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Properties
| Property Name | Value |
|---|
| TranscriptId | 587639 |
| Track | FilteredModels2 |
| ProteinId | 587553 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:418439..420877 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4697 ID=mRNA_4697|Name=jgi.p|Nanoce1779_2|587553|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp
AATAGGGAGGGGCAGAAGCGGTGCCTTGAGCGGGAGCCTTGTTCCTTGAT
GCCAGAAGCTGCGCTCGGGAGAGGGAGCGTAGCGCACGCAGCATCATCAT
CATCATCGTCAGCCCAGAAACCCAGAACCCGCACGTGCCTTCAACAGCAC
AGCCATAACCCCCGGCGTCCTCAAGCATGAGCGGTCCCTCTTTCCATGGC
ATCTCCATGCTGGGAGCCAACAAGAAAATACCAAACCCTGTTGTTTCTTC
CGCGTCTCCCTCTTCTCCCAAAGACTCCACCATCCGGAAGGGCTTCGAGG
CCGCAAAACACGCAGTGGAGCACGATGAGAATGGTCGTGTCGACGAGGCT
TTTCCTCTCTACCAGGAAGCGGTGGCTTATCTGCTTGAGGCTGTTAGGCA
AGGCAAAGGTGATGGCGAGCAAATCAAACGAGCGGCCAATTCTTACTTGA
CGAGGGCCGAGGAGCTAAGCCTGGTGCTCGATCGAAGAAAACGAGAGGGC
GTGATTCACACAAGACGTATAAGTGCACCGCCAGCGGCGGCAAGATCAGG
AGCAGCAGCACATAGACCAAGCAAGCCAGATGATTATGACTATACAGGAG
GAAGAGCGGCGAGATGCCGTGGGGGTGCTGGTGCTGCCGCAGGGGGCCGA
GAGGTAGTAGGACGGGGTGGAGTTTCAACAGGATCAGGGGCATGCAAAGC
TGTCAATAGCGGTAGGCGTGGTTTCCGTGGACCTGCGAGTGAGCAGGAAA
TGCTGGTGATGGGAGAGGTGTTGGATCGGTCGTCTCGAGTGACTTGGGAG
CAGATTGCGGGCTTGGAGGACGCTAAGCGAACATTGCAAGAAGCGGTGGT
GCTGCCTAATCTCCGTCCAGATCTTTTCAAGGGGTTGAGGGCCCCACCAA
GAGGTGTGCTTTTGTTTGGTCCTCCAGGCACGGGTAAAACCCTCCTAGCC
AAGGCCGTGGCGAGCGAGACAGGTTTCGCCTTTTTCTCCATCAGCGCCTC
GTCCCTCGTCAGCAAGTACGTGGGGGAAGGAGAGAAGATGGTTCGCGCTC
TCTTTTCCGTCGCCCGAAAGCAGCAGCCTTCCATTATTTTTGTCGATGAG
ATTGAGAGCATGCTGGGCCAACGGAATGAGAAAGAGCACGAGGCGAGTCG
CCGATTAAAAACAGAGTTTTTGGTCCAGCTTGATGGAGCAGGCACGGACA
GCGAGGATCATATCTTGGTTATGGGGGCGACGAATCTGCCATGGGCATTA
GACGAGGCGGTTCTTCGACGCTTGGCCAAGAAGGTGTTTATTCCTCTCCC
TGATAAAGTGACGCGGGAGGCCTTGCTCAAGAACCTGTTAAAAAGCCAGC
GACATGCCCTCAAGGCACCACAAGTCACCCAGCTGGTCGAGCTTACAGCG
GGATACAGCTGCAGTGATGTGGCACAAGTGGCCAAAGACGCGGCAATGGG
CCCAATACGAGAAGTGGGGAGCTCGGCTTTGCGGACCGTGAAGGAAGAGC
ATTTACGACCGATTTCTTTTGAGGACTTTAGTCGTGCGTTGCAGTCCATT
AGGCCGAGTGTATCACAGGCCACAGTGCAGGCATTCGACATGTACATGAA
AGACAATGGATATACATGAGGCAGGGTCATTTTTGGTCGATAGAATAAGA
AAAAATGGAAATGATGGTTGTTACATTCCTCTATTGGTTCGTTCCTTGCA
CCGCGCCCTGTCTCGTGCTCTGAACGTGCGACTATTGAAAAAATCAACAC
CGTAGGATCATCTCGTATCACTCTCTGGTCTGTGTGCGTGTGCTTGGATG
TCGCACTTTTACCTGGGCACTGTATCAGACGAGACGTTGCTTGAGGCAGC
CCAGAAGGAAGCTCTGGAAAAGGACCCGGAGTGGTACCAATCCTCTGTTG
GCGGAACGTTCATCTTTGAATGACACGGCAACAAGAGGCCAATTCCAAAT
ACTTTCTTTGTTTTGCTATCTGATTCTACAGCTGAACCAACCCCGGGGTG
CCTCCGGCCCCCAGACTTCCCCTCTCATCCTCAGCACGCTGCCGCGGCTC
TCTGTGCTCTTGAGGGGAGGTTGAGACGGCAGAAGAATGCCGCCACATGT
TGCTATATAACACGACGCTCAGGAATGGTGCCGCGTAGGTGTCAGTTCCC
AACTTCGAGGTCTGGCAAACTCTTGCACAATGGCTGTCCTCTCATTATCT
TCTGTTTGTCTTTGTGATGCATATCTCTGACTGCTCGCCATACATCTCGT
TGACTTTCTGCCCTTGCTCCTGTACCGCACACATC back to topprotein sequence of jgi.p|Nanoce1779_2|587553 >mRNA_4697-protein ID=mRNA_4697-protein|Name=jgi.p|Nanoce1779_2|587553|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MSGPSFHGISMLGANKKIPNPVVSSASPSSPKDSTIRKGFEAAKHAVEHD
ENGRVDEAFPLYQEAVAYLLEAVRQGKGDGEQIKRAANSYLTRAEELSLV
LDRRKREGVIHTRRISAPPAAARSGAAAHRPSKPDDYDYTGGRAARCRGG
AGAAAGGREVVGRGGVSTGSGACKAVNSGRRGFRGPASEQEMLVMGEVLD
RSSRVTWEQIAGLEDAKRTLQEAVVLPNLRPDLFKGLRAPPRGVLLFGPP
GTGKTLLAKAVASETGFAFFSISASSLVSKYVGEGEKMVRALFSVARKQQ
PSIIFVDEIESMLGQRNEKEHEASRRLKTEFLVQLDGAGTDSEDHILVMG
ATNLPWALDEAVLRRLAKKVFIPLPDKVTREALLKNLLKSQRHALKAPQV
TQLVELTAGYSCSDVAQVAKDAAMGPIREVGSSALRTVKEEHLRPISFED
FSRALQSIRPSVSQATVQAFDMYMKDNGYT* back to topmRNA from alignment at scaffold_9:418439..420877- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4697 ID=mRNA_4697|Name=jgi.p|Nanoce1779_2|587553|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp|location=Sequence derived from alignment at scaffold_9:418439..420877- (Nannochloropsis oceanica)
AATAGGGAGGGGCAGAAGCGGTGCCTTGAGCGGGAGCCTTGTTCCTTGAT
GCCAGAAGCTGCGCTCGGGAGAGGGAGCGTAGCGCACGCAGCATCATCAT
CATCATCGTCAGCCCAGAAACCCAGAACCCGCACGTGCCTTCAACAGCAC
AGCCATAACCCCCGGCGTCCTCAAGCATGAGCGGTCCCTCTTTCCATGGC
ATCTCCATGCTGGGAGCCAACAAGAAAATACCAAACCCTGTTGTTTCTTC
CGCGTCTCCCTCTTCTCCCAAAGACTCCACCATCCGGAAGGGCTTCGAGG
CCGCAAAACACGCAGTGGAGCACGATGAGAATGGTCGTGTCGACGAGGCT
TTTCCTCTCTACCAGGAAGCGGTGGCTTATCTGCTTGAGGCTGTTAGGCA
AGGCAAAGGTGATGGCGAGCAAATCAAACGAGCGGCCAATTCTTACTTGA
CGAGGGCCGAGGAGCTAAGCCTGGTGCTCGATCGAAGAAAACGAGAGGGC
GTGATTCACACAAGACGTATAAGTGCACCGCCAGCGGCGGCAAGATCAGG
AGCAGCAGCACATAGACCAAGCAAGCCAGATGATTATGACTATACAGGAG
GAAGAGCGGCGAGATGCCGTGGGGGTGCTGGTGCTGCCGCAGGGGGCCGA
GAGGTAGTAGGACGGGGTGGAGTTTCAACAGGATCAGGGGCATGCAAAGC
TGTCAATAGCGGTAGGCGTGGTTTCCGTGGACCTGCGAGTGAGCAGGAAA
TGCTGGTGATGGGAGAGGTGTTGGATCGGTCGTCTCGAGTGACTTGGGAG
CAGATTGCGGGCTTGGAGGACGCTAAGCGAACATTGCAAGAAGCGGTGGT
GCTGCCTAATCTCCGTCCAGATCTTTTCAAGGGGTTGAGGGCCCCACCAA
GAGGTGTGCTTTTGTTTGGGTACGCGCTGGGAGGAAAGAGGGGAGAGAGC
GAGGGAGGGAGGATTTGTTTGGGTAAGGCTTCGGAAATGAGCGGTCACGA
ACGAACAAACATCTTATTCATTCGTTCCTTTCTTTAATACATAAAATTCT
TTCTCTCTTCATTACGAATACAGTCCTCCAGGCACGGGTAAAACCCTCCT
AGCCAAGGCCGTGGCGAGCGAGACAGGTTTCGCCTTTTTCTCCATCAGCG
CCTCGTCCCTCGTCAGCAAGTACGTGGGGGAAGGAGAGAAGATGGTTCGC
GCTCTCTTTTCCGTCGCCCGAAAGCAGCAGCCTTCCATTATTTTTGTCGA
TGAGATTGAGAGCATGCTGGGCCAACGGAATGAGAAAGAGCACGAGGCGA
GTCGCCGATTAAAAACAGAGTTTTTGGTCCAGCTTGATGGAGCAGGCACG
GACAGCGAGGATCATATCTTGGTTATGGGGGCGACGAATCTGCCATGGGC
ATTAGACGAGGCGGTTCTTCGACGCTTGGCCAAGAAGGTGTTTATTCCTC
TCCCTGATAAAGTGACGCGGGAGGCCTTGCTCAAGAACCTGTTAAAAAGC
CAGCGACATGCCCTCAAGGCACCACAAGTCACCCAGCTGGTCGAGCTTAC
AGCGGGATACAGCTGCAGTGATGTGGCACAAGTGGCCAAAGACGCGGCAA
TGGGCCCAATACGAGAAGTGGGGAGCTCGGCTTTGCGGACCGTGAAGGAA
GAGCATTTACGACCGATTTCTTTTGAGGACTTTAGTCGTGCGTTGCAGTC
CATTAGGCCGAGTGTATCACAGGCCACAGTGCAGGCATTCGACATGTACA
TGAAAGACAATGGATATACATGAGGCAGGGTCATTTTTGGTCGATAGAAT
AAGAAAAAATGGAAATGATGGTTGTTACATTCCTCTATTGGTTCGTTCCT
TGCACCGCGCCCTGTCTCGTGCTCTGAACGTGCGACTATTGAAAAAATCA
ACACCGTAGGATCATCTCGTATCACTCTCTGGTCTGTGTGCGTGTGCTTG
GATGTCGCACTTTTACCTGGGCACTGTATCAGACGAGACGTTGCTTGAGG
CAGCCCAGAAGGAAGCTCTGGAAAAGGACCCGGAGTGGTACCAATCCTCT
GTTGGCGGAACGTTCATCTTTGAATGACACGGCAACAAGAGGCCAATTCC
AAATACTTTCTTTGTTTTGCTATCTGATTCTACAGCTGAACCAACCCCGG
GGTGCCTCCGGCCCCCAGACTTCCCCTCTCATCCTCAGCACGCTGCCGCG
GCTCTCTGTGCTCTTGAGGGGAGGTTGAGACGGCAGAAGAATGCCGCCAC
ATGTTGCTATATAACACGACGCTCAGGAATGGTGCCGCGTAGGTGTCAGT
TCCCAACTTCGAGGTCTGGCAAACTCTTGCACAATGGCTGTCCTCTCATT
ATCTTCTGTTTGTCTTTGTGATGCATATCTCTGACTGCTCGCCATACATC
TCGTTGACTTTCTGCCCTTGCTCCTGTACCGCACACATC back to topCoding sequence (CDS) from alignment at scaffold_9:418439..420877- >mRNA_4697 ID=mRNA_4697|Name=jgi.p|Nanoce1779_2|587553|organism=Nannochloropsis oceanica|type=CDS|length=2886bp|location=Sequence derived from alignment at scaffold_9:418439..420877- (Nannochloropsis oceanica)
GTCCTCCAGGCACGGGTAAAACCCTCCTAGCCAAGGCCGTGGCGAGCGAG
ACAGGTTTCGCCTTTTTCTCCATCAGCGCCTCGTCCCTCGTCAGCAAGTA
CGTGGGGGAAGGAGAGAAGATGGTTCGCGCTCTCTTTTCCGTCGCCCGAA
AGCAGCAGCCTTCCATTATTTTTGTCGATGAGATTGAGAGCATGCTGGGC
CAACGGAATGAGAAAGAGCACGAGGCGAGTCGCCGATTAAAAACAGAGTT
TTTGGTCCAGCTTGATGGAGCAGGCACGGACAGCGAGGATCATATCTTGG
TTATGGGGGCGACGAATCTGCCATGGGCATTAGACGAGGCGGTTCTTCGA
CGCTTGGCCAAGAAGGTGTTTATTCCTCTCCCTGATAAAGTGACGCGGGA
GGCCTTGCTCAAGAACCTGTTAAAAAGCCAGCGACATGCCCTCAAGGCAC
CACAAGTCACCCAGCTGGTCGAGCTTACAGCGGGATACAGCTGCAGTGAT
GTGGCACAAGTGGCCAAAGACGCGGCAATGGGCCCAATACGAGAAGTGGG
GAGCTCGGCTTTGCGGACCGTGAAGGAAGAGCATTTACGACCGATTTCTT
TTGAGGACTTTAGTCGTGCGTTGCAGTCCATTAGGCCGAGTGTATCACAG
GCCACAGTGCAGGCATTCGACATGTACATGAAAGACAATGGATATACATG
AATGAGCGGTCCCTCTTTCCATGGCATCTCCATGCTGGGAGCCAACAAGA
AAATACCAAACCCTGTTGTTTCTTCCGCGTCTCCCTCTTCTCCCAAAGAC
TCCACCATCCGGAAGGGCTTCGAGGCCGCAAAACACGCAGTGGAGCACGA
TGAGAATGGTCGTGTCGACGAGGCTTTTCCTCTCTACCAGGAAGCGGTGG
CTTATCTGCTTGAGGCTGTTAGGCAAGGCAAAGGTGATGGCGAGCAAATC
AAACGAGCGGCCAATTCTTACTTGACGAGGGCCGAGGAGCTAAGCCTGGT
GCTCGATCGAAGAAAACGAGAGGGCGTGATTCACACAAGACGTATAAGTG
CACCGCCAGCGGCGGCAAGATCAGGAGCAGCAGCACATAGACCAAGCAAG
CCAGATGATTATGACTATACAGGAGGAAGAGCGGCGAGATGCCGTGGGGG
TGCTGGTGCTGCCGCAGGGGGCCGAGAGGTAGTAGGACGGGGTGGAGTTT
CAACAGGATCAGGGGCATGCAAAGCTGTCAATAGCGGTAGGCGTGGTTTC
CGTGGACCTGCGAGTGAGCAGGAAATGCTGGTGATGGGAGAGGTGTTGGA
TCGGTCGTCTCGAGTGACTTGGGAGCAGATTGCGGGCTTGGAGGACGCTA
AGCGAACATTGCAAGAAGCGGTGGTGCTGCCTAATCTCCGTCCAGATCTT
TTCAAGGGGTTGAGGGCCCCACCAAGAGGTGTGCTTTTGTTTGGTCCTCC
AGGCACGGGTAAAACCCTCCTAGCCAAGGCCGTGGCGAGCGAGACAGGTT
TCGCCTTTTTCTCCATCAGCGCCTCGTCCCTCGTCAGCAAGTACGTGGGG
GAAGGAGAGAAGATGGTTCGCGCTCTCTTTTCCGTCGCCCGAAAGCAGCA
GCCTTCCATTATTTTTGTCGATGAGATTGAGAGCATGCTGGGCCAACGGA
ATGAGAAAGAGCACGAGGCGAGTCGCCGATTAAAAACAGAGTTTTTGGTC
CAGCTTGATGGAGCAGGCACGGACAGCGAGGATCATATCTTGGTTATGGG
GGCGACGAATCTGCCATGGGCATTAGACGAGGCGGTTCTTCGACGCTTGG
CCAAGAAGGTGTTTATTCCTCTCCCTGATAAAGTGACGCGGGAGGCCTTG
CTCAAGAACCTGTTAAAAAGCCAGCGACATGCCCTCAAGGCACCACAAGT
CACCCAGCTGGTCGAGCTTACAGCGGGATACAGCTGCAGTGATGTGGCAC
AAGTGGCCAAAGACGCGGCAATGGGCCCAATACGAGAAGTGGGGAGCTCG
GCTTTGCGGACCGTGAAGGAAGAGCATTTACGACCGATTTCTTTTGAGGA
CTTTAGTCGTGCGTTGCAGTCCATTAGGCCGAGTGTATCACAGGCCACAG
TGCAGGCATTCGACATGTACATGAAAGACAATGGATATACATGAATGAGC
GGTCCCTCTTTCCATGGCATCTCCATGCTGGGAGCCAACAAGAAAATACC
AAACCCTGTTGTTTCTTCCGCGTCTCCCTCTTCTCCCAAAGACTCCACCA
TCCGGAAGGGCTTCGAGGCCGCAAAACACGCAGTGGAGCACGATGAGAAT
GGTCGTGTCGACGAGGCTTTTCCTCTCTACCAGGAAGCGGTGGCTTATCT
GCTTGAGGCTGTTAGGCAAGGCAAAGGTGATGGCGAGCAAATCAAACGAG
CGGCCAATTCTTACTTGACGAGGGCCGAGGAGCTAAGCCTGGTGCTCGAT
CGAAGAAAACGAGAGGGCGTGATTCACACAAGACGTATAAGTGCACCGCC
AGCGGCGGCAAGATCAGGAGCAGCAGCACATAGACCAAGCAAGCCAGATG
ATTATGACTATACAGGAGGAAGAGCGGCGAGATGCCGTGGGGGTGCTGGT
GCTGCCGCAGGGGGCCGAGAGGTAGTAGGACGGGGTGGAGTTTCAACAGG
ATCAGGGGCATGCAAAGCTGTCAATAGCGGTAGGCGTGGTTTCCGTGGAC
CTGCGAGTGAGCAGGAAATGCTGGTGATGGGAGAGGTGTTGGATCGGTCG
TCTCGAGTGACTTGGGAGCAGATTGCGGGCTTGGAGGACGCTAAGCGAAC
ATTGCAAGAAGCGGTGGTGCTGCCTAATCTCCGTCCAGATCTTTTCAAGG
GGTTGAGGGCCCCACCAAGAGGTGTGCTTTTGTTTG back to top
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