jgi.p|Nanoce1779_2|577399, mRNA_469 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577399
Unique Name	mRNA_469
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2178
Alignment location	scaffold_3:1140049..1142226 +

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Properties


Property Name	Value
TranscriptId	577485
Track	FilteredModels2
ProteinId	577399

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1140049..1142226 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577399	gene_469	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577399	mRNA_469-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_469	CDS_469	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1140049..1142226+
coding sequence from alignment at scaffold_3:1140049..1142226+

mRNA sequence

>mRNA_469 ID=mRNA_469|Name=jgi.p|Nanoce1779_2|577399|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp
ACAGAGCACAAGGATGAGGCGACAAGACGCCTTGATGGCCGCGCTGGCGG
GACTGACGCTCTGCTTGGGTGCCGTGCGTGGGTTTGTCATGCCTCGTCTG
CCCCGGCAGCAGTGTCAGACCTTCGGCCGCAGCACTGGCAGCAGCACCAG
CTTTATCAGTCACCACCCCAGCCCCACCTTCGGTCAAACTCCACGCAATG
TGCTTTCTTCCCGCCTGTGGATCAAGACCCCATCCGTGGCGGAGGATAAC
AGCGTGGCTGACAAGAAGAAGCAGTCCACAGAGCCTTCGTCCTCCTTCGC
CCCCATCACCTCCCTCGAAACATCCCTCAATTCTTCCGACGACTCCAGCG
CCTCCCCACAAGATCTCGCCCGTAGATTCGCTGCTGCCAACGGTATCGAT
TCCCGTCAGTTTAATTTCCTCGTGAACGTCGGGATGATCTCTCTGGTGGC
CGCCGTGGTGCTTGCCAAAGTAGTGACGGTCGATTTGGACTCGTGGCGTG
GCTGGACACCTGTTGAGATTTTCACTCGGATTCCCTTGGATAATTGGGAC
GGATACATGGACGTGTTGACGTTGCATCCTATTATGGTGAAGGCTATCAC
GAGTGGGAGTGTATATACTTTGGGGGATACGGTGGCACAGCTGTATGAGG
GCAAGACGCTCGGAGAGATTGACCGAGGCCGGGTGGCGCGGTCGGCAGCT
GCAGGGTTTATCGGACATGGCCCATTGTCGCATTTATGGTATGGGGTGTC
GGAGGGTTTTTTCGATTGGTTGGGCTGGGAGGGGTGGTGGACGACTTTTC
CCAAGATCACGGTGGATCAACTAGTGTGGTCACCGATTTGGAATGGATGT
TATATTTTCTTGCTGGGAGCCATGAAAAGGGAGGCACTAGGCGAGATTGT
CGGGACGGTAAAGTCGACGAGTTTCAGCTTGATCACCTCAGGGTTGAAGC
TATGGCCGTTGGCACATGTGGTGACGTACGGATTTATCCCTGTAGAGAAT
CGCTTGCTGTGGGTGGACTTGGTTGAGATTCTGTGGGTCACCATCCTGTC
CAGGGAGGCCGCGAACGCTGATGCAGAGAAAGCGGTAGCAGCAGCGGAAG
CTGCAGGGATTTCGTTGGGTGGAGATGGGGGTCATGCACCTGGAGTTTTG
CTATCTAAAGATGAGCCGACCAAGGTAGGGGAGGAATCGGTGACTGCTGA
ATTGTCGGACAACGTATCCATGCCTGTCGTCGCGAATTTCTCGGAGGCTG
TGGCAGCGGCAGCGTCGAAACAAGCGCGTAGAGAACAAATGGTCACGGTA
CCGGTGCACGTGGAAGATGAATTGACTTCGTGAAGATGGTAATGGTGAAA
ACGGGTGGAACGGAGGCACGGAGGGACAGAGGGAATGTGCATAAAAATGA
ACACAATAGTTAAGGAAGACGGGTGGATCGGAAGAGGTGGAAGGCGAAGG
CATGCGGTTGTCTTTGTATAAAGCACAAAAGGAGAAAGAGTCGTTTCGAC
TTAGGAGACCCTCCTCAAAATGGATAGACATGTAATAAGTACATATTATC
AAACGTTCGAGGACAACGACTTCAATCCAGTGTTGTAACGAGGGTTGGAG
AAGGCGGAGAGCTGCAGATAAAGAATCTTAGAGAAGATAATGCGGATGTT
CCCGTTTTGTTTGCCTTTCCTTGTGTCTTGGCAGGGGGAAGGGGAGGAGA
TGATAGGCTTGGAAGTAATGTTTAATTCTGCCTCGCTTTCTCCATGTGCG
TTTTCGTGTTTGATGTGTCGGAGCGAGGCTAATGGGGTATTGGCGCGCAA
ATGTGCAATGCCCAGGAGCAGCCTTCGGTATCCCACGCGCTATCTTAAAT
TTAAAAAATCGATTAGTGGCAACGGGAGAGAGAGAGAGATCCTCAATTGA
AATATACGACGGACTTAAAAGGGGGAAAGCAAAAAGGGAACAAGATAATT
CCTTGTGCTGTTTCTGCGTGGTATAAGTGTAAGAAGAGAAATGGACTAGC
GGAACGGAAGCGTGCGTAGTCTCTCTTTGTACTTCAGTCAGATAAGAGCA
AGCAGTTGAATAACGATATCGAATATAAGAAAATTGAATGTGGTGAAGAC
GTGGTATGAGAAGAATAAGGAGAAGGGAAGGATTTGGTTTACTGACGGGA
AAATGAAATAAGCAGCTACCTGTTGAGA

protein sequence of jgi.p|Nanoce1779_2|577399

>mRNA_469-protein ID=mRNA_469-protein|Name=jgi.p|Nanoce1779_2|577399|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRRQDALMAALAGLTLCLGAVRGFVMPRLPRQQCQTFGRSTGSSTSFISH
HPSPTFGQTPRNVLSSRLWIKTPSVAEDNSVADKKKQSTEPSSSFAPITS
LETSLNSSDDSSASPQDLARRFAAANGIDSRQFNFLVNVGMISLVAAVVL
AKVVTVDLDSWRGWTPVEIFTRIPLDNWDGYMDVLTLHPIMVKAITSGSV
YTLGDTVAQLYEGKTLGEIDRGRVARSAAAGFIGHGPLSHLWYGVSEGFF
DWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVGTVK
STSFSLITSGLKLWPLAHVVTYGFIPVENRLLWVDLVEILWVTILSREAA
NADAEKAVAAAEAAGISLGGDGGHAPGVLLSKDEPTKVGEESVTAELSDN
VSMPVVANFSEAVAAAASKQARREQMVTVPVHVEDELTS*

mRNA from alignment at scaffold_3:1140049..1142226+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_469 ID=mRNA_469|Name=jgi.p|Nanoce1779_2|577399|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at scaffold_3:1140049..1142226+ (Nannochloropsis oceanica)
ACAGAGCACAAGGATGAGGCGACAAGACGCCTTGATGGCCGCGCTGGCGG
GACTGACGCTCTGCTTGGGTGCCGTGCGTGGGTTTGTCATGCCTCGTCTG
CCCCGGCAGCAGTGTCAGACCTTCGGCCGCAGCACTGGCAGCAGCACCAG
CTTTATCAGTCACCACCCCAGCCCCACCTTCGGTCAAACTCCACGCAATG
TGCTTTCTTCCCGCCTGTGGATCAAGACCCCATCCGTGGCGGAGGATAAC
AGCGTGGCTGACAAGAAGAAGCAGTCCACAGAGCCTTCGTCCTCCTTCGC
CCCCATCACCTCCCTCGAAACATCCCTCAATTCTTCCGACGACTCCAGCG
CCTCCCCACAAGATCTCGCCCGTAGATTCGCTGCTGCCAACGGTATCGAT
TCCCGTCAGTTTAATTTCCTCGTGAACGTCGGGATGATCTCTCTGGTGGC
CGCCGTGGTGCTTGCCAAAGTAGTGACGGTCGATTTGGACTCGTGGCGTG
GCTGGACACCTGTTGAGATTTTCACTCGGATTCCCTTGGATAATTGGGAC
GGATACATGGACGTGTTGACGTTGCATCCTATTATGGTGAAGGCTATCAC
GAGTGGGAGTGTATATACTTTGGGGGATACGGTGGCACAGCTGTATGAGG
GCAAGACGCTCGGAGAGATTGACCGAGGCCGGGTGGCGCGGTCGGCAGCT
GCAGGGTTTATCGGACATGGCCCATTGTCGCATTTATGGTATGGGGTGTC
GGAGGGTTTTTTCGATTGGTTGGGCTGGGAGGGGTGGTGGACGACTTTTC
CCAAGATCACGGTGGATCAACTAGTGTGGTCACCGATTTGGAATGGATGT
TATATTTTCTTGCTGGGAGCCATGAAAAGGGAGGCACTAGGCGAGATTGT
CGGGACGGTAAAGTCGACGAGTTTCAGCTTGATCACCTCAGGGTTGAAGC
TATGGCCGTTGGCACATGTGGTGACGTACGGATTTATCCCTGTAGAGAAT
CGCTTGCTGTGGGTGGACTTGGTTGAGATTCTGTGGGTCACCATCCTGTC
CAGGGAGGCCGCGAACGCTGATGCAGAGAAAGCGGTAGCAGCAGCGGAAG
CTGCAGGGATTTCGTTGGGTGGAGATGGGGGTCATGCACCTGGAGTTTTG
CTATCTAAAGATGAGCCGACCAAGGTAGGGGAGGAATCGGTGACTGCTGA
ATTGTCGGACAACGTATCCATGCCTGTCGTCGCGAATTTCTCGGAGGCTG
TGGCAGCGGCAGCGTCGAAACAAGCGCGTAGAGAACAAATGGTCACGGTA
CCGGTGCACGTGGAAGATGAATTGACTTCGTGAAGATGGTAATGGTGAAA
ACGGGTGGAACGGAGGCACGGAGGGACAGAGGGAATGTGCATAAAAATGA
ACACAATAGTTAAGGAAGACGGGTGGATCGGAAGAGGTGGAAGGCGAAGG
CATGCGGTTGTCTTTGTATAAAGCACAAAAGGAGAAAGAGTCGTTTCGAC
TTAGGAGACCCTCCTCAAAATGGATAGACATGTAATAAGTACATATTATC
AAACGTTCGAGGACAACGACTTCAATCCAGTGTTGTAACGAGGGTTGGAG
AAGGCGGAGAGCTGCAGATAAAGAATCTTAGAGAAGATAATGCGGATGTT
CCCGTTTTGTTTGCCTTTCCTTGTGTCTTGGCAGGGGGAAGGGGAGGAGA
TGATAGGCTTGGAAGTAATGTTTAATTCTGCCTCGCTTTCTCCATGTGCG
TTTTCGTGTTTGATGTGTCGGAGCGAGGCTAATGGGGTATTGGCGCGCAA
ATGTGCAATGCCCAGGAGCAGCCTTCGGTATCCCACGCGCTATCTTAAAT
TTAAAAAATCGATTAGTGGCAACGGGAGAGAGAGAGAGATCCTCAATTGA
AATATACGACGGACTTAAAAGGGGGAAAGCAAAAAGGGAACAAGATAATT
CCTTGTGCTGTTTCTGCGTGGTATAAGTGTAAGAAGAGAAATGGACTAGC
GGAACGGAAGCGTGCGTAGTCTCTCTTTGTACTTCAGTCAGATAAGAGCA
AGCAGTTGAATAACGATATCGAATATAAGAAAATTGAATGTGGTGAAGAC
GTGGTATGAGAAGAATAAGGAGAAGGGAAGGATTTGGTTTACTGACGGGA
AAATGAAATAAGCAGCTACCTGTTGAGA

Coding sequence (CDS) from alignment at scaffold_3:1140049..1142226+

>mRNA_469 ID=mRNA_469|Name=jgi.p|Nanoce1779_2|577399|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_3:1140049..1142226+ (Nannochloropsis oceanica)
ATGAGGCGACAAGACGCCTTGATGGCCGCGCTGGCGGGACTGACGCTCTG
CTTGGGTGCCGTGCGTGGGTTTGTCATGCCTCGTCTGCCCCGGCAGCAGT
GTCAGACCTTCGGCCGCAGCACTGGCAGCAGCACCAGCTTTATCAGTCAC
CACCCCAGCCCCACCTTCGGTCAAACTCCACGCAATGTGCTTTCTTCCCG
CCTGTGGATCAAGACCCCATCCGTGGCGGAGGATAACAGCGTGGCTGACA
AGAAGAAGCAGTCCACAGAGCCTTCGTCCTCCTTCGCCCCCATCACCTCC
CTCGAAACATCCCTCAATTCTTCCGACGACTCCAGCGCCTCCCCACAAGA
TCTCGCCCGTAGATTCGCTGCTGCCAACGGTATCGATTCCCGTCAGTTTA
ATTTCCTCGTGAACGTCGGGATGATCTCTCTGGTGGCCGCCGTGGTGCTT
GCCAAAGTAGTGACGGTCGATTTGGACTCGTGGCGTGGCTGGACACCTGT
TGAGATTTTCACTCGGATTCCCTTGGATAATTGGGACGGATACATGGACG
TGTTGACGTTGCATCCTATTATGGTGAAGGCTATCACGAGTGGGAGTGTA
TATACTTTGGGGGATACGGTGGCACAGCTGTATGAGGGCAAGACGCTCGG
AGAGATTGACCGAGGCCGGGTGGCGCGGTCGGCAGCTGCAGGGTTTATCG
GACATGGCCCATTGTCGCATTTATGGTATGGGGTGTCGGAGGGTTTTTTC
GATTGGTTGGGCTGGGAGGGGTGGTGGACGACTTTTCCCAAGATCACGGT
GGATCAACTAGTGTGGTCACCGATTTGGAATGGATGTTATATTTTCTTGC
TGGGAGCCATGAAAAGGGAGGCACTAGGCGAGATTGTCGGGACGGTAAAG
TCGACGAGTTTCAGCTTGATCACCTCAGGGTTGAAGCTATGGCCGTTGGC
ACATGTGGTGACGTACGGATTTATCCCTGTAGAGAATCGCTTGCTGTGGG
TGGACTTGGTTGAGATTCTGTGGGTCACCATCCTGTCCAGGGAGGCCGCG
AACGCTGATGCAGAGAAAGCGGTAGCAGCAGCGGAAGCTGCAGGGATTTC
GTTGGGTGGAGATGGGGGTCATGCACCTGGAGTTTTGCTATCTAAAGATG
AGCCGACCAAGGTAGGGGAGGAATCGGTGACTGCTGAATTGTCGGACAAC
GTATCCATGCCTGTCGTCGCGAATTTCTCGGAGGCTGTGGCAGCGGCAGC
GTCGAAACAAGCGCGTAGAGAACAAATGGTCACGGTACCGGTGCACGTGG
AAGATGAATTGACTTCGTGA

Synonyms

Publications