jgi.p|Nanoce1779_2|587492, mRNA_4681 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|587492
Unique Name	mRNA_4681
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1079
Alignment location	scaffold_9:375537..376970 +

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Properties


Property Name	Value
TranscriptId	587578
Track	FilteredModels2
ProteinId	587492

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:375537..376970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587492	gene_4681	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|587492	mRNA_4681-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4681	CDS_4681	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:375537..376970+
coding sequence from alignment at scaffold_9:375537..376970+

mRNA sequence

>mRNA_4681 ID=mRNA_4681|Name=jgi.p|Nanoce1779_2|587492|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
AGACGCATAGGGTACAGAAGTAGGTAGCAACAGTCCTCAACGACGCCGAT
ACCGAGAATCAGCCTCTTAAGGCTTGCAGTGGCAGTCAAATAGTACATCT
TGTCCATCACATGGCCGACCAGCTTTGTTGAGCAGTCAGCACGCTCCTCC
TCTCTCGTTTCCCGTCAAATAGATACTTCCACAGAAACGACATTCCAAAG
CATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGC
GGCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGT
AGAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCG
CAAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGT
GGGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCA
GCGTCCTCAACACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTT
TGAACGGTACCGAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTC
CCCGCGGTCGGCTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAG
GTAGTGAATTTTGAGGGAGTGCGGCGACGTAAGCAAAGGGTTCTAGGGCA
CAGCTTTGTGATAAAAATCTATACAAGGCGGAATGATAGGGTTGGAGACG
AAGATAAGGAATTTGTGGAGACCAGCATTCTCTTCACAAAGCATAACACC
GGCCGAAAACACGCACGGCAGCAAGCCGCGGAGATCAACAAATACGCCAG
GGGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAACGCCT
TGGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGCCCTA
CTGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACAAATA
AAAAGCATTTGTTTACTAGCTTTGAAAGGTTGGCTTGATGAAAGTCGTGT
ATTTTGCATTCAGGATGGGAGGAGACAAGCAACAAGACAACCAAAACACA
CCTGCAAGCGAGGATTAAAAAAACGATTT

protein sequence of jgi.p|Nanoce1779_2|587492

>mRNA_4681-protein ID=mRNA_4681-protein|Name=jgi.p|Nanoce1779_2|587492|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MVLDNVVRGIAHAFKVRRAPILPTSFDSPRRRRRIRHVADTASYYASRLR
KTKVPEVSFVQAATYVWVFVSLVVALIGYASCSASSTRTLLHCTPTACTF
ERYRGTGKVPLEDVSFPRGRLLGSQSVRTRNGEVVNFEGVRRRKQRVLGH
SFVIKIYTRRNDRVGDEDKEFVETSILFTKHNTGRKHARQQAAEINKYAR
GELDWLEIVEVKKWNALGILAVVAGLVSTVFALLLGDVFGHGNDDGKNK*

mRNA from alignment at scaffold_9:375537..376970+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4681 ID=mRNA_4681|Name=jgi.p|Nanoce1779_2|587492|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at scaffold_9:375537..376970+ (Nannochloropsis oceanica)
AGACGCATAGGGTACAGAAGTAGGTAGCAACAGTCCTCAACGACGCCGAT
ACCGAGAATCAGCCTCTTAAGGCTTGCAGTGGCAGTCAAATAGTACATCT
TGTCCATCACATGGCCGACCAGCTTTGTTGAGCAGTCAGCACGCTCCTCC
TCTCTCGTTTCCCGTCAAATAGATACTTCCACAGAAACGACATTCCAAAG
CATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGC
GGCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGT
AGAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCG
CAAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGT
GGGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCG
TACGTACGAGATTCGGGGAACGGGGTCGTCTCTCTATTTCTCTCTTCTCC
TCACTCTTATTTCCGTGTATTTACCCCTCACCCCACAGAGCGTCCTCAAC
ACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTTGAACGGTACC
GAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCCCCGCGGTCGG
CTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGGTAGTGAATTT
TGAGTGAGTGTACTATGACGCTTTAAAAATGGAAATTCATGGCTTTTAAA
AACATTATTCCTTTCTTTGGCTCCACTGCTCCCGCCCTGTTAAACTCCTC
TTATCCTTCCTTTTCATTATCATCACCATTACTTGTCTTTACAGGGGAGT
GCGGCGACGTAAGCAAAGGGTTCTAGGGCACAGCTTTGTGATAAAAATCT
ATACAAGGCGGAATGATAGGGTTGGAGACGAAGATAAGGAATTTGTGGAG
ACCAGCATTCTCTTCACAAAGCATAACACCGGCCGAAAACACGCACGGTA
TGTGACATGCTCGGGTCGGATGAAAGGGATGTGAGGTGGATAGAAGATTT
GTGCATGTAGTCTCTTCAGACTTAGTTGCTCGCTTATGAATCTCACATTA
CACCTCTTGTCATATAATACAGGCAGCAAGCCGCGGAGATCAACAAATAC
GCCAGGGGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAA
CGCCTTGGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTG
CCCTACTGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAAC
AAATAAAAAGCATTTGTTTACTAGCTTTGAAAGGTTGGCTTGATGAAAGT
CGTGTATTTTGCATTCAGGATGGGAGGAGACAAGCAACAAGACAACCAAA
ACACACCTGCAAGCGAGGATTAAAAAAACGATTT

Coding sequence (CDS) from alignment at scaffold_9:375537..376970+

>mRNA_4681 ID=mRNA_4681|Name=jgi.p|Nanoce1779_2|587492|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_9:375537..376970+ (Nannochloropsis oceanica)
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCAG
CGTCCTCAACACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTT
GAACGGTACCGAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCC
CCGCGGTCGGCTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGG
TAGTGAATTTTGAGGGAGTGCGGCGACGTAAGCAAAGGGTTCTAGGGCAC
AGCTTTGTGATAAAAATCTATACAAGGCGGAATGATAGGGTTGGAGACGA
AGATAAGGAATTTGTGGAGACCAGCATTCTCTTCACAAAGCATAACACCG
GCCGAAAACACGCACGGCAGCAAGCCGCGGAGATCAACAAATACGCCAGG
GGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAACGCCTT
GGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGCCCTAC
TGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACAAATAA
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCAG
CGTCCTCAACACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTT
GAACGGTACCGAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCC
CCGCGGTCGGCTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGG
TAGTGAATTTTGAGGGAGTGCGGCGACGTAAGCAAAGGGTTCTAGGGCAC
AGCTTTGTGATAAAAATCTATACAAGGCGGAATGATAGGGTTGGAGACGA
AGATAAGGAATTTGTGGAGACCAGCATTCTCTTCACAAAGCATAACACCG
GCCGAAAACACGCACGGCAGCAAGCCGCGGAGATCAACAAATACGCCAGG
GGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAACGCCTT
GGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGCCCTAC
TGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACAAATAA
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCAG
CGTCCTCAACACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTT
GAACGGTACCGAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCC
CCGCGGTCGGCTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGG
TAGTGAATTTTGAGGGAGTGCGGCGACGTAAGCAAAGGGTTCTAGGGCAC
AGCTTTGTGATAAAAATCTATACAAGGCGGAATGATAGGGTTGGAGACGA
AGATAAGGAATTTGTGGAGACCAGCATTCTCTTCACAAAGCATAACACCG
GCCGAAAACACGCACGGCAGCAAGCCGCGGAGATCAACAAATACGCCAGG
GGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAACGCCTT
GGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGCCCTAC
TGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACAAATAA
ATGGTCCTCGACAATGTCGTTCGCGGCATTGCCCATGCCTTCAAGGTGCG
GCGGGCTCCAATCCTGCCCACGTCCTTTGATAGTCCCCGCCGGCGTCGTA
GAATCCGTCATGTGGCAGACACGGCCTCCTACTATGCCTCCCGCCTCCGC
AAAACCAAGGTGCCCGAGGTCTCCTTTGTACAAGCGGCCACCTATGTGTG
GGTATTCGTTTCTCTTGTCGTGGCGTTGATTGGCTACGCGTCGTGCTCAG
CGTCCTCAACACGGACCCTCCTTCATTGCACACCAACTGCGTGTACGTTT
GAACGGTACCGAGGCACCGGCAAAGTACCTTTGGAGGATGTGTCGTTTCC
CCGCGGTCGGCTTCTTGGTTCCCAGAGCGTCCGCACCCGCAACGGCGAGG
TAGTGAATTTTGAGGGAGTGCGGCGACGTAAGCAAAGGGTTCTAGGGCAC
AGCTTTGTGATAAAAATCTATACAAGGCGGAATGATAGGGTTGGAGACGA
AGATAAGGAATTTGTGGAGACCAGCATTCTCTTCACAAAGCATAACACCG
GCCGAAAACACGCACGGCAGCAAGCCGCGGAGATCAACAAATACGCCAGG
GGTGAGTTGGACTGGCTGGAAATCGTGGAGGTCAAGAAATGGAACGCCTT
GGGCATACTTGCCGTGGTCGCTGGCCTCGTTTCCACCGTTTTTGCCCTAC
TGTTGGGAGATGTGTTCGGGCATGGCAATGATGATGGAAAGAACAAATAA

Synonyms

Publications