jgi.p|Nanoce1779_2|629925, mRNA_4676 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629925
Unique Name	mRNA_4676
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3079
Alignment location	scaffold_9:356789..360092 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630011
Track	FilteredModels2
ProteinId	629925

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:356789..360092 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629925	gene_4676	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629925	mRNA_4676-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4676	CDS_4676	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:356789..360092+
coding sequence from alignment at scaffold_9:356789..360092+

mRNA sequence

>mRNA_4676 ID=mRNA_4676|Name=jgi.p|Nanoce1779_2|629925|organism=Nannochloropsis oceanica|type=mRNA|length=3079bp
ACAGGCCTCTGGCCACGTGGTAGATGTCCAGCAGCAACGTCTCTGTCTGC
CGAGGTCTCCGCACCAAACCATGCAAGAACCCAGCTCGACAGTGGGGGGG
GAGGTCAGAGCCCTCTGGAGCACCGAGACAACCTTGCTGGAGAGCCTCAT
GTACCGCAACAAAAACCAGCACGGGAGGGCCGGCTATTGGAAGAGACTGC
AGGAGGTCAAGCGGCGGACAAAGGAGCTCGATGTGCCGGGATTGCTGGAA
CTGTTGGCCACGGTACGACATGATCTGTCAGTGGGAATGCGAGGAATGCA
GCCGCAGAGGCAGCAAACGAAAACAAATGCGCAAGCTCTTGTCGCAAGGA
GATGCGCCGCCGTAGGTATGGCCATCCAGCAGTGCTGCGCGGCCTTGAAG
GCGTGCACAGGAGCGGCGGAGTTGTTGGTGAGTGAAGTGGCTCAAGGCTA
CTTCTTAAACTTACTGGTTGTATTCCTGGCCATGTTGGGGCGGCTGAGTA
CGCTTCTCCGACACGTAGGCACGCTGGCATTCGGGTTGTATCAGGCTTTA
GAAGGACGGATAGGGAAGGCGGGGAAGGAAGGAGGAAGGGAGCAAGGCAT
TAGACCGCGCCTCTCAATGCAGAAATTTTCAAATGTTTTGGGATTGCATG
CTGTTTCGCGTGAGGAGGAGACAACAGTGGAAGTGGCTTCAGCTAAGCGC
CAAGTTAAAGCAGGGCAAGACGACGACGACGACGACGACGACGACCTCGG
GGTCTCCTTGGGCGTTGCCGCCGCAGCTGCCTCCCTTAACTTACCCTTTC
ATGCCGCTCCCGTGCTTTCTTTCAGAACGAGGATCATCCCAGCTTCTACA
ACTTCCAGTGTCTCAAATGCAGCCGCTGCATCCACCACCGGGAAGACTGC
TGTTGCGTCGCGAGCCATGCTGGTGAGCGAGTACAGTTCGTCCAGCGAGG
AAGAAGAGGAAGAGGTAAACGATGACAAGGCGCCAGCAAAGCAGCCACAT
CCACAATCACAGTCATCTAGGCCGTTGTTGCCCACGGCGGACGAATTGAA
ACAAGAAGAGAAGGACATCTCCTTGGAAACCACCTTACATTTTGTCATCG
ACCGAAAACCAGGTATAAGCAGCAAGGGGAATGAGAAACTTGCAAAAGAG
CAGCAGAATCAGCGGCCTTCTCCTCAGGAAAAAGTTTCCAGGGCGCCTAC
TGTCGCTTCAACCGGAGCGGCAAAGAAGATGAAGACTAATAAGGACAAAC
AGAAAGAGATGTGGAAGGCTAATCGAGGGTCGCTATTAGATGAAATAGAC
GATATATTCAAGGCCACCGTGGCAAAAAAAGCCAAGAAAAGAAAGATTAA
AAATTAGAAAGACACACAATAGATGAAAACAATGAAATACCTCTGAACAG
GGAAATGAGCCAACAATTTGACATTCTTTACTAACGTGCGCATGGGCGAG
CACTCAGTCCCCATGTGCTCGCCTAGTGCACTTTTTCGGACCATCTACTT
GAGGACAAATGGTAAATCTCTCCTATCCGTCATCTTCTATTAATAAAAAG
AATTTAACCAACAGAATTCTCCACTTTTTGCCCCCAGCTCTCGTGGCTTT
CCTCTTCTCATACCGGATGTCTTCGATAAAACGAAGACAAGACACAGAAA
TTAACACAAAGATCAAAACCCAAGCGAATCCGGGCCTTTTCTGGTATATT
TCCACGTCGTCGTCCTCGTTCCATCGATATCTTCGACTCCTCCCGCAGAC
TGCACCCCACCGTCTTCTCTCTTTAGTTTCTTCTAATGCGCACACAATGA
AGCCTTCTATAACGAAGAAGATGTGTTTGCCTCTTTTCCGATGGGGCCAA
TATCAAATAAGTGCTCAATGGTAAATGCAAGAGAAAATAGACATGGCCTC
TGTAGGAAGCCACGTCATATTCCTTCACTTATTTGCCTAAAACGGTCTAC
TGCTTTCCTTCATCTCTCTCACTCCTCCATATCAGACGTATAAGAGCAAC
TGTCAATCAAAAAGAGACAACCGAAGGAAGAAAACTCCACTCCCCTGTAC
CCCCGCTGCTCGTCCAAATCCTTTCCTCTTCAAGTATTTCATTTTAGCCT
CGTAAAATCGAAAACAAACAAATTAAAATAGGTTGTGACCCGGAGACGAA
CCATCATCATCCGATTAATGGGCGCCCTTGACACCCTTCACCTGGCTCTT
GCCTCCCGCGGCCATTTCCTCGCGCACCAATTTTGCAGCAGAAACCATGT
TACGAAGAGACGGCAACACCTCCTCCCAACGGCGGGTCTTGAGGCCACAG
TCCGGGTTGAGCCAAATCTTGGAGACATCGATCCCCGCGGCGACATACGC
GCGCGCCTTGGAAGCCATGGACTCAACGCTAGGGACCACAGGCGAGTGCA
CGTCGTAAACACCGGGCCCAATATCGCGGCTGTAGCCATAGGTCGCCAGC
GCCTTAACCATATCGTCGCCCGAGCGGGAATTCTCGATTGTCAACACGTC
GGCGTCCAAGGCATCGATGGCACCGAGGATCTCCTCAAAGTCAGAGTAGC
AGAGATGCGTCACGATCTGGCACGCCGACGTGGCCACACCCGTGGAAAGA
CGGAAGGAAGCCGCAGCCCATTCGAGGTATGCTGCCTGGCGGTTCGTCTT
GAGAGGGAGCCCTTCGCGGATAGCGGGGTCATCGACCTGAGATTGTGAGC
GAGGATGAGTACAAAAACGGAGAGGAAATGAAACCATGAAGGTGAGAGGA
GGGAGGGCGAGGACGTACCTGAATAATGCGGCAGCCAGCCTTCTCCAAGT
CGGCAATCTCCTCGCGTAAGGCCAAGGCGATCTGATACGCTTGCTCCGAT
CGCGTAATATCTTTGCGAGGGAAGGACCAGTTAATGCAGGTGACGGCACC
CGTCAACATGCCCTTGACATACGCACGGTTGGTCATGGACTGCGCCAATT
CAAATTCATGCACCGTCATGGGGCCCAGACGAGACACATCGCCTGTAATT
AGGGGCGGACGCACGTAACGCGAGCCGTAGGACTGCACCCAAGCGTGCTG
CGTGAAGGAATACCCCTTCAGCTTCATCC

protein sequence of jgi.p|Nanoce1779_2|629925

>mRNA_4676-protein ID=mRNA_4676-protein|Name=jgi.p|Nanoce1779_2|629925|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MQEPSSTVGGEVRALWSTETTLLESLMYRNKNQHGRAGYWKRLQEVKRRT
KELDVPGLLELLATVRHDLSVGMRGMQPQRQQTKTNAQALVARRCAAVGM
AIQQCCAALKACTGAAELLVSEVAQGYFLNLLVVFLAMLGRLSTLLRHVG
TLAFGLYQALEGRIGKAGKEGGREQGIRPRLSMQKFSNVLGLHAVSREEE
TTVEVASAKRQVKAGQDDDDDDDDDLGVSLGVAAAAASLNLPFHAAPVLS
FRTRIIPASTTSSVSNAAAASTTGKTAVASRAMLVSEYSSSSEEEEEEVN
DDKAPAKQPHPQSQSSRPLLPTADELKQEEKDISLETTLHFVIDRKPGIS
SKGNEKLAKEQQNQRPSPQEKVSRAPTVASTGAAKKMKTNKDKQKEMWKA
NRGSLLDEIDDIFKATVAKKAKKRKIKN*

mRNA from alignment at scaffold_9:356789..360092+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4676 ID=mRNA_4676|Name=jgi.p|Nanoce1779_2|629925|organism=Nannochloropsis oceanica|type=mRNA|length=3304bp|location=Sequence derived from alignment at scaffold_9:356789..360092+ (Nannochloropsis oceanica)
ACAGGCCTCTGGCCACGTGGTAGATGTCCAGCAGCAACGTCTCTGTCTGC
CGAGGTCTCCGCACCAAACCATGCAAGAACCCAGCTCGACAGTGGGGGGG
GAGGTCAGAGCCCTCTGGAGCACCGAGACAACCTTGCTGGAGAGCCTCAT
GTACCGCAACAAAAACCAGCACGGGAGGGCCGGCTATTGGAAGAGACTGC
AGGTAAGGCTTTGACGGGTTGACAGTTCTATCCCTAATTTCTTGAAAGAA
ATGCAAGACACACTTTCTCCTCACCATCCTCACACACATAGGAGGTCAAG
CGGCGGACAAAGGAGCTCGATGTGCCGGGATTGCTGGAACTGTTGGCCAC
GGTACGACATGATCTGTCAGTGGGAATGCGAGGAATGCAGCCGCAGAGGC
AGCAAACGAAAACAAATGCGCAAGCTCTTGTCGCAAGGAGATGCGCCGCC
GTAGGTATGGCCATCCAGCAGTGCTGCGCGGCCTTGAAGGCGTGCACAGG
AGCGGCGGAGTTGTTGGTGAGTGAAGTGGCTCAAGGCTACTTCTTAAACT
TACTGGTTGTATTCCTGGCCATGTTGGGGCGGCTGAGTACGCTTCTCCGA
CACGTAGGCACGCTGGCATTCGGGTTGTATCAGGCTTTAGAAGGACGGAT
AGGGAAGGCGGGGAAGGAAGGAGGAAGGGAGCAAGGCATTAGACCGCGCC
TCTCAATGCAGAAATTTTCAAATGTTTTGGGATTGCATGCTGTTTCGCGT
GAGGAGGAGACAACAGTGGAAGTGGCTTCAGCTAAGCGCCAAGTTAAAGC
AGGGCAAGACGACGACGACGACGACGACGACGACCTCGGGGTCTCCTTGG
GCGTTGCCGCCGCAGCTGCCTCCCTTAACTTACCCTTTCATGCCGCTCCC
GTGCTTTCTTTCAGAACGAGGATCATCCCAGCTTCTACAACTTCCAGTGT
CTCAAATGCAGCCGCTGCATCCACCACCGGGAAGACTGCTGTTGCGTCGC
GAGCCATGCTGGTGAGCGAGTACAGTTCGTCCAGCGAGGAAGAAGAGGAA
GAGGTAAACGATGACAAGGCGCCAGCAAAGCAGCCACATCCACAATCACA
GTCATCTAGGCCGTTGTTGCCCACGGCGGACGAATTGAAACAAGAAGAGA
AGGACATCTCCTTGGAAACCACCTTACATTTTGTCATCGACCGAAAACCA
GGTATAAGCAGCAAGGGGAATGAGAAACTTGCAAAAGAGCAGCAGAATCA
GCGGCCTTCTCCTCAGGAAAAAGTTTCCAGGGCGCCTACTGTCGCTTCAA
CCGGAGCGGCAAAGAAGATGAAGACTAATAAGGACAAACAGAAAGAGATG
TGGAAGGCTAATCGAGGGTCGCTATTAGATGAAATAGACGATATATTCAA
GGCCACCGTGGCAAAAAAAGCCAAGAAAAGAAAGATTAAAAATTAGAAAG
ACACACAATAGATGAAAACAATGAAATACCTCTGAACAGGGAAATGAGCC
AACAATTTGACATTCTTTACTAACGTGCGCATGGGCGAGCACTCAGTCCC
CATGTGCTCGCCTAGTGCACTTTTTCGGACCATCTACTTGAGGACAAATG
GTAAATCTCTCCTATCCGTCATCTTCTATTAATAAAAAGAATTTAACCAA
CAGAATTCTCCACTTTTTGCCCCCAGCTCTCGTGGCTTTCCTCTTCTCAT
ACCGGATGTCTTCGATAAAACGAAGACAAGACACAGAAATTAACACAAAG
ATCAAAACCCAAGCGAATCCGGGCCTTTTCTGGTATATTTCCACGTCGTC
GTCCTCGTTCCATCGATATCTTCGACTCCTCCCGCAGACTGCACCCCACC
GTCTTCTCTCTTTAGTTTCTTCTAATGCGCACACAATGAAGCCTTCTATA
ACGAAGAAGATGTGTTTGCCTCTTTTCCGATGGGGCCAATATCAAATAAG
TGCTCAATGGTAAATGCAAGAGAAAATAGACATGGCCTCTGTAGGAAGCC
ACGTCATATTCCTTCACTTATTTGCCTAAAACGGTCTACTGCTTTCCTTC
ATCTCTCTCACTCCTCCATATCAGACGTATAAGAGCAACTGTCAATCAAA
AAGAGACAACCGAAGGAAGAAAACTCCACTCCCCTGTACCCCCGCTGCTC
GTCCAAATCCTTTCCTCTTCAAGTATTTCATTTTAGCCTCGTAAAATCGA
AAACAAACAAATTAAAATAGGTTGTGACCCGGAGACGAACCATCATCATC
CGATTAATGGGCGCCCTTGACACCCTTCACCTGGCTCTTGCCTCCCGCGG
CCATTTCCTCGCGCACCAATTTTGCAGCAGAAACCATGTTACGAAGAGAC
GGCAACACCTCCTCCCAACGGCGGGTCTTGAGGCCACAGTCCGGGTTGAG
CCAAATCTTGGAGACATCGATCCCCGCGGCGACATACGCGCGCGCCTTGG
AAGCCATGGACTCAACGCTAGGGACCACAGGCGAGTGCACGTCGTAAACA
CCGGGCCCAATATCGCGGCTGTAGCCATAGGTCGCCAGCGCCTTAACCAT
ATCGTCGCCCGAGCGGGAATTCTCGATTGTCAACACGTCGGCGTCCAAGG
CATCGATGGCACCGAGGATCTCCTCTGTATTAGGGCGGGAAGTGGGGAGA
AATGGGTACAGTCATTTGGGGTAAATTTAAATGTAAAATTGTGTGCGTGA
TGTATACGCCCTCTTCACTCTTCCTCTTATTCTCTTTCCCTCGCGTGCGC
TTACACTCACCAAAGTCAGAGTAGCAGAGATGCGTCACGATCTGGCACGC
CGACGTGGCCACACCCGTGGAAAGACGGAAGGAAGCCGCAGCCCATTCGA
GGTATGCTGCCTGGCGGTTCGTCTTGAGAGGGAGCCCTTCGCGGATAGCG
GGGTCATCGACCTGAGATTGTGAGCGAGGATGAGTACAAAAACGGAGAGG
AAATGAAACCATGAAGGTGAGAGGAGGGAGGGCGAGGACGTACCTGAATA
ATGCGGCAGCCAGCCTTCTCCAAGTCGGCAATCTCCTCGCGTAAGGCCAA
GGCGATCTGATACGCTTGCTCCGATCGCGTAATATCTTTGCGAGGGAAGG
ACCAGTTAATGCAGGTGACGGCACCCGTCAACATGCCCTTGACATACGCA
CGGTTGGTCATGGACTGCGCCAATTCAAATTCATGCACCGTCATGGGGCC
CAGACGAGACACATCGCCTGTAATTAGGGGCGGACGCACGTAACGCGAGC
CGTAGGACTGCACCCAAGCGTGCTGCGTGAAGGAATACCCCTTCAGCTTC
ATCC

Coding sequence (CDS) from alignment at scaffold_9:356789..360092+

>mRNA_4676 ID=mRNA_4676|Name=jgi.p|Nanoce1779_2|629925|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_9:356789..360092+ (Nannochloropsis oceanica)
ATGCAAGAACCCAGCTCGACAGTGGGGGGGGAGGTCAGAGCCCTCTGGAG
CACCGAGACAACCTTGCTGGAGAGCCTCATGTACCGCAACAAAAACCAGC
ACGGGAGGGCCGGCTATTGGAAGAGACTGCAGGAGGTCAAGCGGCGGACA
AAGGAGCTCGATGTGCCGGGATTGCTGGAACTGTTGGCCACGGTACGACA
TGATCTGTCAGTGGGAATGCGAGGAATGCAGCCGCAGAGGCAGCAAACGA
AAACAAATGCGCAAGCTCTTGTCGCAAGGAGATGCGCCGCCGTAGGTATG
GCCATCCAGCAGTGCTGCGCGGCCTTGAAGGCGTGCACAGGAGCGGCGGA
GTTGTTGGTGAGTGAAGTGGCTCAAGGCTACTTCTTAAACTTACTGGTTG
TATTCCTGGCCATGTTGGGGCGGCTGAGTACGCTTCTCCGACACGTAGGC
ACGCTGGCATTCGGGTTGTATCAGGCTTTAGAAGGACGGATAGGGAAGGC
GGGGAAGGAAGGAGGAAGGGAGCAAGGCATTAGACCGCGCCTCTCAATGC
AGAAATTTTCAAATGTTTTGGGATTGCATGCTGTTTCGCGTGAGGAGGAG
ACAACAGTGGAAGTGGCTTCAGCTAAGCGCCAAGTTAAAGCAGGGCAAGA
CGACGACGACGACGACGACGACGACCTCGGGGTCTCCTTGGGCGTTGCCG
CCGCAGCTGCCTCCCTTAACTTACCCTTTCATGCCGCTCCCGTGCTTTCT
TTCAGAACGAGGATCATCCCAGCTTCTACAACTTCCAGTGTCTCAAATGC
AGCCGCTGCATCCACCACCGGGAAGACTGCTGTTGCGTCGCGAGCCATGC
TGGTGAGCGAGTACAGTTCGTCCAGCGAGGAAGAAGAGGAAGAGGTAAAC
GATGACAAGGCGCCAGCAAAGCAGCCACATCCACAATCACAGTCATCTAG
GCCGTTGTTGCCCACGGCGGACGAATTGAAACAAGAAGAGAAGGACATCT
CCTTGGAAACCACCTTACATTTTGTCATCGACCGAAAACCAGGTATAAGC
AGCAAGGGGAATGAGAAACTTGCAAAAGAGCAGCAGAATCAGCGGCCTTC
TCCTCAGGAAAAAGTTTCCAGGGCGCCTACTGTCGCTTCAACCGGAGCGG
CAAAGAAGATGAAGACTAATAAGGACAAACAGAAAGAGATGTGGAAGGCT
AATCGAGGGTCGCTATTAGATGAAATAGACGATATATTCAAGGCCACCGT
GGCAAAAAAAGCCAAGAAAAGAAAGATTAAAAATTAGATGCAAGAACCCA
GCTCGACAGTGGGGGGGGAGGTCAGAGCCCTCTGGAGCACCGAGACAACC
TTGCTGGAGAGCCTCATGTACCGCAACAAAAACCAGCACGGGAGGGCCGG
CTATTGGAAGAGACTGCAGGAGGTCAAGCGGCGGACAAAGGAGCTCGATG
TGCCGGGATTGCTGGAACTGTTGGCCACGGTACGACATGATCTGTCAGTG
GGAATGCGAGGAATGCAGCCGCAGAGGCAGCAAACGAAAACAAATGCGCA
AGCTCTTGTCGCAAGGAGATGCGCCGCCGTAGGTATGGCCATCCAGCAGT
GCTGCGCGGCCTTGAAGGCGTGCACAGGAGCGGCGGAGTTGTTGGTGAGT
GAAGTGGCTCAAGGCTACTTCTTAAACTTACTGGTTGTATTCCTGGCCAT
GTTGGGGCGGCTGAGTACGCTTCTCCGACACGTAGGCACGCTGGCATTCG
GGTTGTATCAGGCTTTAGAAGGACGGATAGGGAAGGCGGGGAAGGAAGGA
GGAAGGGAGCAAGGCATTAGACCGCGCCTCTCAATGCAGAAATTTTCAAA
TGTTTTGGGATTGCATGCTGTTTCGCGTGAGGAGGAGACAACAGTGGAAG
TGGCTTCAGCTAAGCGCCAAGTTAAAGCAGGGCAAGACGACGACGACGAC
GACGACGACGACCTCGGGGTCTCCTTGGGCGTTGCCGCCGCAGCTGCCTC
CCTTAACTTACCCTTTCATGCCGCTCCCGTGCTTTCTTTCAGAACGAGGA
TCATCCCAGCTTCTACAACTTCCAGTGTCTCAAATGCAGCCGCTGCATCC
ACCACCGGGAAGACTGCTGTTGCGTCGCGAGCCATGCTGGTGAGCGAGTA
CAGTTCGTCCAGCGAGGAAGAAGAGGAAGAGGTAAACGATGACAAGGCGC
CAGCAAAGCAGCCACATCCACAATCACAGTCATCTAGGCCGTTGTTGCCC
ACGGCGGACGAATTGAAACAAGAAGAGAAGGACATCTCCTTGGAAACCAC
CTTACATTTTGTCATCGACCGAAAACCAGGTATAAGCAGCAAGGGGAATG
AGAAACTTGCAAAAGAGCAGCAGAATCAGCGGCCTTCTCCTCAGGAAAAA
GTTTCCAGGGCGCCTACTGTCGCTTCAACCGGAGCGGCAAAGAAGATGAA
GACTAATAAGGACAAACAGAAAGAGATGTGGAAGGCTAATCGAGGGTCGC
TATTAGATGAAATAGACGATATATTCAAGGCCACCGTGGCAAAAAAAGCC
AAGAAAAGAAAGATTAAAAATTAG

Synonyms

Publications