jgi.p|Nanoce1779_2|440767, mRNA_4696 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|440767
Unique NamemRNA_4696
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1168
Alignment locationscaffold_9:417333..418830 -

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Properties
Property NameValue
TranscriptId440853
TrackFilteredModels2
ProteinId440767
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:417333..418830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|440767gene_4696Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|440767mRNA_4696-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4696CDS_4696Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4696 ID=mRNA_4696|Name=jgi.p|Nanoce1779_2|440767|organism=Nannochloropsis oceanica|type=mRNA|length=1168bp
TCTGTTGGCGGAACGTTCATCTTTGAATGACACGGCAACAAGAGGCCAAT
TCCAAATACTTTCTTTGTTTTGCTATCTGATTCTACAGCTGAACCAACCC
CGGGGTGCCTCCGGCCCCCAGACTTCCCCTCTCATCCTCAGCACGCTGCC
GCGGCTCTCTGTGCTCTTGAGGGGAGGTTGAGACGGCAGAAGAATGCCGC
CACATGTTGCTATATAACACGACGCTCAGGAATGGTGCCGCGTAGGTGTC
AGTTCCCAACTTCGAGTCTGTCACATGCCCTCGTTGCCCTCTCATCAATA
CCGCCGTTCTCTTCTCTGCATCGTCTTATTTATCTTGACTAAGTCAACTA
CATGTGATCCCGCCTTGCGCGGCTTTGTCCGAGAAGGAGTAGTTCATGAT
CAGCAGCAGCGGCCAGAGTGGAAGGAGGGCCACGCTTCGTCTGCTTCGTC
TAAGAACCTTGAATCTGGCACCATTATCGCCGTGGATGGATATGCTACTG
GCCGAAATGCTCTGCATTTTAGCACTCAAAATTTTACTTCTGCCTCTGAA
CTTGCCCATGAGCACGAATCTGACGGCACCACGGACGCGACTGCAGACGC
CATAGTAAGGGAGCTGCAGCAAACTAGCGTCCAGGCTTACATGAATGACA
ACCAAAGCGGGACTCGCTTAGAAGGTCTTGGAACTACGGGTATCACTGGA
CCTACGACGCATTTACCCCAAATCGCTCACTCTCCTGTTACTGGCGGTAC
GGGGGGGGTCCTCTTCGGTGGTGGCGCTCAGTCGGGTACTCCAGGAGTTG
CTGGTGGTACATTCCCGAATCCTGCTGGCGAGTCAGGGGTATCTACAGGT
GGCACCGGAGTTGGCGGTTCCCCGACCGGCTTGGGTACCACGGCGGGAAC
TATTGGAGGAGCCCCTGTGGGAGAGGGACTCGTGGGACCTTCGGGTCTGC
CTGCACCCATCGCTACGCCTGGGGGCGTTGGATCCGTCGGCGGACTTGGA
GGTCGTATTTAGAGTGCTGGCAGGTGATGATTGTGGTGCGGATCAAGATG
GTTGAAGCATAGACGGACAAGAGACAGCTTGGGGCAAAGTCTCAAAATGT
CCGCCGACCTGTAGATCACCATCAGGTATCAAGGCTCCAAAGACGTGGCG
ATGATATCGACTTAAAAT
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protein sequence of jgi.p|Nanoce1779_2|440767

>mRNA_4696-protein ID=mRNA_4696-protein|Name=jgi.p|Nanoce1779_2|440767|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPSLPSHQYRRSLLCIVLFILTKSTTCDPALRGFVREGVVHDQQQRPEWK
EGHASSASSKNLESGTIIAVDGYATGRNALHFSTQNFTSASELAHEHESD
GTTDATADAIVRELQQTSVQAYMNDNQSGTRLEGLGTTGITGPTTHLPQI
AHSPVTGGTGGVLFGGGAQSGTPGVAGGTFPNPAGESGVSTGGTGVGGSP
TGLGTTAGTIGGAPVGEGLVGPSGLPAPIATPGGVGSVGGLGGRI*
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mRNA from alignment at scaffold_9:417333..418830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4696 ID=mRNA_4696|Name=jgi.p|Nanoce1779_2|440767|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp|location=Sequence derived from alignment at scaffold_9:417333..418830- (Nannochloropsis oceanica)
TCTGTTGGCGGAACGTTCATCTTTGAATGACACGGCAACAAGAGGCCAAT
TCCAAATACTTTCTTTGTTTTGCTATCTGATTCTACAGCTGAACCAACCC
CGGGGTGCCTCCGGCCCCCAGACTTCCCCTCTCATCCTCAGCACGCTGCC
GCGGCTCTCTGTGCTCTTGAGGGGAGGTTGAGACGGCAGAAGAATGCCGC
CACATGTTGCTATATAACACGACGCTCAGGAATGGTGCCGCGTAGGTGTC
AGTTCCCAACTTCGAGGTCTGGCAAACTCTTGCACAATGGCTGTCCTCTC
ATTATCTTCTGTTTGTCTTTGTGATGCATATCTCTGACTGCTCGCCATAC
ATCTCGTTGACTTTCTGCCCTTGCTCCTGTACCGCACACATCGAACAGTC
TGTCACATGCCCTCGTTGCCCTCTCATCAATACCGCCGTTCTCTTCTCTG
CATCGTCTTATTTATCTTGACTAAGTCAACTACATGTGATCCCGCCTTGC
GCGGCTTTGTCCGAGAAGGAGTAGTTCATGATCAGCAGCAGCGGCCAGAG
TGGAAGGAGGGCCACGCTTCGTCTGCTTCGTCTAAGAACCTTGAATCTGG
CACCATTATCGCCGTGGATGGATATGCTACTGGCCGAAATGCTCTGCATT
TTAGCACTCAAAATTTTACTTCTGCCTCTGAACTTGCCCATGAGCACGAA
TCTGACGGCACCACGGACGCGACTGCAGACGCCATAGTAAGGGAGCTGCA
GCAAACTAGCGTCCAGGCTTACATGAATGACAACCAAAGCGGGACTCGCT
TAGAAGGTCTTGGAACTACGGGTATCACTGGACCTACGACGCATTTACCC
CAAATCGCTCACTCTCCTGTTACTGGCGGTACGGGGGGGGTCCTCTTCGG
TGGTGGCGCTCAGTCGGGTACTCCAGGAGTTGCTGGTGGTACATTCCCGA
ATCCTGGTACGTTTGAAGGGAACTTGCGTTAAGGTGGTTTAAACACTCTT
GATCTCCCTTGCCTGACCCAAGCTTTGCACGTTCATCTGTACAGCTGGCG
AGTCAGGGGTATCTACAGGTGGCACCGGAGTTGGCGGTTCCCCGACCGGC
TTGGGTACCACGGCGGGAACTATTGGAGGAGCCCCTGTGGGAGAGGGACT
CGTGGGACCTTCGTAAGTAATATTTGTGTCCCTGAATGTATCCTCTCTTT
CTGGCCATGCTGAGAGGGCGTAACGTGTGAAATGCTCAGCGTATATTCAC
TTTCCTTGTTTACATTTCCGAGGGGTCTGCCTGCACCCATCGCTACGCCT
GGGGGCGTTGGATCCGTCGGCGGACTTGGAGGTCGTATTTAGAGTGCTGG
CAGGTGATGATTGTGGTGCGGATCAAGATGGTTGAAGCATAGACGGACAA
GAGACAGCTTGGGGCAAAGTCTCAAAATGTCCGCCGACCTGTAGATCACC
ATCAGGTATCAAGGCTCCAAAGACGTGGCGATGATATCGACTTAAAAT
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Coding sequence (CDS) from alignment at scaffold_9:417333..418830-

>mRNA_4696 ID=mRNA_4696|Name=jgi.p|Nanoce1779_2|440767|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_9:417333..418830- (Nannochloropsis oceanica)
GGGTCTGCCTGCACCCATCGCTACGCCTGGGGGCGTTGGATCCGTCGGCG
GACTTGGAGGTCGTATTTAGCTGGCGAGTCAGGGGTATCTACAGGTGGCA
CCGGAGTTGGCGGTTCCCCGACCGGCTTGGGTACCACGGCGGGAACTATT
GGAGGAGCCCCTGTGGGAGAGGGACTCGTGGGACCTTCATGCCCTCGTTG
CCCTCTCATCAATACCGCCGTTCTCTTCTCTGCATCGTCTTATTTATCTT
GACTAAGTCAACTACATGTGATCCCGCCTTGCGCGGCTTTGTCCGAGAAG
GAGTAGTTCATGATCAGCAGCAGCGGCCAGAGTGGAAGGAGGGCCACGCT
TCGTCTGCTTCGTCTAAGAACCTTGAATCTGGCACCATTATCGCCGTGGA
TGGATATGCTACTGGCCGAAATGCTCTGCATTTTAGCACTCAAAATTTTA
CTTCTGCCTCTGAACTTGCCCATGAGCACGAATCTGACGGCACCACGGAC
GCGACTGCAGACGCCATAGTAAGGGAGCTGCAGCAAACTAGCGTCCAGGC
TTACATGAATGACAACCAAAGCGGGACTCGCTTAGAAGGTCTTGGAACTA
CGGGTATCACTGGACCTACGACGCATTTACCCCAAATCGCTCACTCTCCT
GTTACTGGCGGTACGGGGGGGGTCCTCTTCGGTGGTGGCGCTCAGTCGGG
TACTCCAGGAGTTGCTGGTGGTACATTCCCGAATCCTGGGGTCTGCCTGC
ACCCATCGCTACGCCTGGGGGCGTTGGATCCGTCGGCGGACTTGGAGGTC
GTATTTAGCTGGCGAGTCAGGGGTATCTACAGGTGGCACCGGAGTTGGCG
GTTCCCCGACCGGCTTGGGTACCACGGCGGGAACTATTGGAGGAGCCCCT
GTGGGAGAGGGACTCGTGGGACCTTCATGCCCTCGTTGCCCTCTCATCAA
TACCGCCGTTCTCTTCTCTGCATCGTCTTATTTATCTTGACTAAGTCAAC
TACATGTGATCCCGCCTTGCGCGGCTTTGTCCGAGAAGGAGTAGTTCATG
ATCAGCAGCAGCGGCCAGAGTGGAAGGAGGGCCACGCTTCGTCTGCTTCG
TCTAAGAACCTTGAATCTGGCACCATTATCGCCGTGGATGGATATGCTAC
TGGCCGAAATGCTCTGCATTTTAGCACTCAAAATTTTACTTCTGCCTCTG
AACTTGCCCATGAGCACGAATCTGACGGCACCACGGACGCGACTGCAGAC
GCCATAGTAAGGGAGCTGCAGCAAACTAGCGTCCAGGCTTACATGAATGA
CAACCAAAGCGGGACTCGCTTAGAAGGTCTTGGAACTACGGGTATCACTG
GACCTACGACGCATTTACCCCAAATCGCTCACTCTCCTGTTACTGGCGGT
ACGGGGGGGGTCCTCTTCGGTGGTGGCGCTCAGTCGGGTACTCCAGGAGT
TGCTGGTGGTACATTCCCGAATCCTGGGGTCTGCCTGCACCCATCGCTAC
GCCTGGGGGCGTTGGATCCGTCGGCGGACTTGGAGGTCGTATTTAGCTGG
CGAGTCAGGGGTATCTACAGGTGGCACCGGAGTTGGCGGTTCCCCGACCG
GCTTGGGTACCACGGCGGGAACTATTGGAGGAGCCCCTGTGGGAGAGGGA
CTCGTGGGACCTTCATGCCCTCGTTGCCCTCTCATCAATACCGCCGTTCT
CTTCTCTGCATCGTCTTATTTATCTTGACTAAGTCAACTACATGTGATCC
CGCCTTGCGCGGCTTTGTCCGAGAAGGAGTAGTTCATGATCAGCAGCAGC
GGCCAGAGTGGAAGGAGGGCCACGCTTCGTCTGCTTCGTCTAAGAACCTT
GAATCTGGCACCATTATCGCCGTGGATGGATATGCTACTGGCCGAAATGC
TCTGCATTTTAGCACTCAAAATTTTACTTCTGCCTCTGAACTTGCCCATG
AGCACGAATCTGACGGCACCACGGACGCGACTGCAGACGCCATAGTAAGG
GAGCTGCAGCAAACTAGCGTCCAGGCTTACATGAATGACAACCAAAGCGG
GACTCGCTTAGAAGGTCTTGGAACTACGGGTATCACTGGACCTACGACGC
ATTTACCCCAAATCGCTCACTCTCCTGTTACTGGCGGTACGGGGGGGGTC
CTCTTCGGTGGTGGCGCTCAGTCGGGTACTCCAGGAGTTGCTGGTGGTAC
ATTCCCGAATCCTG
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Synonyms
Publications