jgi.p|Nanoce1779_2|587546, mRNA_4695 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587546
Unique Name	mRNA_4695
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1972
Alignment location	scaffold_9:414165..416255 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587632
Track	FilteredModels2
ProteinId	587546

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:414165..416255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587546	gene_4695	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587546	mRNA_4695-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4695	CDS_4695	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:414165..416255+
coding sequence from alignment at scaffold_9:414165..416255+

mRNA sequence

>mRNA_4695 ID=mRNA_4695|Name=jgi.p|Nanoce1779_2|587546|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp
GAGGGAGGGAGTTCTGACAGGCCTGGCGGCGGCGGTCGATGGCCTTACGG
CGAGGGCGGCTCCTGCTGCTGCTGCTGCGACGGAAGAAAGACAGAAGGAA
TTGGAGGAGAAGGGGGGCGAGGGAAATTGTGAAGATCAGGTAAAGGCAGA
GGAGAGTGAGAGGAATCAAAGGGAAGTGCGTATGCTTTCAGACCTACTTT
TGGAAGTCCTGTTGATTCTAGCGCAGCCCCTCGCAAATACCCGCACGGCT
CTCCATGCGCACCAACTGGCACAGCAGAAGATCACCAGCACCTCTTCGTG
CAGCAATTTTTTGGCACGTCCCCCGGATCTCTCATTACCCGAGAGAGAGG
CCTTGGAGGCTCAGCTACTGCTGGAGAAGCTTGTCGTCGCATGGACAAGC
CAATCAGCTGCGTCGATGACTTCATCTTCCTCTTTCCTATCTCGAAGCGT
GCATTTCACGCCAGCCATTATCCTCATGCGGGCCTTGACGAGGGAAACGA
CCACACCGAAGAACGCTGGAGCTGCGGCGTTACTCCTGGAAGCGGCAGGA
GAATGGGAAGGAGCCCTACAGATCCGCTTGGACGAAATAGTGAAAATCAC
GACTAGATGTGAGAAAGATGTTGATGTGGAGCAAGCGTGTAATGAGGAGG
CCATTGAGGCGCTCCTTCGGCTGCTTCAGAGCCATGTGTTATTGCGCGAG
GACACTCTTCAATGGACTATTCGCAAGCGAATGGCGGCCAAGTTGCTTGA
GAGCTGGGCCCGTTTGGGACTTTCGCCTGATCGGCTGGAAAACGTCATCT
TGCCCTCGGTTGATGACAAGGCGAGGAATGCTGCGGGTGTCTCTTCCTGG
GCATGGCATATGGGCGTGGCCCTATTGACAGACCTTCTCATACTCCATGC
AGGTGCACCAGGCAGCCTCGTCGACGCAGACGGCGCGCTAGTGGTGCATG
GAAGCCACCCCGTTCGTTTTTCTTCTTCCTTTCATGTGCGTCTCACCGAG
CACGTCAAAACTCACGGTCAAGCGATGCAGCAAGCGGGGGTCATGGACCT
TTGGAGCACCGGCGGGCGTGCCCCAGCATTACTGCGCATCCCTAGACCTA
CTGCTGCTTTGTGGGATGCTCTGTATAAACAAATTCAGAGTTTGGAGGAA
GGGCAAGCTGCGTCGAATCGTATTGAAGTACCCCTGCAGCGGTTGCTGGA
CGCGATGTCCCGGGACAGGAGTGGTGGTTACGGTAGGAGTAGTGGTAATG
GTTATGACGGGGACAAGCATGACATAAATGGCCCTTCTTCAAGAACTGGG
GTAAGGCGTCTCCTGGGCCCTGTGAGGTTGGCAGGGAGGTGGGCCGGAGA
CGAACGAGGGGAGGGGGTCTCTATTCTAGCTTTCAGCTGTGGGCATGTCC
TCAGTCAAATCGAGCTTCTTGAGCATTTCGTGCCTGCCTTGGAAAGTAAG
TTAAAGGCGCTTGACCGACCGTTGCATCTCACTACCGAGATATTGATTCA
GGAGTACCGGGCCTTGACGGGGTCGGGGATTGATGTTGGTGGTGGTGGTG
GGATGGGAGGGGGGTCGCACCAGGGCATTTCACTGGCCTGCCCGTCATGT
GTCACGGCCTTCATGGTTGATGTTGTGAATCAGCAAGAGCAGTAAACTAA
ATGAAAATGTACAGAATCAGCGTGTATAGACTAAAACGAGTTCAAGGGTA
ATGTACAGACTAAAAGAGTGAAAACAGCGTACATCTTCCTTTAATTGTTT
TTTGTCTGCTCATTTTTTCGCTTTACTTGAGCCCACAACCCCTGGCCCCT
GGTCCTGGTGAGACAGTGCGACTAGGTAGGCCTGAGGGTCCGACGAGTCC
CTCGCCCACAGAGGATTCTCCAATCGTGTCCGTCGTGGTTCCCAAGCTGA
TTAAGGAATAGCCACCTGTACAGATAGATGTATGAAAGTCGTGTCAGACA
AAAGAATCGAAAAATAGAGAGC

protein sequence of jgi.p|Nanoce1779_2|587546

>mRNA_4695-protein ID=mRNA_4695-protein|Name=jgi.p|Nanoce1779_2|587546|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MLSDLLLEVLLILAQPLANTRTALHAHQLAQQKITSTSSCSNFLARPPDL
SLPEREALEAQLLLEKLVVAWTSQSAASMTSSSSFLSRSVHFTPAIILMR
ALTRETTTPKNAGAAALLLEAAGEWEGALQIRLDEIVKITTRCEKDVDVE
QACNEEAIEALLRLLQSHVLLREDTLQWTIRKRMAAKLLESWARLGLSPD
RLENVILPSVDDKARNAAGVSSWAWHMGVALLTDLLILHAGAPGSLVDAD
GALVVHGSHPVRFSSSFHVRLTEHVKTHGQAMQQAGVMDLWSTGGRAPAL
LRIPRPTAALWDALYKQIQSLEEGQAASNRIEVPLQRLLDAMSRDRSGGY
GRSSGNGYDGDKHDINGPSSRTGVRRLLGPVRLAGRWAGDERGEGVSILA
FSCGHVLSQIELLEHFVPALESKLKALDRPLHLTTEILIQEYRALTGSGI
DVGGGGGMGGGSHQGISLACPSCVTAFMVDVVNQQEQ*

mRNA from alignment at scaffold_9:414165..416255+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4695 ID=mRNA_4695|Name=jgi.p|Nanoce1779_2|587546|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at scaffold_9:414165..416255+ (Nannochloropsis oceanica)
GAGGGAGGGAGTTCTGACAGGCCTGGCGGCGGCGGTCGATGGCCTTACGG
CGAGGGCGGCTCCTGCTGCTGCTGCTGCGACGGAAGAAAGACAGAAGGAA
TTGGAGGAGAAGGGGGGCGAGGGAAATTGTGAAGATCAGGTAAAGGCAGA
GGAGAGTGAGAGGAATCAAAGGGAAGTGCGTATGCTTTCAGACCTACTTT
TGGAAGTCCTGTTGATTCTAGCGCAGCCCCTCGCAAATACCCGCACGGCT
CTCCATGCGCACCAACTGGCACAGCAGAAGATCACCAGCACCTCTTCGTG
CAGCAATTTTTTGGCACGTCCCCCGGATCTCTCATTACCCGAGAGAGAGG
CCTTGGAGGCTCAGCTACTGCTGGAGAAGCTTGTCGTCGCATGGACAAGC
CAATCAGCTGCGTCGATGACTTCATCTTCCTCTTTCCTATCTCGAAGCGT
GCATTTCACGCCAGCCATTATCCTCATGCGGGCCTTGACGAGGGAAACGA
CCACACCGAAGAACGCTGGAGCTGCGGCGTTACTCCTGGAAGCGGCAGGA
GAATGGGAAGGAGCCCTACAGATCCGCTTGGACGAAATAGTGAAAATCAC
GACTAGATGTGAGAAAGATGTTGATGTGGAGCAAGCGTGTAATGAGGAGG
CCATTGAGGCGCTCCTTCGGCTGCTTCAGAGCCATGTGTTATTGCGCGAG
GACACTCTTCAATGGACTATTCGCAAGCGAATGGCGGCCAAGTTGCTTGA
GAGCTGGGCCCGTTTGGGACTTTCGCCTGATCGGCTGGAAAACGTCATCT
TGCCCTCGGTTGATGACAAGGCGAGGAATGCTGCGGGTGTCTCTTCCTGG
GCATGGCATATGGGCGTGGCCCTATTGACAGACCTTCTCATACTCCATGC
AGGTGCACCAGGCAGCCTCGTCGACGCAGACGGCGCGCTAGTGGTGCATG
GAAGCCACCCCGTTCGTTTTTCTTCTTCCTTTCATGTGCGTCTCACCGAG
CACGTCAAAACTCACGGTCAAGCGATGCAGCAAGCGGGGGTCATGGACCT
TTGGAGCACCGGCGGGCGTGCCCCAGCATTACTGCGCATCCCTAGACCTA
CTGCTGCTTTGTGGGATGCTCTGTATAAACAAATTCAGAGTTTGGAGGAA
GGGCAAGCTGCGTCGAATCGTATTGAAGTACCCCTGCAGCGGTTGCTGGA
CGCGATGTCCCGGGACAGGAGTGGTGGTTACGGTAGGAGTAGTGGTAATG
GTTATGACGGGGACAAGCATGACATAAATGGCCCTTCTTCAAGAACTGGG
GTAAGGCGTCTCCTGGGCCCTGTGAGGTTGGCAGGGAGGTGGGCCGGAGA
CGAACGAGGGGAGGGGGTCTCTATTCTAGCTTTCAGCTGTGGGCATGTCC
TCAGTCAAATCGAGCTTCTTGAGCATTTCGTGCCTGCCTTGGAAAGTAAG
TTAAAGGCGCTTGACCGACCGTTGCATCTCACTACCGAGATATTGATTCA
GGAGTACCGGGCCTTGACGGGGTCGGGGATTGATGTTGGTGGTGGTGGTG
GGATGGGAGGGGGGTCGCACCAGGGCATTTCACTGGCCTGCCCGTCATGT
GTCACGGCCTTCATGGTTGATGTTGTGAATCAGCAAGAGCAGTAAACTAA
ATGAAAATGTACAGAATCAGCGTGTATAGACTAAAACGAGTTCAAGGGTA
ATGTACAGACTAAAAGAGTGAAAACAGCGTACATCTTCCTTTAATTGTTT
TTTGTCTGCTCATTTTTTCGCTTTACTTGAGCCCACAACCCCTGGCCCCT
GGTCCTGGTGAGACAGTGCGACTAGGTAGGCCTCTAAAATATGCGTAAAT
TGATACGTGTGCGAAGAGAAAAAAGAGTCGAGAGTATAATAACTTGCGTG
TCAAGTTAACACAGAGGTTAGGGGTGGGTTTATATTGTCACTTTTCACTT
ACGAGGGTCCGACGAGTCCCTCGCCCACAGAGGATTCTCCAATCGTGTCC
GTCGTGGTTCCCAAGCTGATTAAGGAATAGCCACCTGTACAGATAGATGT
ATGAAAGTCGTGTCAGACAAAAGAATCGAAAAATAGAGAGC

Coding sequence (CDS) from alignment at scaffold_9:414165..416255+

>mRNA_4695 ID=mRNA_4695|Name=jgi.p|Nanoce1779_2|587546|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_9:414165..416255+ (Nannochloropsis oceanica)
ATGCTTTCAGACCTACTTTTGGAAGTCCTGTTGATTCTAGCGCAGCCCCT
CGCAAATACCCGCACGGCTCTCCATGCGCACCAACTGGCACAGCAGAAGA
TCACCAGCACCTCTTCGTGCAGCAATTTTTTGGCACGTCCCCCGGATCTC
TCATTACCCGAGAGAGAGGCCTTGGAGGCTCAGCTACTGCTGGAGAAGCT
TGTCGTCGCATGGACAAGCCAATCAGCTGCGTCGATGACTTCATCTTCCT
CTTTCCTATCTCGAAGCGTGCATTTCACGCCAGCCATTATCCTCATGCGG
GCCTTGACGAGGGAAACGACCACACCGAAGAACGCTGGAGCTGCGGCGTT
ACTCCTGGAAGCGGCAGGAGAATGGGAAGGAGCCCTACAGATCCGCTTGG
ACGAAATAGTGAAAATCACGACTAGATGTGAGAAAGATGTTGATGTGGAG
CAAGCGTGTAATGAGGAGGCCATTGAGGCGCTCCTTCGGCTGCTTCAGAG
CCATGTGTTATTGCGCGAGGACACTCTTCAATGGACTATTCGCAAGCGAA
TGGCGGCCAAGTTGCTTGAGAGCTGGGCCCGTTTGGGACTTTCGCCTGAT
CGGCTGGAAAACGTCATCTTGCCCTCGGTTGATGACAAGGCGAGGAATGC
TGCGGGTGTCTCTTCCTGGGCATGGCATATGGGCGTGGCCCTATTGACAG
ACCTTCTCATACTCCATGCAGGTGCACCAGGCAGCCTCGTCGACGCAGAC
GGCGCGCTAGTGGTGCATGGAAGCCACCCCGTTCGTTTTTCTTCTTCCTT
TCATGTGCGTCTCACCGAGCACGTCAAAACTCACGGTCAAGCGATGCAGC
AAGCGGGGGTCATGGACCTTTGGAGCACCGGCGGGCGTGCCCCAGCATTA
CTGCGCATCCCTAGACCTACTGCTGCTTTGTGGGATGCTCTGTATAAACA
AATTCAGAGTTTGGAGGAAGGGCAAGCTGCGTCGAATCGTATTGAAGTAC
CCCTGCAGCGGTTGCTGGACGCGATGTCCCGGGACAGGAGTGGTGGTTAC
GGTAGGAGTAGTGGTAATGGTTATGACGGGGACAAGCATGACATAAATGG
CCCTTCTTCAAGAACTGGGGTAAGGCGTCTCCTGGGCCCTGTGAGGTTGG
CAGGGAGGTGGGCCGGAGACGAACGAGGGGAGGGGGTCTCTATTCTAGCT
TTCAGCTGTGGGCATGTCCTCAGTCAAATCGAGCTTCTTGAGCATTTCGT
GCCTGCCTTGGAAAGTAAGTTAAAGGCGCTTGACCGACCGTTGCATCTCA
CTACCGAGATATTGATTCAGGAGTACCGGGCCTTGACGGGGTCGGGGATT
GATGTTGGTGGTGGTGGTGGGATGGGAGGGGGGTCGCACCAGGGCATTTC
ACTGGCCTGCCCGTCATGTGTCACGGCCTTCATGGTTGATGTTGTGAATC
AGCAAGAGCAGTAA

Synonyms

Publications