGTCTTCATGAGCCATCACTATCACCATG
AGCAGCAGCACGTCTCCTATTTTTGTGTTCATCGTCCACACACGCATGCT
CACTTCTTTCTGTCTCCCTCCTTTCCTCATTACCAACTCAGGTCCGATCC
ATGCCCATTCGCAAAGATGATGAGGTGCAAGTGGTGCGTGGCGGGTTCAA
GAACCGAGAGGGGAAGGTCACGACGGTATACCGCAAGAAGTTCGTCATCC
ACATCGACAGAATCACCCGCGAGAAGGCCAATGGCGCCACAGTCCATGTC
GGGATCGATGCCTCCAAGGTACACATCACCAAGCTTAAGCTAAACAAGGC
CCGCAAAGAGATTTTGGAGCGCAAGGCACGCACGGGTGCGGGGAGCAAAG
GGAAGGTGACAGAGGCGGAAGTTGGAGCGAACATGGGTGGCGTCGATTGA
AAAAGCAAGATCAACGCGGATGAGGAAAGATTAGTGGAAAGGGAGGATTA
GGGCATCCCTCCTAGGCGGCGACGGCGACGACGACATTATGTAGAGAAGA
CTCCGGCAACAATACCTTTTTACCCTTGGAGGTTCTTGGTCTATCTGCTT
ATGTTCCGGCGGTTGAGGTGGTCAGGGGTGAGTGGGATGAGGAATGGGAA
GGGACTTCTCTCGTGGTCCACTGCGCTCGATATCTTGCTGAGGACAAATA
AAAAGAAAGAAGAGACTGACAGGGAAAACACGATGATAAATCAACTTTTG
CTTCAAATTTGG
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Coding sequence (CDS) from alignment at scaffold_9:425740..427351+

>mRNA_4700 ID=mRNA_4700|Name=jgi.p|Nanoce1779_2|587563|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_9:425740..427351+ (Nannochloropsis oceanica)
ATGAAGTTTAGCCCTAACGTCTCGTCCTCCCGTCGCAAGAGCCGCAAGGC
TCACTTCACGGCCCCTTCTCACGTGAGGCGGACAATCATGACGGCGCCTC
TGTCCAAGGAGCTCCAGGCCAAGTATAAGGTCCGATCCATGCCCATTCGC
AAAGATGATGAGGTGCAAGTGGTGCGTGGCGGGTTCAAGAACCGAGAGGG
GAAGGTCACGACGGTATACCGCAAGAAGTTCGTCATCCACATCGACAGAA
TCACCCGCGAGAAGGCCAATGGCGCCACAGTCCATGTCGGGATCGATGCC
TCCAAGGTACACATCACCAAGCTTAAGCTAAACAAGGCCCGCAAAGAGAT
TTTGGAGCGCAAGGCACGCACGGGTGCGGGGAGCAAAGGGAAGGTGACAG
AGGCGGAAGTTGGAGCGAACATGGGTGGCGTCGATTGAATGAAGTTTAGC
CCTAACGTCTCGTCCTCCCGTCGCAAGAGCCGCAAGGCTCACTTCACGGC
CCCTTCTCACGTGAGGCGGACAATCATGACGGCGCCTCTGTCCAAGGAGC
TCCAGGCCAAGTATAAGGTCCGATCCATGCCCATTCGCAAAGATGATGAG
GTGCAAGTGGTGCGTGGCGGGTTCAAGAACCGAGAGGGGAAGGTCACGAC
GGTATACCGCAAGAAGTTCGTCATCCACATCGACAGAATCACCCGCGAGA
AGGCCAATGGCGCCACAGTCCATGTCGGGATCGATGCCTCCAAGGTACAC
ATCACCAAGCTTAAGCTAAACAAGGCCCGCAAAGAGATTTTGGAGCGCAA
GGCACGCACGGGTGCGGGGAGCAAAGGGAAGGTGACAGAGGCGGAAGTTG
GAGCGAACATGGGTGGCGTCGATTGA
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Synonyms
Publications