jgi.p|Nanoce1779_2|565487, mRNA_4688 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565487
Unique NamemRNA_4688
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length417
Alignment locationscaffold_9:395205..395621 +

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Properties
Property NameValue
TranscriptId565573
TrackFilteredModels2
ProteinId565487
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:395205..395621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565487gene_4688Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565487mRNA_4688-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4688CDS_4688Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4688 ID=mRNA_4688|Name=jgi.p|Nanoce1779_2|565487|organism=Nannochloropsis oceanica|type=mRNA|length=417bp
ATGTCTTGCAATGTCATCGTAACGGGGAATGCTGCCCCTACAGCTTCTGG
ACGTCGCTTTGAATTGAAATCAGATGCACACCAAGATGAGTATGATAATT
TTATGCTGGTCTCGTCAGGGGCAAAGATATGGGCGTTGGCCTCTCTGACG
GAGGAGCAGGTTTTGAAAGGAAGGAAGACGAAGGGAAAACTGAGCAGTTC
CTTTCGACTCGATGCCGTGGATAGGACGAAGAATCGAACGAGAGAGGAGC
ACGAGATTGCGGGGTGTTTTGAAACTGTGTGGATGGGCCCGGGGGATGTG
CTTTACAATCCAGCTTGGGTGTGGCATCAGGTGAATAGTGAGCCGCAGAC
GTTGGCGTACAGTATCATGCACACTACAAACGGGAAGGAGGAAAAGGCAG
GCGAGACGAGGGGTTGA
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protein sequence of jgi.p|Nanoce1779_2|565487

>mRNA_4688-protein ID=mRNA_4688-protein|Name=jgi.p|Nanoce1779_2|565487|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSCNVIVTGNAAPTASGRRFELKSDAHQDEYDNFMLVSSGAKIWALASLT
EEQVLKGRKTKGKLSSSFRLDAVDRTKNRTREEHEIAGCFETVWMGPGDV
LYNPAWVWHQVNSEPQTLAYSIMHTTNGKEEKAGETRG*
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mRNA from alignment at scaffold_9:395205..395621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4688 ID=mRNA_4688|Name=jgi.p|Nanoce1779_2|565487|organism=Nannochloropsis oceanica|type=mRNA|length=417bp|location=Sequence derived from alignment at scaffold_9:395205..395621+ (Nannochloropsis oceanica)
ATGTCTTGCAATGTCATCGTAACGGGGAATGCTGCCCCTACAGCTTCTGG
ACGTCGCTTTGAATTGAAATCAGATGCACACCAAGATGAGTATGATAATT
TTATGCTGGTCTCGTCAGGGGCAAAGATATGGGCGTTGGCCTCTCTGACG
GAGGAGCAGGTTTTGAAAGGAAGGAAGACGAAGGGAAAACTGAGCAGTTC
CTTTCGACTCGATGCCGTGGATAGGACGAAGAATCGAACGAGAGAGGAGC
ACGAGATTGCGGGGTGTTTTGAAACTGTGTGGATGGGCCCGGGGGATGTG
CTTTACAATCCAGCTTGGGTGTGGCATCAGGTGAATAGTGAGCCGCAGAC
GTTGGCGTACAGTATCATGCACACTACAAACGGGAAGGAGGAAAAGGCAG
GCGAGACGAGGGGTTGA
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Coding sequence (CDS) from alignment at scaffold_9:395205..395621+

>mRNA_4688 ID=mRNA_4688|Name=jgi.p|Nanoce1779_2|565487|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_9:395205..395621+ (Nannochloropsis oceanica)
ATGTCTTGCAATGTCATCGTAACGGGGAATGCTGCCCCTACAGCTTCTGG
ACGTCGCTTTGAATTGAAATCAGATGCACACCAAGATGAGTATGATAATT
TTATGCTGGTCTCGTCAGGGGCAAAGATATGGGCGTTGGCCTCTCTGACG
GAGGAGCAGGTTTTGAAAGGAAGGAAGACGAAGGGAAAACTGAGCAGTTC
CTTTCGACTCGATGCCGTGGATAGGACGAAGAATCGAACGAGAGAGGAGC
ACGAGATTGCGGGGTGTTTTGAAACTGTGTGGATGGGCCCGGGGGATGTG
CTTTACAATCCAGCTTGGGTGTGGCATCAGGTGAATAGTGAGCCGCAGAC
GTTGGCGTACAGTATCATGCACACTACAAACGGGAAGGAGGAAAAGGCAG
GCGAGACGAGGGGTTGA
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Synonyms
Publications