jgi.p|Nanoce1779_2|587540, mRNA_4692 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587540
Unique NamemRNA_4692
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1533
Alignment locationscaffold_9:404538..406070 -

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Properties
Property NameValue
TranscriptId587626
TrackFilteredModels2
ProteinId587540
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:404538..406070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587540gene_4692Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587540mRNA_4692-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4692CDS_4692Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4692 ID=mRNA_4692|Name=jgi.p|Nanoce1779_2|587540|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ACGACAGGATGCCCATGCCAAGCAGCGGCGGACGAACGCGCAAGAAGTCC
AAGTCTAGCCTCCACAATGGATGGTGGGGTATGAGCGGACGGTGCATGGT
CTTCTGTGCGATCGTCGGCTTCAGTTGGGGCCTCTTCATCATTACGCGCG
TTGCCGGGCCAAGCCTAGCGCCTGCCTTGCTGAACAGCAGCGGGGGCAGC
AATGGAGCTAACACTTTGGCGGCGATGGGTTCTGTCGCGGCCGCGGGGGA
TCAGTCGTTGCGAGAATGGAACGAGGCGCCAGAAGACGATCGGTTCTACC
TCGTCTTCTCCACGGACTGCACGGGCTATCAAAATTGGCAGTCCCTGGCC
TTGATCTTCTCCGCGGACGACGTCCACCAGCCTGGGAACCTCGTGCGCAT
CGCCAGCGGGTGTACCGAAGCCGAGAAAAAGGAGGTGCAAGAACTATACG
ACCAGTTCCCCGCGCGTTTCCAAGTGCATTTCACCCCCGATTTCAAAAAG
GACGCCAAGACAGGCAAGTCCTACGACTTCTACAATAAACCACATGGGCT
CCGCCACTGGCTGGACAGTGCGGCCGCGCCCAAGCAGAAGGACGCCATCA
TCGCCCTGCTTGACCCAGATTTCCTTTTCCTTCGGCCCTTGACCTACAAG
GTGAAAAAGGACACGGTCCTCTTCTCCCCCACAATCACGAAAGCCGACTT
GATCGACGAAGTGACCGAGGGACACCCAGTTGCGCAGCACTACGGTATCG
GCTCACACTGGACCAAATTCAAGGTACCGTACATCGCGGGGGCTGACTCT
CCGGCTACCAAGGTGAGCATATCGGATGCGTATCGTGGGTATTCTGTTGG
AGCCCCCTATATTGTTCATGTGAATGACATGCGCAAAATCGCCAAGAAAT
GGTCTGAATTTGTCCCCAAGGTATTCGAGGAATACCCTAACTTGCTAGCG
GAGATGTATGCTTATTCAATTGCGGCTGCTCATCTGCAGTTGCCACATTT
GAGGCTTGATCACTACATGATCAGTAATATCGACGCGTCGGGGGAAGGTT
GGCCTTTCGTTGATAAGCTTGCTGAGACATATGTGTGTAGTGAAGATGCT
CCTGATATGGGGGATGAGCAGCCGGTGTTCCTGCATTACTGCCAGTTCTA
CCGTGTGGAGCATTGGGGATTCCATAAGCGACGGGTGGATGAACATTTAT
TCAGCTGTGAGAGTCCTTTGTTTTTGATGCCGCCCGAAGATTTGGAGGAC
ACGCATTGGAAGGAGGATCGGGAGAAGAAGACCGTGCTTAGCAAAAAGCA
GGCGCAGCATGCGGCTTTTTCCCTTTGTAATATCATCAAGAAGTTGAATC
GTGTGGGAACGAAGTTTAAGAATATGTTCTGTCCGAATGGAGGAGCAAAT
TATACGCAAACGGTCAAAATCTGGTAAAAAAAAAAGACAGGAAGGGGTTT
GTTGAAGAGAGAAGCAGCTATTGCTTTGGCATAAACGTAAGAAAACCAAA
AACAGAATGGAAGCTATATGTGGAGGCCGTTTA
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protein sequence of jgi.p|Nanoce1779_2|587540

>mRNA_4692-protein ID=mRNA_4692-protein|Name=jgi.p|Nanoce1779_2|587540|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MPMPSSGGRTRKKSKSSLHNGWWGMSGRCMVFCAIVGFSWGLFIITRVAG
PSLAPALLNSSGGSNGANTLAAMGSVAAAGDQSLREWNEAPEDDRFYLVF
STDCTGYQNWQSLALIFSADDVHQPGNLVRIASGCTEAEKKEVQELYDQF
PARFQVHFTPDFKKDAKTGKSYDFYNKPHGLRHWLDSAAAPKQKDAIIAL
LDPDFLFLRPLTYKVKKDTVLFSPTITKADLIDEVTEGHPVAQHYGIGSH
WTKFKVPYIAGADSPATKVSISDAYRGYSVGAPYIVHVNDMRKIAKKWSE
FVPKVFEEYPNLLAEMYAYSIAAAHLQLPHLRLDHYMISNIDASGEGWPF
VDKLAETYVCSEDAPDMGDEQPVFLHYCQFYRVEHWGFHKRRVDEHLFSC
ESPLFLMPPEDLEDTHWKEDREKKTVLSKKQAQHAAFSLCNIIKKLNRVG
TKFKNMFCPNGGANYTQTVKIW*
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mRNA from alignment at scaffold_9:404538..406070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4692 ID=mRNA_4692|Name=jgi.p|Nanoce1779_2|587540|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at scaffold_9:404538..406070- (Nannochloropsis oceanica)
ACGACAGGATGCCCATGCCAAGCAGCGGCGGACGAACGCGCAAGAAGTCC
AAGTCTAGCCTCCACAATGGATGGTGGGGTATGAGCGGACGGTGCATGGT
CTTCTGTGCGATCGTCGGCTTCAGTTGGGGCCTCTTCATCATTACGCGCG
TTGCCGGGCCAAGCCTAGCGCCTGCCTTGCTGAACAGCAGCGGGGGCAGC
AATGGAGCTAACACTTTGGCGGCGATGGGTTCTGTCGCGGCCGCGGGGGA
TCAGTCGTTGCGAGAATGGAACGAGGCGCCAGAAGACGATCGGTTCTACC
TCGTCTTCTCCACGGACTGCACGGGCTATCAAAATTGGCAGTCCCTGGCC
TTGATCTTCTCCGCGGACGACGTCCACCAGCCTGGGAACCTCGTGCGCAT
CGCCAGCGGGTGTACCGAAGCCGAGAAAAAGGAGGTGCAAGAACTATACG
ACCAGTTCCCCGCGCGTTTCCAAGTGCATTTCACCCCCGATTTCAAAAAG
GACGCCAAGACAGGCAAGTCCTACGACTTCTACAATAAACCACATGGGCT
CCGCCACTGGCTGGACAGTGCGGCCGCGCCCAAGCAGAAGGACGCCATCA
TCGCCCTGCTTGACCCAGATTTCCTTTTCCTTCGGCCCTTGACCTACAAG
GTGAAAAAGGACACGGTCCTCTTCTCCCCCACAATCACGAAAGCCGACTT
GATCGACGAAGTGACCGAGGGACACCCAGTTGCGCAGCACTACGGTATCG
GCTCACACTGGACCAAATTCAAGGTACCGTACATCGCGGGGGCTGACTCT
CCGGCTACCAAGGTGAGCATATCGGATGCGTATCGTGGGTATTCTGTTGG
AGCCCCCTATATTGTTCATGTGAATGACATGCGCAAAATCGCCAAGAAAT
GGTCTGAATTTGTCCCCAAGGTATTCGAGGAATACCCTAACTTGCTAGCG
GAGATGTATGCTTATTCAATTGCGGCTGCTCATCTGCAGTTGCCACATTT
GAGGCTTGATCACTACATGATCAGTAATATCGACGCGTCGGGGGAAGGTT
GGCCTTTCGTTGATAAGCTTGCTGAGACATATGTGTGTAGTGAAGATGCT
CCTGATATGGGGGATGAGCAGCCGGTGTTCCTGCATTACTGCCAGTTCTA
CCGTGTGGAGCATTGGGGATTCCATAAGCGACGGGTGGATGAACATTTAT
TCAGCTGTGAGAGTCCTTTGTTTTTGATGCCGCCCGAAGATTTGGAGGAC
ACGCATTGGAAGGAGGATCGGGAGAAGAAGACCGTGCTTAGCAAAAAGCA
GGCGCAGCATGCGGCTTTTTCCCTTTGTAATATCATCAAGAAGTTGAATC
GTGTGGGAACGAAGTTTAAGAATATGTTCTGTCCGAATGGAGGAGCAAAT
TATACGCAAACGGTCAAAATCTGGTAAAAAAAAAAGACAGGAAGGGGTTT
GTTGAAGAGAGAAGCAGCTATTGCTTTGGCATAAACGTAAGAAAACCAAA
AACAGAATGGAAGCTATATGTGGAGGCCGTTTA
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Coding sequence (CDS) from alignment at scaffold_9:404538..406070-

>mRNA_4692 ID=mRNA_4692|Name=jgi.p|Nanoce1779_2|587540|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at scaffold_9:404538..406070- (Nannochloropsis oceanica)
ATGCCCATGCCAAGCAGCGGCGGACGAACGCGCAAGAAGTCCAAGTCTAG
CCTCCACAATGGATGGTGGGGTATGAGCGGACGGTGCATGGTCTTCTGTG
CGATCGTCGGCTTCAGTTGGGGCCTCTTCATCATTACGCGCGTTGCCGGG
CCAAGCCTAGCGCCTGCCTTGCTGAACAGCAGCGGGGGCAGCAATGGAGC
TAACACTTTGGCGGCGATGGGTTCTGTCGCGGCCGCGGGGGATCAGTCGT
TGCGAGAATGGAACGAGGCGCCAGAAGACGATCGGTTCTACCTCGTCTTC
TCCACGGACTGCACGGGCTATCAAAATTGGCAGTCCCTGGCCTTGATCTT
CTCCGCGGACGACGTCCACCAGCCTGGGAACCTCGTGCGCATCGCCAGCG
GGTGTACCGAAGCCGAGAAAAAGGAGGTGCAAGAACTATACGACCAGTTC
CCCGCGCGTTTCCAAGTGCATTTCACCCCCGATTTCAAAAAGGACGCCAA
GACAGGCAAGTCCTACGACTTCTACAATAAACCACATGGGCTCCGCCACT
GGCTGGACAGTGCGGCCGCGCCCAAGCAGAAGGACGCCATCATCGCCCTG
CTTGACCCAGATTTCCTTTTCCTTCGGCCCTTGACCTACAAGGTGAAAAA
GGACACGGTCCTCTTCTCCCCCACAATCACGAAAGCCGACTTGATCGACG
AAGTGACCGAGGGACACCCAGTTGCGCAGCACTACGGTATCGGCTCACAC
TGGACCAAATTCAAGGTACCGTACATCGCGGGGGCTGACTCTCCGGCTAC
CAAGGTGAGCATATCGGATGCGTATCGTGGGTATTCTGTTGGAGCCCCCT
ATATTGTTCATGTGAATGACATGCGCAAAATCGCCAAGAAATGGTCTGAA
TTTGTCCCCAAGGTATTCGAGGAATACCCTAACTTGCTAGCGGAGATGTA
TGCTTATTCAATTGCGGCTGCTCATCTGCAGTTGCCACATTTGAGGCTTG
ATCACTACATGATCAGTAATATCGACGCGTCGGGGGAAGGTTGGCCTTTC
GTTGATAAGCTTGCTGAGACATATGTGTGTAGTGAAGATGCTCCTGATAT
GGGGGATGAGCAGCCGGTGTTCCTGCATTACTGCCAGTTCTACCGTGTGG
AGCATTGGGGATTCCATAAGCGACGGGTGGATGAACATTTATTCAGCTGT
GAGAGTCCTTTGTTTTTGATGCCGCCCGAAGATTTGGAGGACACGCATTG
GAAGGAGGATCGGGAGAAGAAGACCGTGCTTAGCAAAAAGCAGGCGCAGC
ATGCGGCTTTTTCCCTTTGTAATATCATCAAGAAGTTGAATCGTGTGGGA
ACGAAGTTTAAGAATATGTTCTGTCCGAATGGAGGAGCAAATTATACGCA
AACGGTCAAAATCTGGTAA
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Synonyms
Publications