jgi.p|Nanoce1779_2|587545, mRNA_4694 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587545
Unique Name	mRNA_4694
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3946
Alignment location	scaffold_9:410337..414282 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587631
Track	FilteredModels2
ProteinId	587545

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:410337..414282 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587545	gene_4694	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587545	mRNA_4694-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4694	CDS_4694	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:410337..414282-
coding sequence from alignment at scaffold_9:410337..414282-

mRNA sequence

>mRNA_4694 ID=mRNA_4694|Name=jgi.p|Nanoce1779_2|587545|organism=Nannochloropsis oceanica|type=mRNA|length=3946bp
GCCCCCCTTCTCCTCCAATTCCTTCTGTCTTTCTTCCGTCGCAGCAGCAG
CAGCAGGAGCCGCCCTCGCCGTAAGGCCATCGACCGCCGCCGCCAGGCCT
GTCAGAACTCCCTCCCTCGAAGACCACGCCGCAATCAGCGGTACTCCCCG
CGCGCCGCACTCTTCCTTCTCTTGGGGGGCAGCAGCCGCTACTACCAGGC
GCGGACTCATGGGCAGAGGGGGGGGTGGCTTACGGGCGGGGAGTGGCCCT
AGGCCAAGCCAGTAGGAGAGTTGGAGGACGAGAGTGCCGACATAGGGATG
AGGTAGGCTAGGGAGGGTGGCTAAGAGCCATTGATACTGCTCGCGGAGAA
GGAGGAGGTGGGGATCTGACAGCAAAATATCGAGTTTAAGTCGCAGGGGC
AGGACAGCCCAGAGGATGCAACGGCCTGCTTGGATAATGCATTTTCCGGC
GCCGACTCCGCAGAGCCACGCGACATCGCTTCGACTCAAAGGCATAAATA
AGCGTGCAGAGGAGATCGACGCAGACAAGGGTGAGGAGGAGGTTGTAGGC
GAAGCAGAAGAGGCCATAGCGGCTAAACAATCCAAGGTCTTGGACAAACC
AGACACTTTCTCTCGGGCCCAGCTCGCAAACAAAGCCTCAGAGACGCGCC
GTCGTACCAGTAGCAACGCCACCACTTTGTCCAAGTGGTAGTCTGGACAG
GCCTCTAGGAATATTAACAGATCCTCCTTGGTCCATCCCGCGGGGGCTCT
CTCTCCCGCCATTACCATCCATCGCACGCACTGCAGGGCGACTCGAGCTC
GCCCTAGACCACCAGCCATAAGCCAGGGATCGGCTCCTTTCAATCGTTTA
AAATACTCTGGGTGAAGGGTGGGCCCTTTGGGTGCAACGTTGCTGCCGTC
GTCGAGGTCACAAAGGAGAAGGCTCCACGCCAGCGTTAGAGCCTCGTTAA
CCTTCCCGTCCTTCCCCAAGTTCATGACAAAAGTCACCATCTCCCCTGGA
GACAGTGCATGGGCCTGAAGAGAGGAAGGGAGGAAGGAAGGCAAGGGGAA
ATCAGGCAAAGCAAAGCCTCCTCGCCTCCCAGGGCGTGGTGAGGAGGACA
TGGTCTCCTCCTCCTTATTCGCTAGCAGGCGGAGCAAGAAGATGCTGCAG
CGGCTCCAGACCACCAAAGACCAAGCCAAAACGTTGTCGGGTCCTGTGGT
GCTGGAGCTTGGCGTCATTATCGATGGCAGAAACATGCGGAAGCGTGCCA
AGTTCAGGATGTCGCGGATGTCCGGTTTGACGGGTACCAGCCAGCCCAAG
AAGGACAGAGGGGCTTTGGTCGGCGACTGGAAGGCCCGCAGCAACGGAGA
GATCGGAGGACCGACGGATGCGCTGCTGTATACGTCATCATCATTCTTAT
CTTGGGGCAGCCGGTAGGTCAACAGCCAGAACGATGAGGAGGAAAGTCCG
TCTTGATTCTCGCCGATGTCCTCCACCCATGCTCCCGCAGGTCCTCCCTC
CTGCCGACGACAGGCAGCCACGGAAAGCACCAAATACTTTTCCGGCATCA
GGTTTGCCTCAATGACACGGCTCGCGCACACCTCCCCTAACGTACTACTG
CTCTTTCCCGTCATTCTATCCATCGCATCCAAGTCCTCCGCCAGCGCCAT
TTGACACAGGCACCGACAGGCCGGAGCTGCTGCTGCTGTTGCTGTTGCTG
GTGTTGCTCCTTCTTCTCTCCCACCGCCACCGCTTCTGGCAAGGGCGCAA
TAATGCACTTCCACCGTCAAGCCCCGCCCACAAGGACTAAGTCGACTCAG
CACTAACCCGAAAGCCTCCAGCCCTCCTTGCTCCTTCCCCCTCTCCTTCG
ATATGGACTGAACCGCAGTCACGACTTTCGTGTCCTCCCACCAGCCAGAA
GGAAGGCGAGCGGCAGCACCACCACCATCACCACCACTGCCTTCTGCTGC
TGCTCCACCGTCTGCTCTCCACAACGAGCATGGCGTCTCGAAGCACGTAT
GGATGTGTGGGTGCCTGGATTGGTCTAAAGAAGACGAATAAGAAGGTCGA
GCAAAACATCGATCCCACAGCGACTCGGCCTCCACTTCATCTTGCCTCCC
GTCCATCCTACTACTATAGCTATCCTTCAACGCCCCCAATCTGCTTCCTT
TTCCATCTCCGCCTGCTTCTTGCTCCTTCTCTCCGCCTCCGCCGCTGCTC
CCTTTCCTCTTCCCCGTCTTGCGGCCACGTTGAGGTGGGGTAAGCAAGAG
GCTGCCGATGGATTGCGTGGAGGTAGAGGGGGATGAGACCTCGATAGTGG
TCGTGGAGTGTGGAGAGGGGCGGGGGGGGGTCATGGGTGAGGGGGGAGGT
AGTCCCAGGGTAGCTGCTCGAGGGTAATTCATTCTTTGGTTTTGGGGTGT
AAAGGACGAGGAGGAGGGAGAGCCTGAGTGTCGGCGATTGCTGCCACTGG
GTCGAGAAGGAGAGGGGCTGTCTTGCTGTTGCTGTTGGTGTTGGTGATGG
TTCACCATTGGGGACAGAGGAGCCACGGGGTCGGTGGGTGATTCGAGGGC
TAGAGAATAAAGTCGGCCGCTCGCCAAGGTAATGAGTAAAATGCGTTGTT
GCAATGGCGAGTCTTTCCCGCTTCTGCCATTACAATTGCCGCCGACTGTA
TGTATCTGCAATGCCACTACACCATGATTATATTCATCTTCCTCTTCTCC
CTCGATCAAAGAAAAGGGGACGTACAGCAAGTCAACCTCCCTCTCTTGGT
CCATGTCTAAAATCGACAACGCGCCCCTCCCTCCACTCGTCCCTCCAACA
ATAGCCATACTGCTACAAGCCGTAAGCGACTCTACCCCTTCTCCTCGCTT
CGTAGTGCCCTTCGCAGGCGTCCACCACACGCAGCAGCGGGGAACAAACT
CCCCTTCGGCACTCATGGAGCCCAACGAAATGTCCTTGGCCCGCCGCTGC
GCACCACCTCCCCCGCTTCCTCCCCCAACACCACTACCAGAGCTAACACC
TAGTCCTCCACCGCCAGAAGATATCTGCAGAGATCCAGCTCCATCTCGCT
GGTATTTGGGGTCTAATGAGAAATCGAACAAAGAGGGGCCGAGCGGATTG
AAGCGCTGCTGCTGCTGTTTGTCGGCGCTGCTGTTTGCTTTCCTTTGCTC
CAGGGCATTTTCATTTCTGTCGGACTGCCCCAACTGCTGGTTTTCTTTTC
CCACCTTTGATGTCGAAGCATTGCTAGTAGTGACCTCGTCTCGTTCGTGG
TCGTACACCCGACGTGCCGCCGTGACCATCTGCCGGACATGCAACACATA
CGCATTCCCTTCCCGCGTCACACAGAGCAAGCGTCGCAAATCTTCGCTTA
ATGCCAAGCAGGCAATCGTATTCGATGGTCCCCTCCCTGAAAAAAGTCTT
CCGCCACTCCCGCTGTGGCTCCTCCCACCCCCTCCGTTGGTGCCGCTGCT
TCTGCCGCCGCTGGTGGGGAGGATGGGCCATTCGTACATATAGTCCCCTT
CTTTAACGCCCCCGCATCCCTCTAGTGATGCCCAAGCATTTCCCGACATT
CGTAGAAGCAGGCTTGGCTGCCGCGTGCTTAATGCTAAGATCGTGATGCG
GGCGTCTGCTTCGGGGTGCCGGCCCTGGATAGCGCAAGAGACCTCAAAGC
TGGCAGCACGGGGCTGGGCTTGTGCTTGGGCCTGGAGCGCGGAGCGGGGG
TAGCAGGCCGAAGTGTTGTCGCACCAGGCATTGGCCACGTGTACGTAGCG
TTCTAGCATAATGAGGGCTTGGGAAGGTGGTGGCGGCAGTGGTAGTTGGA
CATGGGGTGGTGGTAAAGAGGATGGCGAGGGGAGAGCAGGAGGCTGGGAA
TGCTGTGATGTGTCGACCGCGAGCCGTGGTGGTGGTATTGTGGAGGAGTT
GTGCCCATGCCCACGACGGCTTTTTTTCTTGCCCATGGACTGTTGT

protein sequence of jgi.p|Nanoce1779_2|587545

>mRNA_4694-protein ID=mRNA_4694-protein|Name=jgi.p|Nanoce1779_2|587545|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MSKIDNAPLPPLVPPTIAILLQAVSDSTPSPRFVVPFAGVHHTQQRGTNS
PSALMEPNEMSLARRCAPPPPLPPPTPLPELTPSPPPPEDICRDPAPSRW
YLGSNEKSNKEGPSGLKRCCCCLSALLFAFLCSRAFSFLSDCPNCWFSFP
TFDVEALLVVTSSRSWSYTRRAAVTICRTCNTYAFPSRVTQSKRRKSSLN
AKQAIVFDGPLPEKSLPPLPLWLLPPPPLVPLLLPPLVGRMGHSYI*

mRNA from alignment at scaffold_9:410337..414282-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4694 ID=mRNA_4694|Name=jgi.p|Nanoce1779_2|587545|organism=Nannochloropsis oceanica|type=mRNA|length=3946bp|location=Sequence derived from alignment at scaffold_9:410337..414282- (Nannochloropsis oceanica)
GCCCCCCTTCTCCTCCAATTCCTTCTGTCTTTCTTCCGTCGCAGCAGCAG
CAGCAGGAGCCGCCCTCGCCGTAAGGCCATCGACCGCCGCCGCCAGGCCT
GTCAGAACTCCCTCCCTCGAAGACCACGCCGCAATCAGCGGTACTCCCCG
CGCGCCGCACTCTTCCTTCTCTTGGGGGGCAGCAGCCGCTACTACCAGGC
GCGGACTCATGGGCAGAGGGGGGGGTGGCTTACGGGCGGGGAGTGGCCCT
AGGCCAAGCCAGTAGGAGAGTTGGAGGACGAGAGTGCCGACATAGGGATG
AGGTAGGCTAGGGAGGGTGGCTAAGAGCCATTGATACTGCTCGCGGAGAA
GGAGGAGGTGGGGATCTGACAGCAAAATATCGAGTTTAAGTCGCAGGGGC
AGGACAGCCCAGAGGATGCAACGGCCTGCTTGGATAATGCATTTTCCGGC
GCCGACTCCGCAGAGCCACGCGACATCGCTTCGACTCAAAGGCATAAATA
AGCGTGCAGAGGAGATCGACGCAGACAAGGGTGAGGAGGAGGTTGTAGGC
GAAGCAGAAGAGGCCATAGCGGCTAAACAATCCAAGGTCTTGGACAAACC
AGACACTTTCTCTCGGGCCCAGCTCGCAAACAAAGCCTCAGAGACGCGCC
GTCGTACCAGTAGCAACGCCACCACTTTGTCCAAGTGGTAGTCTGGACAG
GCCTCTAGGAATATTAACAGATCCTCCTTGGTCCATCCCGCGGGGGCTCT
CTCTCCCGCCATTACCATCCATCGCACGCACTGCAGGGCGACTCGAGCTC
GCCCTAGACCACCAGCCATAAGCCAGGGATCGGCTCCTTTCAATCGTTTA
AAATACTCTGGGTGAAGGGTGGGCCCTTTGGGTGCAACGTTGCTGCCGTC
GTCGAGGTCACAAAGGAGAAGGCTCCACGCCAGCGTTAGAGCCTCGTTAA
CCTTCCCGTCCTTCCCCAAGTTCATGACAAAAGTCACCATCTCCCCTGGA
GACAGTGCATGGGCCTGAAGAGAGGAAGGGAGGAAGGAAGGCAAGGGGAA
ATCAGGCAAAGCAAAGCCTCCTCGCCTCCCAGGGCGTGGTGAGGAGGACA
TGGTCTCCTCCTCCTTATTCGCTAGCAGGCGGAGCAAGAAGATGCTGCAG
CGGCTCCAGACCACCAAAGACCAAGCCAAAACGTTGTCGGGTCCTGTGGT
GCTGGAGCTTGGCGTCATTATCGATGGCAGAAACATGCGGAAGCGTGCCA
AGTTCAGGATGTCGCGGATGTCCGGTTTGACGGGTACCAGCCAGCCCAAG
AAGGACAGAGGGGCTTTGGTCGGCGACTGGAAGGCCCGCAGCAACGGAGA
GATCGGAGGACCGACGGATGCGCTGCTGTATACGTCATCATCATTCTTAT
CTTGGGGCAGCCGGTAGGTCAACAGCCAGAACGATGAGGAGGAAAGTCCG
TCTTGATTCTCGCCGATGTCCTCCACCCATGCTCCCGCAGGTCCTCCCTC
CTGCCGACGACAGGCAGCCACGGAAAGCACCAAATACTTTTCCGGCATCA
GGTTTGCCTCAATGACACGGCTCGCGCACACCTCCCCTAACGTACTACTG
CTCTTTCCCGTCATTCTATCCATCGCATCCAAGTCCTCCGCCAGCGCCAT
TTGACACAGGCACCGACAGGCCGGAGCTGCTGCTGCTGTTGCTGTTGCTG
GTGTTGCTCCTTCTTCTCTCCCACCGCCACCGCTTCTGGCAAGGGCGCAA
TAATGCACTTCCACCGTCAAGCCCCGCCCACAAGGACTAAGTCGACTCAG
CACTAACCCGAAAGCCTCCAGCCCTCCTTGCTCCTTCCCCCTCTCCTTCG
ATATGGACTGAACCGCAGTCACGACTTTCGTGTCCTCCCACCAGCCAGAA
GGAAGGCGAGCGGCAGCACCACCACCATCACCACCACTGCCTTCTGCTGC
TGCTCCACCGTCTGCTCTCCACAACGAGCATGGCGTCTCGAAGCACGTAT
GGATGTGTGGGTGCCTGGATTGGTCTAAAGAAGACGAATAAGAAGGTCGA
GCAAAACATCGATCCCACAGCGACTCGGCCTCCACTTCATCTTGCCTCCC
GTCCATCCTACTACTATAGCTATCCTTCAACGCCCCCAATCTGCTTCCTT
TTCCATCTCCGCCTGCTTCTTGCTCCTTCTCTCCGCCTCCGCCGCTGCTC
CCTTTCCTCTTCCCCGTCTTGCGGCCACGTTGAGGTGGGGTAAGCAAGAG
GCTGCCGATGGATTGCGTGGAGGTAGAGGGGGATGAGACCTCGATAGTGG
TCGTGGAGTGTGGAGAGGGGCGGGGGGGGGTCATGGGTGAGGGGGGAGGT
AGTCCCAGGGTAGCTGCTCGAGGGTAATTCATTCTTTGGTTTTGGGGTGT
AAAGGACGAGGAGGAGGGAGAGCCTGAGTGTCGGCGATTGCTGCCACTGG
GTCGAGAAGGAGAGGGGCTGTCTTGCTGTTGCTGTTGGTGTTGGTGATGG
TTCACCATTGGGGACAGAGGAGCCACGGGGTCGGTGGGTGATTCGAGGGC
TAGAGAATAAAGTCGGCCGCTCGCCAAGGTAATGAGTAAAATGCGTTGTT
GCAATGGCGAGTCTTTCCCGCTTCTGCCATTACAATTGCCGCCGACTGTA
TGTATCTGCAATGCCACTACACCATGATTATATTCATCTTCCTCTTCTCC
CTCGATCAAAGAAAAGGGGACGTACAGCAAGTCAACCTCCCTCTCTTGGT
CCATGTCTAAAATCGACAACGCGCCCCTCCCTCCACTCGTCCCTCCAACA
ATAGCCATACTGCTACAAGCCGTAAGCGACTCTACCCCTTCTCCTCGCTT
CGTAGTGCCCTTCGCAGGCGTCCACCACACGCAGCAGCGGGGAACAAACT
CCCCTTCGGCACTCATGGAGCCCAACGAAATGTCCTTGGCCCGCCGCTGC
GCACCACCTCCCCCGCTTCCTCCCCCAACACCACTACCAGAGCTAACACC
TAGTCCTCCACCGCCAGAAGATATCTGCAGAGATCCAGCTCCATCTCGCT
GGTATTTGGGGTCTAATGAGAAATCGAACAAAGAGGGGCCGAGCGGATTG
AAGCGCTGCTGCTGCTGTTTGTCGGCGCTGCTGTTTGCTTTCCTTTGCTC
CAGGGCATTTTCATTTCTGTCGGACTGCCCCAACTGCTGGTTTTCTTTTC
CCACCTTTGATGTCGAAGCATTGCTAGTAGTGACCTCGTCTCGTTCGTGG
TCGTACACCCGACGTGCCGCCGTGACCATCTGCCGGACATGCAACACATA
CGCATTCCCTTCCCGCGTCACACAGAGCAAGCGTCGCAAATCTTCGCTTA
ATGCCAAGCAGGCAATCGTATTCGATGGTCCCCTCCCTGAAAAAAGTCTT
CCGCCACTCCCGCTGTGGCTCCTCCCACCCCCTCCGTTGGTGCCGCTGCT
TCTGCCGCCGCTGGTGGGGAGGATGGGCCATTCGTACATATAGTCCCCTT
CTTTAACGCCCCCGCATCCCTCTAGTGATGCCCAAGCATTTCCCGACATT
CGTAGAAGCAGGCTTGGCTGCCGCGTGCTTAATGCTAAGATCGTGATGCG
GGCGTCTGCTTCGGGGTGCCGGCCCTGGATAGCGCAAGAGACCTCAAAGC
TGGCAGCACGGGGCTGGGCTTGTGCTTGGGCCTGGAGCGCGGAGCGGGGG
TAGCAGGCCGAAGTGTTGTCGCACCAGGCATTGGCCACGTGTACGTAGCG
TTCTAGCATAATGAGGGCTTGGGAAGGTGGTGGCGGCAGTGGTAGTTGGA
CATGGGGTGGTGGTAAAGAGGATGGCGAGGGGAGAGCAGGAGGCTGGGAA
TGCTGTGATGTGTCGACCGCGAGCCGTGGTGGTGGTATTGTGGAGGAGTT
GTGCCCATGCCCACGACGGCTTTTTTTCTTGCCCATGGACTGTTGT

Coding sequence (CDS) from alignment at scaffold_9:410337..414282-

>mRNA_4694 ID=mRNA_4694|Name=jgi.p|Nanoce1779_2|587545|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_9:410337..414282- (Nannochloropsis oceanica)
ATGTCTAAAATCGACAACGCGCCCCTCCCTCCACTCGTCCCTCCAACAAT
AGCCATACTGCTACAAGCCGTAAGCGACTCTACCCCTTCTCCTCGCTTCG
TAGTGCCCTTCGCAGGCGTCCACCACACGCAGCAGCGGGGAACAAACTCC
CCTTCGGCACTCATGGAGCCCAACGAAATGTCCTTGGCCCGCCGCTGCGC
ACCACCTCCCCCGCTTCCTCCCCCAACACCACTACCAGAGCTAACACCTA
GTCCTCCACCGCCAGAAGATATCTGCAGAGATCCAGCTCCATCTCGCTGG
TATTTGGGGTCTAATGAGAAATCGAACAAAGAGGGGCCGAGCGGATTGAA
GCGCTGCTGCTGCTGTTTGTCGGCGCTGCTGTTTGCTTTCCTTTGCTCCA
GGGCATTTTCATTTCTGTCGGACTGCCCCAACTGCTGGTTTTCTTTTCCC
ACCTTTGATGTCGAAGCATTGCTAGTAGTGACCTCGTCTCGTTCGTGGTC
GTACACCCGACGTGCCGCCGTGACCATCTGCCGGACATGCAACACATACG
CATTCCCTTCCCGCGTCACACAGAGCAAGCGTCGCAAATCTTCGCTTAAT
GCCAAGCAGGCAATCGTATTCGATGGTCCCCTCCCTGAAAAAAGTCTTCC
GCCACTCCCGCTGTGGCTCCTCCCACCCCCTCCGTTGGTGCCGCTGCTTC
TGCCGCCGCTGGTGGGGAGGATGGGCCATTCGTACATATAG

Synonyms

Publications