jgi.p|Nanoce1779_2|587555, mRNA_4698 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587555
Unique Name	mRNA_4698
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1814
Alignment location	scaffold_9:420865..422807 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587641
Track	FilteredModels2
ProteinId	587555

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:420865..422807 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587555	gene_4698	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587555	mRNA_4698-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4698	CDS_4698	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:420865..422807+
coding sequence from alignment at scaffold_9:420865..422807+

mRNA sequence

>mRNA_4698 ID=mRNA_4698|Name=jgi.p|Nanoce1779_2|587555|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp
GCCCCTCCCTATTATAATTACAGTACAGTACGTGTGGTGAGTGACAATCA
ACGTTGGCCCCCAGCAATTGAAGGCATTCAGAATGCTGTGAAAGCGATGA
CGACATGACGTTGAGATGGCGAGAAGACATGCATCATCTGTGATCATAGA
CCACAAAATCACAGATACCTCACAGGCTAAGCCGAGTTAAAGCTCGAGGA
TCAGGCAGCAAGGCGGCGGGGATTCCCAGGCAGCAAGACGACGAGGATAA
GAGCGCCCACGAAGGTAACCTCCTCCCTCATCCTCGCCTGCTTTATCAGT
GGACCCAGCGTCCATGTATGAACTACAATTGGGTGCGGCTGCCCAGTATA
AACAAGCGTGGACAAGCATCTTGGCATCTCCTACCAGCGGCTTACCTATC
TTTAATTGATTTCAGAGCCGCCGTCAATAGCATCCATGGCCTCCGCTGCC
ACTGCCGCCTCTGCCGCGGAAATTGGCGTGCTTGTCATTGGAGGCGGCGC
CGTCGGCTTGTCCGTAGCGGTGAAGCTGGCCGAGAGGCAGATAGGGCGAA
GTGTGCTACTTGTTGAACGGCATGCAAAATTGGGCTTGGAATCAAGCTCG
CATAATAGCGAGGTGATTCATGCATCAGTCTACTACCCACCAAACTCGCT
CAAGGCTCGCCTCTGCCGGCAGGGGAACGATATGATGTACGCCCTATGCA
AAGAAAAAGATATCCCCCACGCGAACATTGGGAAGCTCTTAGTACCCAAA
AGTCAGGTGGAACTTCGGTTGCTACCCCGTATTTTGGCCACGGCTCTGGC
CTCAGGAGGACAAGGTGTTAAATTGGTGAATGAAGATGAGCTTCGGGATT
TGGAGCCGAATGTTAACGCGCCTGCCGCCATTTATTGTCCCACCACTGGT
ATCATTGACAGCCACGCCCTCCTCCAATCCTACGAAACCTCCTTCCTCTC
CTCTGGAGGGGACATTGCGCTTAATGCCGAGGTCGTTGCCATAAAGAAAT
ACCAAGGCTTCCCCGCCTACAAGGTAGAAATAGAAGACGTTGATCTCTCG
TCCCCCAACCGGAAAGTCAAATCCCGTTTTTCTATCCAAGCACGCTCCAT
TGTCAATTGCGCCGGTCTTGGCAGTGCTCGAGTCGCGGCTTTAGCAGGCA
TCGATGTGGATAAGGCCAATTATCGATTGCATCCCACGAAAGGCGTTTAT
TTCCGGGTGCATAAGCAGTTGAATAAATATCCGAAAATGCTGGTTTATCC
GTTACCCATTAACGGTTCCGTTGGTGTTCACACTACGCCTGATCTGCACG
GAGGAATGAGGCTGGGGCCATTGGAAACTTGGTTCCCACAAAGAAAGAAG
GGGGAGGGAGGGAGAGACAGCGTCGAGGATTTCAGTCATCCGGGGAATGA
GAGTTATTATGGGGCGGAGGGGTTGGACTTGTCGGTGGGGGAGGAGATGA
GAGAGAAGTTCGTGGAGTCAGTGAGACCTTTCTTGCCGTTTGTTGAGGCG
ACGGATATAGCGCCGGAGAGCAGTGGGATCCATTCGAAGTTGCAGAGCGA
ACAAGAGACGGGAATGAGGGATTGGGTGATCAAGCATGAGGTAGAGAGGG
GATTAGCCAATTTCTATAATTTGGTTGGGATTGAGTCACCAGGGTTGACG
GCCAGTCCTGCTATAGGGGAGTACGTGGCCCAGCTTGTACATTCTGAATC
GAAATAAGCGATAGAAGAAGAAGGAGCTGGAGGTGGTATGTAGACCGAAA
AGAAAAAGAAATTTGGAGCAAAGAAAGTTGAGGACTACGTACACAGAACA
AACTGATCCTGCTG

protein sequence of jgi.p|Nanoce1779_2|587555

>mRNA_4698-protein ID=mRNA_4698-protein|Name=jgi.p|Nanoce1779_2|587555|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MASAATAASAAEIGVLVIGGGAVGLSVAVKLAERQIGRSVLLVERHAKLG
LESSSHNSEVIHASVYYPPNSLKARLCRQGNDMMYALCKEKDIPHANIGK
LLVPKSQVELRLLPRILATALASGGQGVKLVNEDELRDLEPNVNAPAAIY
CPTTGIIDSHALLQSYETSFLSSGGDIALNAEVVAIKKYQGFPAYKVEIE
DVDLSSPNRKVKSRFSIQARSIVNCAGLGSARVAALAGIDVDKANYRLHP
TKGVYFRVHKQLNKYPKMLVYPLPINGSVGVHTTPDLHGGMRLGPLETWF
PQRKKGEGGRDSVEDFSHPGNESYYGAEGLDLSVGEEMREKFVESVRPFL
PFVEATDIAPESSGIHSKLQSEQETGMRDWVIKHEVERGLANFYNLVGIE
SPGLTASPAIGEYVAQLVHSESK*

mRNA from alignment at scaffold_9:420865..422807+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4698 ID=mRNA_4698|Name=jgi.p|Nanoce1779_2|587555|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_9:420865..422807+ (Nannochloropsis oceanica)
GCCCCTCCCTATTATAATTACAGTACAGTACGTGTGGTGAGTGACAATCA
ACGTTGGCCCCCAGCAATTGAAGGCATTCAGAATGCTGTGAAAGCGATGA
CGACATGACGTTGAGATGGCGAGAAGACATGCATCATCTGTGATCATAGA
CCACAAAATCACAGATACCTCACAGGCTAAGCCGAGTTAAAGCTCGAGGA
TCAGGCAGCAAGGCGGCGGGGATTCCCAGGCAGCAAGACGACGAGGATAA
GAGCGCCCACGAAGGTAACCTCCTCCCTCATCCTCGCCTGCTTTATCAGT
GGACCCAGCGTCCATGTATGAACTACAATTGGGTGCGGCTGCCCAGTATA
AACAAGCGTGGACAAGCATCTTGGCATCTCCTACCAGCGGCTTACCTATC
TTTAATTGATTTCAGAGCCGCCGTCAATAGCATCCATGGCCTCCGCTGCC
ACTGCCGCCTCTGCCGCGGAAATTGGCGTGCTTGTCATTGGAGGCGGCGC
CGTCGGCTTGTCCGTAGCGGTGAAGCTGGCCGAGAGGCAGATAGGGCGAA
GTGTGCTACTTGTTGAACGGCATGCAAAATTGGGCTTGGAATCAAGCTCG
CATAATAGCGAGGTGATTCATGCATCAGTCTACTACCCACCAAACTCGCT
CAAGGCTCGCCTCTGCCGGCAGGGGAACGATATGATGTACGCCCTATGCA
AAGAAAAAGATATCCCCCACGCGAACATTGGGAAGCTCTTAGTACCCAAA
AGTCAGGTGGAACTTCGGTTGCTACCCCGTATTTTGGCCACGGCTCTGGC
CTCAGGAGGACAAGGTGTTAAATTGGTGAATGAAGATGAGCTTCGGGATT
TGGAGCCGAATGTTAACGCGCCTGCCGCCATTTATTGTCCCACCACTGGT
ATCATTGACAGCCACGGTAAGACGTGAGAGGGAAAGTGAGAGTGAGAGCA
GGCTGAAAATAGATGGGCGACTGTGAAAAGGATGGGGGACCAAATTTCTC
ACATCTTTCACGACCCTCCCTCCCCTCTTCCCTCCACCCCGATAGCCCTC
CTCCAATCCTACGAAACCTCCTTCCTCTCCTCTGGAGGGGACATTGCGCT
TAATGCCGAGGTCGTTGCCATAAAGAAATACCAAGGCTTCCCCGCCTACA
AGGTAGAAATAGAAGACGTTGATCTCTCGTCCCCCAACCGGAAAGTCAAA
TCCCGTTTTTCTATCCAAGCACGCTCCATTGTCAATTGCGCCGGTCTTGG
CAGTGCTCGAGTCGCGGCTTTAGCAGGCATCGATGTGGATAAGGCCAATT
ATCGATTGCATCCCACGAAAGGCGTTTATTTCCGGGTGCATAAGCAGTTG
AATAAATATCCGAAAATGCTGGTTTATCCGTTACCCATTAACGGTTCCGT
TGGTGTTCACACTACGCCTGATCTGCACGGAGGAATGAGGCTGGGGCCAT
TGGAAACTTGGTTCCCACAAAGAAAGAAGGGGGAGGGAGGGAGAGACAGC
GTCGAGGATTTCAGTCATCCGGGGAATGAGAGTTATTATGGGGCGGAGGG
GTTGGACTTGTCGGTGGGGGAGGAGATGAGAGAGAAGTTCGTGGAGTCAG
TGAGACCTTTCTTGCCGTTTGTTGAGGCGACGGATATAGCGCCGGAGAGC
AGTGGGATCCATTCGAAGTTGCAGAGCGAACAAGAGACGGGAATGAGGGA
TTGGGTGATCAAGCATGAGGTAGAGAGGGGATTAGCCAATTTCTATAATT
TGGTTGGGATTGAGTCACCAGGGTTGACGGCCAGTCCTGCTATAGGGGAG
TACGTGGCCCAGCTTGTACATTCTGAATCGAAATAAGCGATAGAAGAAGA
AGGAGCTGGAGGTGGTATGTAGACCGAAAAGAAAAAGAAATTTGGAGCAA
AGAAAGTTGAGGACTACGTACACAGAACAAACTGATCCTGCTG

Coding sequence (CDS) from alignment at scaffold_9:420865..422807+

>mRNA_4698 ID=mRNA_4698|Name=jgi.p|Nanoce1779_2|587555|organism=Nannochloropsis oceanica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_9:420865..422807+ (Nannochloropsis oceanica)
ATGGCCTCCGCTGCCACTGCCGCCTCTGCCGCGGAAATTGGCGTGCTTGT
CATTGGAGGCGGCGCCGTCGGCTTGTCCGTAGCGGTGAAGCTGGCCGAGA
GGCAGATAGGGCGAAGTGTGCTACTTGTTGAACGGCATGCAAAATTGGGC
TTGGAATCAAGCTCGCATAATAGCGAGGTGATTCATGCATCAGTCTACTA
CCCACCAAACTCGCTCAAGGCTCGCCTCTGCCGGCAGGGGAACGATATGA
TGTACGCCCTATGCAAAGAAAAAGATATCCCCCACGCGAACATTGGGAAG
CTCTTAGTACCCAAAAGTCAGGTGGAACTTCGGTTGCTACCCCGTATTTT
GGCCACGGCTCTGGCCTCAGGAGGACAAGGTGTTAAATTGGTGAATGAAG
ATGAGCTTCGGGATTTGGAGCCGAATGTTAACGCGCCTGCCGCCATTTAT
TGTCCCACCACTGGTATCATTGACAGCCACGCCCTCCTCCAATCCTACGA
AACCTCCTTCCTCTCCTCTGGAGGGGACATTGCGCTTAATGCCGAGGTCG
TTGCCATAAAGAAATACCAAGGCTTCCCCGCCTACAAGGTAGAAATAGAA
GACGTTGATCTCTCGTCCCCCAACCGGAAAGTCAAATCCCGTTTTTCTAT
CCAAGCACGCTCCATTGTCAATTGCGCCGGTCTTGGCAGTGCTCGAGTCG
CGGCTTTAGCAGGCATCGATGTGGATAAGGCCAATTATCGATTGCATCCC
ACGAAAGGCGTTTATTTCCGGGTGCATAAGCAGTTGAATAAATATCCGAA
AATGCTGGTTTATCCGTTACCCATTAACGGTTCCGTTGGTGTTCACACTA
CGCCTGATCTGCACGGAGGAATGAGGCTGGGGCCATTGGAAACTTGGTTC
CCACAAAGAAAGAAGGGGGAGGGAGGGAGAGACAGCGTCGAGGATTTCAG
TCATCCGGGGAATGAGAGTTATTATGGGGCGGAGGGGTTGGACTTGTCGG
TGGGGGAGGAGATGAGAGAGAAGTTCGTGGAGTCAGTGAGACCTTTCTTG
CCGTTTGTTGAGGCGACGGATATAGCGCCGGAGAGCAGTGGGATCCATTC
GAAGTTGCAGAGCGAACAAGAGACGGGAATGAGGGATTGGGTGATCAAGC
ATGAGGTAGAGAGGGGATTAGCCAATTTCTATAATTTGGTTGGGATTGAG
TCACCAGGGTTGACGGCCAGTCCTGCTATAGGGGAGTACGTGGCCCAGCT
TGTACATTCTGAATCGAAATAAATGGCCTCCGCTGCCACTGCCGCCTCTG
CCGCGGAAATTGGCGTGCTTGTCATTGGAGGCGGCGCCGTCGGCTTGTCC
GTAGCGGTGAAGCTGGCCGAGAGGCAGATAGGGCGAAGTGTGCTACTTGT
TGAACGGCATGCAAAATTGGGCTTGGAATCAAGCTCGCATAATAGCGAGG
TGATTCATGCATCAGTCTACTACCCACCAAACTCGCTCAAGGCTCGCCTC
TGCCGGCAGGGGAACGATATGATGTACGCCCTATGCAAAGAAAAAGATAT
CCCCCACGCGAACATTGGGAAGCTCTTAGTACCCAAAAGTCAGGTGGAAC
TTCGGTTGCTACCCCGTATTTTGGCCACGGCTCTGGCCTCAGGAGGACAA
GGTGTTAAATTGGTGAATGAAGATGAGCTTCGGGATTTGGAGCCGAATGT
TAACGCGCCTGCCGCCATTTATTGTCCCACCACTGGTATCATTGACAGCC
ACGCCCTCCTCCAATCCTACGAAACCTCCTTCCTCTCCTCTGGAGGGGAC
ATTGCGCTTAATGCCGAGGTCGTTGCCATAAAGAAATACCAAGGCTTCCC
CGCCTACAAGGTAGAAATAGAAGACGTTGATCTCTCGTCCCCCAACCGGA
AAGTCAAATCCCGTTTTTCTATCCAAGCACGCTCCATTGTCAATTGCGCC
GGTCTTGGCAGTGCTCGAGTCGCGGCTTTAGCAGGCATCGATGTGGATAA
GGCCAATTATCGATTGCATCCCACGAAAGGCGTTTATTTCCGGGTGCATA
AGCAGTTGAATAAATATCCGAAAATGCTGGTTTATCCGTTACCCATTAAC
GGTTCCGTTGGTGTTCACACTACGCCTGATCTGCACGGAGGAATGAGGCT
GGGGCCATTGGAAACTTGGTTCCCACAAAGAAAGAAGGGGGAGGGAGGGA
GAGACAGCGTCGAGGATTTCAGTCATCCGGGGAATGAGAGTTATTATGGG
GCGGAGGGGTTGGACTTGTCGGTGGGGGAGGAGATGAGAGAGAAGTTCGT
GGAGTCAGTGAGACCTTTCTTGCCGTTTGTTGAGGCGACGGATATAGCGC
CGGAGAGCAGTGGGATCCATTCGAAGTTGCAGAGCGAACAAGAGACGGGA
ATGAGGGATTGGGTGATCAAGCATGAGGTAGAGAGGGGATTAGCCAATTT
CTATAATTTGGTTGGGATTGAGTCACCAGGGTTGACGGCCAGTCCTGCTA
TAGGGGAGTACGTGGCCCAGCTTGTACATTCTGAATCGAAATAA

Synonyms

Publications