jgi.p|Nanoce1779_2|587539, mRNA_4691 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587539
Unique NamemRNA_4691
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length395
Alignment locationscaffold_9:404155..404549 -

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Properties
Property NameValue
TranscriptId587625
TrackFilteredModels2
ProteinId587539
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:404155..404549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587539gene_4691Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587539mRNA_4691-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4691CDS_4691Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4691 ID=mRNA_4691|Name=jgi.p|Nanoce1779_2|587539|organism=Nannochloropsis oceanica|type=mRNA|length=395bp
GGAGGCCGTTTAGTTACTTTTTGATCGTTACCTTTATTATGTCGTTTGTT
GCTTTGTACTGTTGTGGTAGCTTGTCTTGTCTGCCTATTACTTATTCTTA
CCCTGCTGTCTTCTTTCTCAGTATCGATTCAACGGTTCGGATTCAATGTC
TCGTAGCGGCCCACCCTTCCTCCTCCTATCCCACCCCTTCGCCCATACAT
TCCATTGTTACCGTCACTTACAAAATCCTCAAAATCCAGTGGAGTCGGCG
GAGGAGGCGATGATGACAGGTCCATCGCCGTCGGCTCTAGTTCTCCTCCT
CCTACCCTTCGGCCTCTTCGTGACCTCAACCCATACCTGCGCCCGCCATC
TTGTCCTCCCTTGCCCGCTTCCTCCCCCCACTGTCCCCCTCCTCT
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protein sequence of jgi.p|Nanoce1779_2|587539

>mRNA_4691-protein ID=mRNA_4691-protein|Name=jgi.p|Nanoce1779_2|587539|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MSFVALYCCGSLSCLPITYSYPAVFFLSIDSTVRIQCLVAAHPSSSYPTP
SPIHSIVTVTYKILKIQWSRRRRR*
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mRNA from alignment at scaffold_9:404155..404549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4691 ID=mRNA_4691|Name=jgi.p|Nanoce1779_2|587539|organism=Nannochloropsis oceanica|type=mRNA|length=395bp|location=Sequence derived from alignment at scaffold_9:404155..404549- (Nannochloropsis oceanica)
GGAGGCCGTTTAGTTACTTTTTGATCGTTACCTTTATTATGTCGTTTGTT
GCTTTGTACTGTTGTGGTAGCTTGTCTTGTCTGCCTATTACTTATTCTTA
CCCTGCTGTCTTCTTTCTCAGTATCGATTCAACGGTTCGGATTCAATGTC
TCGTAGCGGCCCACCCTTCCTCCTCCTATCCCACCCCTTCGCCCATACAT
TCCATTGTTACCGTCACTTACAAAATCCTCAAAATCCAGTGGAGTCGGCG
GAGGAGGCGATGATGACAGGTCCATCGCCGTCGGCTCTAGTTCTCCTCCT
CCTACCCTTCGGCCTCTTCGTGACCTCAACCCATACCTGCGCCCGCCATC
TTGTCCTCCCTTGCCCGCTTCCTCCCCCCACTGTCCCCCTCCTCT
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Coding sequence (CDS) from alignment at scaffold_9:404155..404549-

>mRNA_4691 ID=mRNA_4691|Name=jgi.p|Nanoce1779_2|587539|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_9:404155..404549- (Nannochloropsis oceanica)
ATGTCGTTTGTTGCTTTGTACTGTTGTGGTAGCTTGTCTTGTCTGCCTAT
TACTTATTCTTACCCTGCTGTCTTCTTTCTCAGTATCGATTCAACGGTTC
GGATTCAATGTCTCGTAGCGGCCCACCCTTCCTCCTCCTATCCCACCCCT
TCGCCCATACATTCCATTGTTACCGTCACTTACAAAATCCTCAAAATCCA
GTGGAGTCGGCGGAGGAGGCGATGA
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Synonyms
Publications