jgi.p|Nanoce1779_2|629927, mRNA_4678 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629927
Unique Name	mRNA_4678
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2627
Alignment location	scaffold_9:362505..365131 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630013
Track	FilteredModels2
ProteinId	629927

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:362505..365131 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629927	gene_4678	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629927	mRNA_4678-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4678	CDS_4678	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:362505..365131-
coding sequence from alignment at scaffold_9:362505..365131-

mRNA sequence

>mRNA_4678 ID=mRNA_4678|Name=jgi.p|Nanoce1779_2|629927|organism=Nannochloropsis oceanica|type=mRNA|length=2627bp
ATAGTGCTCGTGTGCTCTCGCTTCCCCTGTAGTGGTTATGGTTGTAGGAG
TGCGATGACGCCGTGAGTGAGGGTGGAAGAAGTTGGTGTGGAGGCAAGGT
CGTGGTTTGGAAGTGGTGCCATGCAAGGACCGGAACACAAAAAAAGGGAA
TCAAAGGGATGGATTGCAGTGGATGTCTGTGCGTTTGGTGTGGTGTACGT
GGTATGGTTCTGTGATAAAGAAGACAACCTGGAGGCCGCCAACACTCTCG
GTTTCTATCGGCGATGCCATCACGCATACAGCTCCCGCAGACACAGCCAA
GCACAATCACAGACTAGCCATGGCAAGCATGTAAATGTGCCTGTGACTAA
AGCTGATGGCCATCATAGGTCTTTGTCCTCTACCTTTGACCAAGCATTGC
TTGTTTTCATCCTCCGGGTCTCTTCTCGTCTCATCACACCGTGGAGCAGA
CGCTTGGAGCCTGAACATCGCAATGTTAAATGTAATAAGCAAGCCACCAC
CACAACCACACAGGTACGCGTCTTACCAATATTCTGTGAGAACACTAGCG
GCTTCGACCAGCCTAGGTCCAGAGGGCGGGCCTCCTCGCTCCCAGACCTA
CGACCACCAACAAGCAGCAGCATGCATCGACCCTTGGACGTAGATATGCG
GTCCACACACCAACACCGACAGCTAGAACGAGCCGCTGGAAGCAGCCAGG
TATCGACGGGCGGCGCGTTGTTAGCCTTTGCGTATCGGCATGCCTCGAAG
GGCTTCGCCGTACTGGCCGTGGGCCTGGTCATCGCCACGGTCGTGTCACG
GCACCCTTCGGAAAGCGCCTCCGACAACGGAGGGATAGCCGGCTTGTCGG
GCCCCCTCTTTGGGGGTGGGAGCAGTAGTACGACCAATGTGGGTGGTACG
TACGAATGTATTCCTAACGTTGATTATCAAGACTTTGGTTCCTCGTTCAA
GGGCGTGTCGCGGCGGGACTGTGCTTCTCTGTGCAATGCCATGCCCAATT
GCCGGGTCTGGCAACACTCGACCAACGCCGGGGGGAGTTGCACAACCCGC
TACAACAACTACACGAGCTTCGTCTCGGCCCATGAGGGCGTGGAATCCTG
TCTGCAGATGTCGCACAATCCTCCCGACATGACGGCGTTCCTCGGGGTCG
CGCACTGGCAAGGCTGTTACTACAAAACAGCGAAGCCTTTCCTCCTGGAC
GGGGCCGACGAAGTCCGTCGCTTGGGTGCCAAGATCATTAAAGTTGCCTT
CAATTTCCACGAACCATGGAACGACTACCCCTGGCATTCCCCCGAGTGGC
CAACAGACACGTGGCGGACCTGGACCCCAACCCCTGTGGACGTGGCCAGA
CACCCCTATTGGAAGTCACTTTTTGAGATGGATTTTGACACCTACATCCT
CATCGCCTACTCTAACGTCGCCCGAAGTTCCCCTGACCCCGAAGATTGGA
AAGCCTGGCTCGACCCTTGGTATTGGGTATTTGAAGATCCGACCTCTCAG
CAGCTCCGCGACGAGACCGCACAATTTTATGAGCTGACCGAGCATTTGCT
CACGGCATACGTGCACAAAACCTTTGTGCTGCAAATGTGGGAGGGGGACT
GGACGTTGCGACAAGATTTACCTGTGGACCAACGATACAACACTACTGCC
TCCGTGAGCAGGATTAAGGCAGATCGGATGGTCAAGTGGCTGGAGGCGCG
GCAGGCGGGGGTGACGAAAGCCCGGAAGGCTGTGGGGCACAAGGCAGGCG
CTACCAAGGTTTACCACGCCACAGAAGTGAATTTGGTAAGGGAATCTGCC
AAAGAATACGCGCAAAGCGGACGCGTGACGCACCGGCAGGATATGGTGAC
GACAGTGTTGCCCCGGGTGGCGTTGGACATGGTTTCTTATTCGGCCTATG
ACTCAACTCTCATCCCAGAGGCTTCCACCGGGGCGTTTTTTGAGGCTTTG
CGATTTATTCAACGAATGCATCGACGCACTCCCGAATCACCGGAGAAAGC
TGTGTATGTAGGGGAGTTCGGTGTGAATACCATGAGCACGGACTGGGATG
ATAGCATGGAGAAGATAAAGAATGCTGTGAATGTTGGTGCAGCTGCAGGG
TTGGCCTACTTGATTTACTGGCAAATGTACGACAATGCTCTAAATCCAAA
AGGCAAGGAACATTACGGTTTGGATTTGTGTGACTTCCGAATGGTGGCCA
AGGGTCCGGTGTATGACCAGCAATATTTGGAAGGCTTCTTCCTGCAGCAT
CCGGACATGGAGTACCTGCGACCACCGGCTTCGTATTTGAAAAAAATCCT
TCACGGGAAATTTGACGAGGTGAGGTAGAACTTATTAAGAACAGACGTAA
CATATGTTGTCTGTGGAAGAAGGAGCTTGGGGTTTCCGATTTTGGACTTG
GCCAGTCATTGCTTCTGCGGGACTAATGTGCCCCGCCATGACCTGCGGGA
GGATTTCATGTAAGAGGAGGAAGTGCGACTGCGGCCATAGATGTACCATA
GAAATGCGAAGACTGAAGGACTAAGTAACAAGAAGTTCATACATGAACTT
TTGAGAGACACAAGGACTGCGAGCCTACAGCAAATAACGAGTAATGCAAA
AAGGAATTGACAAAGTGTAACCTCCCC

protein sequence of jgi.p|Nanoce1779_2|629927

>mRNA_4678-protein ID=mRNA_4678-protein|Name=jgi.p|Nanoce1779_2|629927|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp
MQGPEHKKRESKGWIAVDVCAFGVVYVVWFCDKEDNLEAANTLGFYRRCH
HAYSSRRHSQAQSQTSHGKHVNVPVTKADGHHRSLSSTFDQALLVFILRV
SSRLITPWSRRLEPEHRNVKCNKQATTTTTQVRVLPIFCENTSGFDQPRS
RGRASSLPDLRPPTSSSMHRPLDVDMRSTHQHRQLERAAGSSQVSTGGAL
LAFAYRHASKGFAVLAVGLVIATVVSRHPSESASDNGGIAGLSGPLFGGG
SSSTTNVGGTYECIPNVDYQDFGSSFKGVSRRDCASLCNAMPNCRVWQHS
TNAGGSCTTRYNNYTSFVSAHEGVESCLQMSHNPPDMTAFLGVAHWQGCY
YKTAKPFLLDGADEVRRLGAKIIKVAFNFHEPWNDYPWHSPEWPTDTWRT
WTPTPVDVARHPYWKSLFEMDFDTYILIAYSNVARSSPDPEDWKAWLDPW
YWVFEDPTSQQLRDETAQFYELTEHLLTAYVHKTFVLQMWEGDWTLRQDL
PVDQRYNTTASVSRIKADRMVKWLEARQAGVTKARKAVGHKAGATKVYHA
TEVNLVRESAKEYAQSGRVTHRQDMVTTVLPRVALDMVSYSAYDSTLIPE
ASTGAFFEALRFIQRMHRRTPESPEKAVYVGEFGVNTMSTDWDDSMEKIK
NAVNVGAAAGLAYLIYWQMYDNALNPKGKEHYGLDLCDFRMVAKGPVYDQ
QYLEGFFLQHPDMEYLRPPASYLKKILHGKFDEVR*

mRNA from alignment at scaffold_9:362505..365131-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4678 ID=mRNA_4678|Name=jgi.p|Nanoce1779_2|629927|organism=Nannochloropsis oceanica|type=mRNA|length=2627bp|location=Sequence derived from alignment at scaffold_9:362505..365131- (Nannochloropsis oceanica)
ATAGTGCTCGTGTGCTCTCGCTTCCCCTGTAGTGGTTATGGTTGTAGGAG
TGCGATGACGCCGTGAGTGAGGGTGGAAGAAGTTGGTGTGGAGGCAAGGT
CGTGGTTTGGAAGTGGTGCCATGCAAGGACCGGAACACAAAAAAAGGGAA
TCAAAGGGATGGATTGCAGTGGATGTCTGTGCGTTTGGTGTGGTGTACGT
GGTATGGTTCTGTGATAAAGAAGACAACCTGGAGGCCGCCAACACTCTCG
GTTTCTATCGGCGATGCCATCACGCATACAGCTCCCGCAGACACAGCCAA
GCACAATCACAGACTAGCCATGGCAAGCATGTAAATGTGCCTGTGACTAA
AGCTGATGGCCATCATAGGTCTTTGTCCTCTACCTTTGACCAAGCATTGC
TTGTTTTCATCCTCCGGGTCTCTTCTCGTCTCATCACACCGTGGAGCAGA
CGCTTGGAGCCTGAACATCGCAATGTTAAATGTAATAAGCAAGCCACCAC
CACAACCACACAGGTACGCGTCTTACCAATATTCTGTGAGAACACTAGCG
GCTTCGACCAGCCTAGGTCCAGAGGGCGGGCCTCCTCGCTCCCAGACCTA
CGACCACCAACAAGCAGCAGCATGCATCGACCCTTGGACGTAGATATGCG
GTCCACACACCAACACCGACAGCTAGAACGAGCCGCTGGAAGCAGCCAGG
TATCGACGGGCGGCGCGTTGTTAGCCTTTGCGTATCGGCATGCCTCGAAG
GGCTTCGCCGTACTGGCCGTGGGCCTGGTCATCGCCACGGTCGTGTCACG
GCACCCTTCGGAAAGCGCCTCCGACAACGGAGGGATAGCCGGCTTGTCGG
GCCCCCTCTTTGGGGGTGGGAGCAGTAGTACGACCAATGTGGGTGGTACG
TACGAATGTATTCCTAACGTTGATTATCAAGACTTTGGTTCCTCGTTCAA
GGGCGTGTCGCGGCGGGACTGTGCTTCTCTGTGCAATGCCATGCCCAATT
GCCGGGTCTGGCAACACTCGACCAACGCCGGGGGGAGTTGCACAACCCGC
TACAACAACTACACGAGCTTCGTCTCGGCCCATGAGGGCGTGGAATCCTG
TCTGCAGATGTCGCACAATCCTCCCGACATGACGGCGTTCCTCGGGGTCG
CGCACTGGCAAGGCTGTTACTACAAAACAGCGAAGCCTTTCCTCCTGGAC
GGGGCCGACGAAGTCCGTCGCTTGGGTGCCAAGATCATTAAAGTTGCCTT
CAATTTCCACGAACCATGGAACGACTACCCCTGGCATTCCCCCGAGTGGC
CAACAGACACGTGGCGGACCTGGACCCCAACCCCTGTGGACGTGGCCAGA
CACCCCTATTGGAAGTCACTTTTTGAGATGGATTTTGACACCTACATCCT
CATCGCCTACTCTAACGTCGCCCGAAGTTCCCCTGACCCCGAAGATTGGA
AAGCCTGGCTCGACCCTTGGTATTGGGTATTTGAAGATCCGACCTCTCAG
CAGCTCCGCGACGAGACCGCACAATTTTATGAGCTGACCGAGCATTTGCT
CACGGCATACGTGCACAAAACCTTTGTGCTGCAAATGTGGGAGGGGGACT
GGACGTTGCGACAAGATTTACCTGTGGACCAACGATACAACACTACTGCC
TCCGTGAGCAGGATTAAGGCAGATCGGATGGTCAAGTGGCTGGAGGCGCG
GCAGGCGGGGGTGACGAAAGCCCGGAAGGCTGTGGGGCACAAGGCAGGCG
CTACCAAGGTTTACCACGCCACAGAAGTGAATTTGGTAAGGGAATCTGCC
AAAGAATACGCGCAAAGCGGACGCGTGACGCACCGGCAGGATATGGTGAC
GACAGTGTTGCCCCGGGTGGCGTTGGACATGGTTTCTTATTCGGCCTATG
ACTCAACTCTCATCCCAGAGGCTTCCACCGGGGCGTTTTTTGAGGCTTTG
CGATTTATTCAACGAATGCATCGACGCACTCCCGAATCACCGGAGAAAGC
TGTGTATGTAGGGGAGTTCGGTGTGAATACCATGAGCACGGACTGGGATG
ATAGCATGGAGAAGATAAAGAATGCTGTGAATGTTGGTGCAGCTGCAGGG
TTGGCCTACTTGATTTACTGGCAAATGTACGACAATGCTCTAAATCCAAA
AGGCAAGGAACATTACGGTTTGGATTTGTGTGACTTCCGAATGGTGGCCA
AGGGTCCGGTGTATGACCAGCAATATTTGGAAGGCTTCTTCCTGCAGCAT
CCGGACATGGAGTACCTGCGACCACCGGCTTCGTATTTGAAAAAAATCCT
TCACGGGAAATTTGACGAGGTGAGGTAGAACTTATTAAGAACAGACGTAA
CATATGTTGTCTGTGGAAGAAGGAGCTTGGGGTTTCCGATTTTGGACTTG
GCCAGTCATTGCTTCTGCGGGACTAATGTGCCCCGCCATGACCTGCGGGA
GGATTTCATGTAAGAGGAGGAAGTGCGACTGCGGCCATAGATGTACCATA
GAAATGCGAAGACTGAAGGACTAAGTAACAAGAAGTTCATACATGAACTT
TTGAGAGACACAAGGACTGCGAGCCTACAGCAAATAACGAGTAATGCAAA
AAGGAATTGACAAAGTGTAACCTCCCC

Coding sequence (CDS) from alignment at scaffold_9:362505..365131-

>mRNA_4678 ID=mRNA_4678|Name=jgi.p|Nanoce1779_2|629927|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_9:362505..365131- (Nannochloropsis oceanica)
ATGCAAGGACCGGAACACAAAAAAAGGGAATCAAAGGGATGGATTGCAGT
GGATGTCTGTGCGTTTGGTGTGGTGTACGTGGTATGGTTCTGTGATAAAG
AAGACAACCTGGAGGCCGCCAACACTCTCGGTTTCTATCGGCGATGCCAT
CACGCATACAGCTCCCGCAGACACAGCCAAGCACAATCACAGACTAGCCA
TGGCAAGCATGTAAATGTGCCTGTGACTAAAGCTGATGGCCATCATAGGT
CTTTGTCCTCTACCTTTGACCAAGCATTGCTTGTTTTCATCCTCCGGGTC
TCTTCTCGTCTCATCACACCGTGGAGCAGACGCTTGGAGCCTGAACATCG
CAATGTTAAATGTAATAAGCAAGCCACCACCACAACCACACAGGTACGCG
TCTTACCAATATTCTGTGAGAACACTAGCGGCTTCGACCAGCCTAGGTCC
AGAGGGCGGGCCTCCTCGCTCCCAGACCTACGACCACCAACAAGCAGCAG
CATGCATCGACCCTTGGACGTAGATATGCGGTCCACACACCAACACCGAC
AGCTAGAACGAGCCGCTGGAAGCAGCCAGGTATCGACGGGCGGCGCGTTG
TTAGCCTTTGCGTATCGGCATGCCTCGAAGGGCTTCGCCGTACTGGCCGT
GGGCCTGGTCATCGCCACGGTCGTGTCACGGCACCCTTCGGAAAGCGCCT
CCGACAACGGAGGGATAGCCGGCTTGTCGGGCCCCCTCTTTGGGGGTGGG
AGCAGTAGTACGACCAATGTGGGTGGTACGTACGAATGTATTCCTAACGT
TGATTATCAAGACTTTGGTTCCTCGTTCAAGGGCGTGTCGCGGCGGGACT
GTGCTTCTCTGTGCAATGCCATGCCCAATTGCCGGGTCTGGCAACACTCG
ACCAACGCCGGGGGGAGTTGCACAACCCGCTACAACAACTACACGAGCTT
CGTCTCGGCCCATGAGGGCGTGGAATCCTGTCTGCAGATGTCGCACAATC
CTCCCGACATGACGGCGTTCCTCGGGGTCGCGCACTGGCAAGGCTGTTAC
TACAAAACAGCGAAGCCTTTCCTCCTGGACGGGGCCGACGAAGTCCGTCG
CTTGGGTGCCAAGATCATTAAAGTTGCCTTCAATTTCCACGAACCATGGA
ACGACTACCCCTGGCATTCCCCCGAGTGGCCAACAGACACGTGGCGGACC
TGGACCCCAACCCCTGTGGACGTGGCCAGACACCCCTATTGGAAGTCACT
TTTTGAGATGGATTTTGACACCTACATCCTCATCGCCTACTCTAACGTCG
CCCGAAGTTCCCCTGACCCCGAAGATTGGAAAGCCTGGCTCGACCCTTGG
TATTGGGTATTTGAAGATCCGACCTCTCAGCAGCTCCGCGACGAGACCGC
ACAATTTTATGAGCTGACCGAGCATTTGCTCACGGCATACGTGCACAAAA
CCTTTGTGCTGCAAATGTGGGAGGGGGACTGGACGTTGCGACAAGATTTA
CCTGTGGACCAACGATACAACACTACTGCCTCCGTGAGCAGGATTAAGGC
AGATCGGATGGTCAAGTGGCTGGAGGCGCGGCAGGCGGGGGTGACGAAAG
CCCGGAAGGCTGTGGGGCACAAGGCAGGCGCTACCAAGGTTTACCACGCC
ACAGAAGTGAATTTGGTAAGGGAATCTGCCAAAGAATACGCGCAAAGCGG
ACGCGTGACGCACCGGCAGGATATGGTGACGACAGTGTTGCCCCGGGTGG
CGTTGGACATGGTTTCTTATTCGGCCTATGACTCAACTCTCATCCCAGAG
GCTTCCACCGGGGCGTTTTTTGAGGCTTTGCGATTTATTCAACGAATGCA
TCGACGCACTCCCGAATCACCGGAGAAAGCTGTGTATGTAGGGGAGTTCG
GTGTGAATACCATGAGCACGGACTGGGATGATAGCATGGAGAAGATAAAG
AATGCTGTGAATGTTGGTGCAGCTGCAGGGTTGGCCTACTTGATTTACTG
GCAAATGTACGACAATGCTCTAAATCCAAAAGGCAAGGAACATTACGGTT
TGGATTTGTGTGACTTCCGAATGGTGGCCAAGGGTCCGGTGTATGACCAG
CAATATTTGGAAGGCTTCTTCCTGCAGCATCCGGACATGGAGTACCTGCG
ACCACCGGCTTCGTATTTGAAAAAAATCCTTCACGGGAAATTTGACGAGG
TGAGGTAG

Synonyms

Publications