jgi.p|Nanoce1779_2|587560, mRNA_4699 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587560
Unique NamemRNA_4699
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1095
Alignment locationscaffold_9:422808..423902 -

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Properties
Property NameValue
TranscriptId587646
TrackFilteredModels2
ProteinId587560
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:422808..423902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587560gene_4699Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587560mRNA_4699-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4699CDS_4699Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4699 ID=mRNA_4699|Name=jgi.p|Nanoce1779_2|587560|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
AGGGGGAGGGGAGGGAGGGAGGGACAGGGAGGGGGCTGCTGTTGCCCTCC
AGGAGTGTTGGAGAGGGAACGAGAGCGAGGACGAGGGGGGCCTTGCCCGT
GGATGCGGTCGGGAGTGGAGAAGGGTGGAGAGGGAGGCAGCTGGCGCTAA
CGGCAGTGTCGTCTGCAGCTGGAGCAGGAGTGGGTTTGTTGAGAGGAGAA
AAGGAGGATGGTGGCGGCGACGACCACGATTACGATTCTTGGGGAGACAA
TGACCGAGACGAGGACCAAGAAGTGGTCGATGTGGACGAGGAGGAGGTGG
CAGAGGCGGCTCGTGGGCGCAAGCCTACCCCTCTGGTGGGACGACGACGG
AAGGTGAGACCGACGAGGAGGATGATAAGAATGAGGGGCCCGGCACATGA
GGCGATTATGGAGCTTGGGTCTGCTAGGAGGAGTCCAGGCCGATCTGGCG
GCGGGGATGGCAGCAGTAGTAGCAGTAGCTGGGGGAGGAGGGCGGAATTG
TTTGGGGTGGACCCAGAGGCGACACGACCGGCATACGAGCTCGTCGATGA
GAGCACACGGACGAGGGACTTGAATCTTTTCTTGAAACGAGCGGCGGCTG
AATTGCCAGAGAGGGATATGCAAGTGTTGAGTCTTGTGTATGGGTTGGAA
GGGCAGGTGCCGATGAAGAAAGCGCAAGTAGCAGCAAAGTTGGGCACGTC
TGTGGCGGTGGTGAGTAAAAGTGAGAAGCGGGCATTGAACAAGCTGAGAG
AGATGTTGAACATCAAAGAGGAGGTGTAGAAGGGGAAGGACAGAGGGAGA
GAGGGGAGGAGAGAAAATGACATGCAGTAGTCAATAACCTGTTTGATGAC
GATTGCCGCACAATCAAGTAGGCAGTCGGAAAACAGAAACATCGCGCTGG
AACAAAGCAACGTGGAATGCGTTGAGGAAGAGAGAAGGACGGCGTGCATG
TGTATAATTTTACACACATACAAGTAGGATTTTCTGATGCAGAATAAACA
ACATGTGTAGATAGGCAAAGCGAATAGTTTATTAAAAAGACGAAATCTCA
CCAAAATGTAAGTGGTGCGTTCACATCACAGCGAGAGAAATCCGC
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protein sequence of jgi.p|Nanoce1779_2|587560

>mRNA_4699-protein ID=mRNA_4699-protein|Name=jgi.p|Nanoce1779_2|587560|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MIRMRGPAHEAIMELGSARRSPGRSGGGDGSSSSSSWGRRAELFGVDPEA
TRPAYELVDESTRTRDLNLFLKRAAAELPERDMQVLSLVYGLEGQVPMKK
AQVAAKLGTSVAVVSKSEKRALNKLREMLNIKEEV*
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mRNA from alignment at scaffold_9:422808..423902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4699 ID=mRNA_4699|Name=jgi.p|Nanoce1779_2|587560|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at scaffold_9:422808..423902- (Nannochloropsis oceanica)
AGGGGGAGGGGAGGGAGGGAGGGACAGGGAGGGGGCTGCTGTTGCCCTCC
AGGAGTGTTGGAGAGGGAACGAGAGCGAGGACGAGGGGGGCCTTGCCCGT
GGATGCGGTCGGGAGTGGAGAAGGGTGGAGAGGGAGGCAGCTGGCGCTAA
CGGCAGTGTCGTCTGCAGCTGGAGCAGGAGTGGGTTTGTTGAGAGGAGAA
AAGGAGGATGGTGGCGGCGACGACCACGATTACGATTCTTGGGGAGACAA
TGACCGAGACGAGGACCAAGAAGTGGTCGATGTGGACGAGGAGGAGGTGG
CAGAGGCGGCTCGTGGGCGCAAGCCTACCCCTCTGGTGGGACGACGACGG
AAGGTGAGACCGACGAGGAGGATGATAAGAATGAGGGGCCCGGCACATGA
GGCGATTATGGAGCTTGGGTCTGCTAGGAGGAGTCCAGGCCGATCTGGCG
GCGGGGATGGCAGCAGTAGTAGCAGTAGCTGGGGGAGGAGGGCGGAATTG
TTTGGGGTGGACCCAGAGGCGACACGACCGGCATACGAGCTCGTCGATGA
GAGCACACGGACGAGGGACTTGAATCTTTTCTTGAAACGAGCGGCGGCTG
AATTGCCAGAGAGGGATATGCAAGTGTTGAGTCTTGTGTATGGGTTGGAA
GGGCAGGTGCCGATGAAGAAAGCGCAAGTAGCAGCAAAGTTGGGCACGTC
TGTGGCGGTGGTGAGTAAAAGTGAGAAGCGGGCATTGAACAAGCTGAGAG
AGATGTTGAACATCAAAGAGGAGGTGTAGAAGGGGAAGGACAGAGGGAGA
GAGGGGAGGAGAGAAAATGACATGCAGTAGTCAATAACCTGTTTGATGAC
GATTGCCGCACAATCAAGTAGGCAGTCGGAAAACAGAAACATCGCGCTGG
AACAAAGCAACGTGGAATGCGTTGAGGAAGAGAGAAGGACGGCGTGCATG
TGTATAATTTTACACACATACAAGTAGGATTTTCTGATGCAGAATAAACA
ACATGTGTAGATAGGCAAAGCGAATAGTTTATTAAAAAGACGAAATCTCA
CCAAAATGTAAGTGGTGCGTTCACATCACAGCGAGAGAAATCCGC
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Coding sequence (CDS) from alignment at scaffold_9:422808..423902-

>mRNA_4699 ID=mRNA_4699|Name=jgi.p|Nanoce1779_2|587560|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_9:422808..423902- (Nannochloropsis oceanica)
ATGATAAGAATGAGGGGCCCGGCACATGAGGCGATTATGGAGCTTGGGTC
TGCTAGGAGGAGTCCAGGCCGATCTGGCGGCGGGGATGGCAGCAGTAGTA
GCAGTAGCTGGGGGAGGAGGGCGGAATTGTTTGGGGTGGACCCAGAGGCG
ACACGACCGGCATACGAGCTCGTCGATGAGAGCACACGGACGAGGGACTT
GAATCTTTTCTTGAAACGAGCGGCGGCTGAATTGCCAGAGAGGGATATGC
AAGTGTTGAGTCTTGTGTATGGGTTGGAAGGGCAGGTGCCGATGAAGAAA
GCGCAAGTAGCAGCAAAGTTGGGCACGTCTGTGGCGGTGGTGAGTAAAAG
TGAGAAGCGGGCATTGAACAAGCTGAGAGAGATGTTGAACATCAAAGAGG
AGGTGTAG
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Synonyms
Publications