jgi.p|Nanoce1779_2|587537, mRNA_4690 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587537
Unique Name	mRNA_4690
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1935
Alignment location	scaffold_9:400433..402367 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	587623
Track	FilteredModels2
ProteinId	587537

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:400433..402367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587537	gene_4690	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587537	mRNA_4690-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4690	CDS_4690	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:400433..402367+
coding sequence from alignment at scaffold_9:400433..402367+

mRNA sequence

>mRNA_4690 ID=mRNA_4690|Name=jgi.p|Nanoce1779_2|587537|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp
AGAAGCAGGAACAGCAGTAGCAACAGCAGCAGATGCGAACCTAAATAAAG
CCCCAGCAAAAGGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAGGAGTA
TCAACTTTGTGGTCATCGGTGCAGCGGGGGGAGAGGATTCTGAAACTGTG
GCAGCGAGGAAAGGACGAAGCGGCGGAAGTGGAGCTTGCACATCACTACG
GCCATGCTATGAACCCCCCTCCTCCTTCAATGCCTGCAATACCTGCACCG
GGAGCAGCAGGAGGAGGGGGAAGCGGAGGAGGGAGAATTGCTTGCAGCAG
CAGCAGCAGCAGCAGCAACACTCATTCTCGTAAATTGTCTTTCGTGGTGG
TGGAGGAACTGGCGGAGGGATGGATGGATGAAGGGGTAAAGGAGAACAAT
GTGTCGTTCCCTCCGGAGGTGGATGAGGCAAAAGCGAGTGTTGGAGAGAC
AGAGACGGGTCCACGAGGAGGGATGGTAGAGAAGGTGGGGGAGGGAGAGG
AAGAAGGGAAGGAGGGCTGGGAGGTATGTGAGAGTGAGTCGATAGGCCGG
AGCCCTGAGGGTGAAGGGGGGGAGAGCCAGGAGGATAGGGCGAGTACCAA
CAGTATCAGCAGCAGCGCTAGCAGCGCCATGGTCGTGTCTAATGACCGCG
AGCTGACGGCTGCGACAGCAACGGTCAGCGTGGAAGGAAGAATGTTGGTT
CACCGTCATCATCACCATCATCATCAGCAGCAAGCATTGATCATGGGGGC
GTTCACTCAAAGTGTGCAGCAGGAGCTTCGTAGACAGACAACGGCGGCAC
GTGTGATTCGACTGGAGGGCATGCTTGAAAAACGACGCCAGTACCGAGCG
CGACAAAAGCGGGAAGAAGGGAGGGCAGCCAAGCAGGAACAATGTGGACG
AAAAGAGACTCTGAGACAACGAGGACGAGAGCTGGTCGAGGTGAGACGGC
GACATCAGATAGAGTGTGGTAAAGCGGATGAGAGTCGTCGACTGAAGGAC
CAGGCGCTGTTCACGTATTTGCTTCCAGTCAGCATGGCGGTTTTTGGTGT
GGTTGTGTACTTGGCTTCCCTGTCAGAAGAAAGTCGAGGAGGAGAAGGCG
CGGGTATGCTATTAATTGAGGCTCTGTGGCATGTCCCTTTCCACGACCTG
CTCTACGGAGACTGCAAGGCCCGCCCACAATCCCTTCCTTCCACCTCCTT
GACCGCACCAAAAATCAAAGTGGTCCATCACAATGTGAAGGGCATCCCTG
GCGCTGCCCACTCTCTGTCGTCCTCTTCTTCCCATTTCGCGTCTTCAGGA
TTACAGTTATTGAATGTGTTGGTGGGGTATGTGGTGCCTGAAGGGATGGA
TTTAGGTCTGACTGGTGCTTTTGGAATGACGGGATGCTACGTGAAGCGGA
CGTTGACCCTGGTGGCCAATATGGGCTTGATGGTCTTGTTACATTACCTA
ATGGGTGAGTTAGGTCTAGGACAGCATAGAGCAAAGCTACATGTGGGAAT
GTTGCTGTATTGCTGTCGAGAGGCCTTCGTACGGCTGACCTGGAGGAGTC
TCTTCTCTGTGAGGTGTGTGTTAGGGTTTCATGGCCTGCTCTGGGTGATG
ACCGCGTGGAAGGATGAGGGCCACGCATTTCAATATCGTCACATTCTCTT
TCACCGTGTTGTGCCATTGATCGCGTTGGGGGTTGGGGTGTGGGATGCAA
CAAGGCAGGTGGATCCGAGGGAGGCCTTGGAAAGCTTTCGTTTGCTGGCG
AAGCAGATTGTAAATTAGCCTGTGAATCTCTTGCTAGCTATGTGATTCAT
GAGACGAGTGAATGTGCATATCAAAATCCATAAACAAATTTTGCCTTTCT
GCTGCGACAAGAAAACAAGGCCAGGCATCGGAACAAAGAAATAAATACAG
GTTTCAGAAAACAAAAGAAAACGCTCCGATGAGAC

protein sequence of jgi.p|Nanoce1779_2|587537

>mRNA_4690-protein ID=mRNA_4690-protein|Name=jgi.p|Nanoce1779_2|587537|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MNPPPPSMPAIPAPGAAGGGGSGGGRIACSSSSSSSNTHSRKLSFVVVEE
LAEGWMDEGVKENNVSFPPEVDEAKASVGETETGPRGGMVEKVGEGEEEG
KEGWEVCESESIGRSPEGEGGESQEDRASTNSISSSASSAMVVSNDRELT
AATATVSVEGRMLVHRHHHHHHQQQALIMGAFTQSVQQELRRQTTAARVI
RLEGMLEKRRQYRARQKREEGRAAKQEQCGRKETLRQRGRELVEVRRRHQ
IECGKADESRRLKDQALFTYLLPVSMAVFGVVVYLASLSEESRGGEGAGM
LLIEALWHVPFHDLLYGDCKARPQSLPSTSLTAPKIKVVHHNVKGIPGAA
HSLSSSSSHFASSGLQLLNVLVGYVVPEGMDLGLTGAFGMTGCYVKRTLT
LVANMGLMVLLHYLMGELGLGQHRAKLHVGMLLYCCREAFVRLTWRSLFS
VRCVLGFHGLLWVMTAWKDEGHAFQYRHILFHRVVPLIALGVGVWDATRQ
VDPREALESFRLLAKQIVN*

mRNA from alignment at scaffold_9:400433..402367+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4690 ID=mRNA_4690|Name=jgi.p|Nanoce1779_2|587537|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at scaffold_9:400433..402367+ (Nannochloropsis oceanica)
AGAAGCAGGAACAGCAGTAGCAACAGCAGCAGATGCGAACCTAAATAAAG
CCCCAGCAAAAGGAGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAGGAGTA
TCAACTTTGTGGTCATCGGTGCAGCGGGGGGAGAGGATTCTGAAACTGTG
GCAGCGAGGAAAGGACGAAGCGGCGGAAGTGGAGCTTGCACATCACTACG
GCCATGCTATGAACCCCCCTCCTCCTTCAATGCCTGCAATACCTGCACCG
GGAGCAGCAGGAGGAGGGGGAAGCGGAGGAGGGAGAATTGCTTGCAGCAG
CAGCAGCAGCAGCAGCAACACTCATTCTCGTAAATTGTCTTTCGTGGTGG
TGGAGGAACTGGCGGAGGGATGGATGGATGAAGGGGTAAAGGAGAACAAT
GTGTCGTTCCCTCCGGAGGTGGATGAGGCAAAAGCGAGTGTTGGAGAGAC
AGAGACGGGTCCACGAGGAGGGATGGTAGAGAAGGTGGGGGAGGGAGAGG
AAGAAGGGAAGGAGGGCTGGGAGGTATGTGAGAGTGAGTCGATAGGCCGG
AGCCCTGAGGGTGAAGGGGGGGAGAGCCAGGAGGATAGGGCGAGTACCAA
CAGTATCAGCAGCAGCGCTAGCAGCGCCATGGTCGTGTCTAATGACCGCG
AGCTGACGGCTGCGACAGCAACGGTCAGCGTGGAAGGAAGAATGTTGGTT
CACCGTCATCATCACCATCATCATCAGCAGCAAGCATTGATCATGGGGGC
GTTCACTCAAAGTGTGCAGCAGGAGCTTCGTAGACAGACAACGGCGGCAC
GTGTGATTCGACTGGAGGGCATGCTTGAAAAACGACGCCAGTACCGAGCG
CGACAAAAGCGGGAAGAAGGGAGGGCAGCCAAGCAGGAACAATGTGGACG
AAAAGAGACTCTGAGACAACGAGGACGAGAGCTGGTCGAGGTGAGACGGC
GACATCAGATAGAGTGTGGTAAAGCGGATGAGAGTCGTCGACTGAAGGAC
CAGGCGCTGTTCACGTATTTGCTTCCAGTCAGCATGGCGGTTTTTGGTGT
GGTTGTGTACTTGGCTTCCCTGTCAGAAGAAAGTCGAGGAGGAGAAGGCG
CGGGTATGCTATTAATTGAGGCTCTGTGGCATGTCCCTTTCCACGACCTG
CTCTACGGAGACTGCAAGGCCCGCCCACAATCCCTTCCTTCCACCTCCTT
GACCGCACCAAAAATCAAAGTGGTCCATCACAATGTGAAGGGCATCCCTG
GCGCTGCCCACTCTCTGTCGTCCTCTTCTTCCCATTTCGCGTCTTCAGGA
TTACAGTTATTGAATGTGTTGGTGGGGTATGTGGTGCCTGAAGGGATGGA
TTTAGGTCTGACTGGTGCTTTTGGAATGACGGGATGCTACGTGAAGCGGA
CGTTGACCCTGGTGGCCAATATGGGCTTGATGGTCTTGTTACATTACCTA
ATGGGTGAGTTAGGTCTAGGACAGCATAGAGCAAAGCTACATGTGGGAAT
GTTGCTGTATTGCTGTCGAGAGGCCTTCGTACGGCTGACCTGGAGGAGTC
TCTTCTCTGTGAGGTGTGTGTTAGGGTTTCATGGCCTGCTCTGGGTGATG
ACCGCGTGGAAGGATGAGGGCCACGCATTTCAATATCGTCACATTCTCTT
TCACCGTGTTGTGCCATTGATCGCGTTGGGGGTTGGGGTGTGGGATGCAA
CAAGGCAGGTGGATCCGAGGGAGGCCTTGGAAAGCTTTCGTTTGCTGGCG
AAGCAGATTGTAAATTAGCCTGTGAATCTCTTGCTAGCTATGTGATTCAT
GAGACGAGTGAATGTGCATATCAAAATCCATAAACAAATTTTGCCTTTCT
GCTGCGACAAGAAAACAAGGCCAGGCATCGGAACAAAGAAATAAATACAG
GTTTCAGAAAACAAAAGAAAACGCTCCGATGAGAC

Coding sequence (CDS) from alignment at scaffold_9:400433..402367+

>mRNA_4690 ID=mRNA_4690|Name=jgi.p|Nanoce1779_2|587537|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_9:400433..402367+ (Nannochloropsis oceanica)
ATGAACCCCCCTCCTCCTTCAATGCCTGCAATACCTGCACCGGGAGCAGC
AGGAGGAGGGGGAAGCGGAGGAGGGAGAATTGCTTGCAGCAGCAGCAGCA
GCAGCAGCAACACTCATTCTCGTAAATTGTCTTTCGTGGTGGTGGAGGAA
CTGGCGGAGGGATGGATGGATGAAGGGGTAAAGGAGAACAATGTGTCGTT
CCCTCCGGAGGTGGATGAGGCAAAAGCGAGTGTTGGAGAGACAGAGACGG
GTCCACGAGGAGGGATGGTAGAGAAGGTGGGGGAGGGAGAGGAAGAAGGG
AAGGAGGGCTGGGAGGTATGTGAGAGTGAGTCGATAGGCCGGAGCCCTGA
GGGTGAAGGGGGGGAGAGCCAGGAGGATAGGGCGAGTACCAACAGTATCA
GCAGCAGCGCTAGCAGCGCCATGGTCGTGTCTAATGACCGCGAGCTGACG
GCTGCGACAGCAACGGTCAGCGTGGAAGGAAGAATGTTGGTTCACCGTCA
TCATCACCATCATCATCAGCAGCAAGCATTGATCATGGGGGCGTTCACTC
AAAGTGTGCAGCAGGAGCTTCGTAGACAGACAACGGCGGCACGTGTGATT
CGACTGGAGGGCATGCTTGAAAAACGACGCCAGTACCGAGCGCGACAAAA
GCGGGAAGAAGGGAGGGCAGCCAAGCAGGAACAATGTGGACGAAAAGAGA
CTCTGAGACAACGAGGACGAGAGCTGGTCGAGGTGAGACGGCGACATCAG
ATAGAGTGTGGTAAAGCGGATGAGAGTCGTCGACTGAAGGACCAGGCGCT
GTTCACGTATTTGCTTCCAGTCAGCATGGCGGTTTTTGGTGTGGTTGTGT
ACTTGGCTTCCCTGTCAGAAGAAAGTCGAGGAGGAGAAGGCGCGGGTATG
CTATTAATTGAGGCTCTGTGGCATGTCCCTTTCCACGACCTGCTCTACGG
AGACTGCAAGGCCCGCCCACAATCCCTTCCTTCCACCTCCTTGACCGCAC
CAAAAATCAAAGTGGTCCATCACAATGTGAAGGGCATCCCTGGCGCTGCC
CACTCTCTGTCGTCCTCTTCTTCCCATTTCGCGTCTTCAGGATTACAGTT
ATTGAATGTGTTGGTGGGGTATGTGGTGCCTGAAGGGATGGATTTAGGTC
TGACTGGTGCTTTTGGAATGACGGGATGCTACGTGAAGCGGACGTTGACC
CTGGTGGCCAATATGGGCTTGATGGTCTTGTTACATTACCTAATGGGTGA
GTTAGGTCTAGGACAGCATAGAGCAAAGCTACATGTGGGAATGTTGCTGT
ATTGCTGTCGAGAGGCCTTCGTACGGCTGACCTGGAGGAGTCTCTTCTCT
GTGAGGTGTGTGTTAGGGTTTCATGGCCTGCTCTGGGTGATGACCGCGTG
GAAGGATGAGGGCCACGCATTTCAATATCGTCACATTCTCTTTCACCGTG
TTGTGCCATTGATCGCGTTGGGGGTTGGGGTGTGGGATGCAACAAGGCAG
GTGGATCCGAGGGAGGCCTTGGAAAGCTTTCGTTTGCTGGCGAAGCAGAT
TGTAAATTAG

Synonyms

Publications