jgi.p|Nanoce1779_2|576021, mRNA_47 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576021
Unique NamemRNA_47
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length349
Alignment locationscaffold_3:134790..135138 -

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Properties
Property NameValue
TranscriptId576107
TrackFilteredModels2
ProteinId576021
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:134790..135138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576021gene_47Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576021mRNA_47-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_47CDS_47Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_47 ID=mRNA_47|Name=jgi.p|Nanoce1779_2|576021|organism=Nannochloropsis oceanica|type=mRNA|length=349bp
TTTTTGAGCGAGGAGGAACTTCGGTAAGGAGGGAGGAAGGGAGGGAGGGA
GGGAGGGATAAGATGGAAGGTCAACTTGGCTCTTACTCATGCATGACCAT
GAACTCCTCCTCCCTCCTTCCTTTCTTCCCTCCCTCCTTCCGTCCAACCC
TCAGTGCACTCGCTATCTCAGGTCGGACGGAGCTGTCGCCGGTGTGTGCC
GTCATTGGCGGTATTTTGGGGCAAGAGATATTAAAGGCTGTTTCACGTAA
AGGTGAGCCAGCCCTTAATTGCTTCCTGTGGGATGGGGAGACGCATGAAG
GGAGGGTGATCCAGGTACCGCCGCCTGCGGTAAAGAGGTAGGGGGGGAC
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protein sequence of jgi.p|Nanoce1779_2|576021

>mRNA_47-protein ID=mRNA_47-protein|Name=jgi.p|Nanoce1779_2|576021|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MEGQLGSYSCMTMNSSSLLPFFPPSFRPTLSALAISGRTELSPVCAVIGG
ILGQEILKAVSRKGEPALNCFLWDGETHEGRVIQVPPPAVKR*
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mRNA from alignment at scaffold_3:134790..135138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_47 ID=mRNA_47|Name=jgi.p|Nanoce1779_2|576021|organism=Nannochloropsis oceanica|type=mRNA|length=349bp|location=Sequence derived from alignment at scaffold_3:134790..135138- (Nannochloropsis oceanica)
TTTTTGAGCGAGGAGGAACTTCGGTAAGGAGGGAGGAAGGGAGGGAGGGA
GGGAGGGATAAGATGGAAGGTCAACTTGGCTCTTACTCATGCATGACCAT
GAACTCCTCCTCCCTCCTTCCTTTCTTCCCTCCCTCCTTCCGTCCAACCC
TCAGTGCACTCGCTATCTCAGGTCGGACGGAGCTGTCGCCGGTGTGTGCC
GTCATTGGCGGTATTTTGGGGCAAGAGATATTAAAGGCTGTTTCACGTAA
AGGTGAGCCAGCCCTTAATTGCTTCCTGTGGGATGGGGAGACGCATGAAG
GGAGGGTGATCCAGGTACCGCCGCCTGCGGTAAAGAGGTAGGGGGGGAC
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Coding sequence (CDS) from alignment at scaffold_3:134790..135138-

>mRNA_47 ID=mRNA_47|Name=jgi.p|Nanoce1779_2|576021|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_3:134790..135138- (Nannochloropsis oceanica)
ATGGAAGGTCAACTTGGCTCTTACTCATGCATGACCATGAACTCCTCCTC
CCTCCTTCCTTTCTTCCCTCCCTCCTTCCGTCCAACCCTCAGTGCACTCG
CTATCTCAGGTCGGACGGAGCTGTCGCCGGTGTGTGCCGTCATTGGCGGT
ATTTTGGGGCAAGAGATATTAAAGGCTGTTTCACGTAAAGGTGAGCCAGC
CCTTAATTGCTTCCTGTGGGATGGGGAGACGCATGAAGGGAGGGTGATCC
AGGTACCGCCGCCTGCGGTAAAGAGGTAG
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Synonyms
Publications