jgi.p|Nanoce1779_2|587461, mRNA_4675 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587461
Unique NamemRNA_4675
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1495
Alignment locationscaffold_9:354619..356113 -

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Properties
Property NameValue
TranscriptId587547
TrackFilteredModels2
ProteinId587461
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:354619..356113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587461gene_4675Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587461mRNA_4675-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4675CDS_4675Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4675 ID=mRNA_4675|Name=jgi.p|Nanoce1779_2|587461|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp
GTGGGTCCTTGCGTGCAGAGGAGGTAAGAGATGCATTATTATGCAAACTT
TTTATTTGTTACGTCGGCAAAAGCCTTTTGATTGACCTCATATTGCACCA
GTCTCCCAGCTAGCACAATCTTTTCACTCATCAAGCCTCTCAGTTTCCTT
ATTCTCCACCACAAACACCATATACACGTACTACAGCGGGTTCTTGGTAC
CTCGGGTGGTGGCATGGGTGCAAAGCGCCCCAATTCAGCAAGCCATCGGA
GTACGCGTACCGAATCCGAGGATTGGGGCCGGCAAGGGCACGCTTATACC
AAAATGGTGCATCTTTTCAGCCACCTCCCTCAGTACTCCAAACGCTCCAC
CCTCTCACGTACCGTCAGCTTGAGCAAGCCAGAGTTGCATCCAGCTGTGG
TTACGCTTGGTCTGCTATATGCCGACGGGTCGGTGCGTGGTTCAAATGCA
CGTACGGCGGCCATGCTTCTGGCGTTCAAGGAAGTTGTCCTTGCTTACCA
ACTACCCCCTGGGAAGGTCTTGCGTCTTGACCTTGACAAGGCCTTAAAGC
CCCATATTCAATATTTGATCGACTGCCGCCCGCATTCCATCGCTATGGGC
AATGCCATTAAGTGGCTGCGAGGGCAAATTCACGGTTTGGACCGAGAGGC
GGGGCCGGTTGAAGCCAAGGAGAAGATCGGGGAGGTCATTGACGCCTACG
TGGAGGAGAGGATTACCTTTGCTGCGCAGGCTTTGGCGAAGGTAGCTGTA
GACAAGATCTCAGATGGAGACGTTGTATTGGTTTACGGGCGGTCCTATTC
GGTGGAGCTGACTTTGTTGAAGGCCAAGACGCAGGGGAAGAGTTTCAGGG
TGCTGGTGGTAGACTCCCGTCCGCTTTTGGAAGGGCGACGATTGCTTACC
ACACTGTCGAAGGCGGGAGTGAGTAGTACGTACCTGAATTTAAACGCCGT
TTCGTATGTGATGAGGGGAGTTTCTAAGGTCTTGCTGGGTGCGGCTGCCA
TGTTCTCGAACGGCGCGGTTATCTCTCGAGCAGGGACTGCTGTAGTGGCC
ATGCTAGCCCGACGCTTTAATATTCCCGCTATTTTCTGCTGTGAGACGTA
CAAATTTTCAGATAAAGTGCAACTTGATTCTATTTGCTGGAATGAAGTAG
GGGACCCCTTAGAACTCCTGCGGCCTGCGGGGAGTAATGGGGAGACAGGA
GGGCAGACTGGGCAGTTGCAGGGAAGGGATATGCAGGTGGCAGCAGCGGC
GTTGCCCCCACGGTTGAAGTTGTTAAATATCCGTTATGATTTAACACCGA
TGAAGTATGTATCTTTGGTGATTACGGAAGTTGGCATGATCCCACCGACA
AGTGTGCCAGTGCTTTTGCGGGAGAGCAGTAAGGATGATGTTAATTTGAG
CTTTGAGTTTTAGCCATGAGTGGCAAAAGGAGAGGGGGAGGATGAGACCG
GTAGCAGATTGAATGAGGAGACAATAATTTCTTAAACCGAGTAGC
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protein sequence of jgi.p|Nanoce1779_2|587461

>mRNA_4675-protein ID=mRNA_4675-protein|Name=jgi.p|Nanoce1779_2|587461|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MGAKRPNSASHRSTRTESEDWGRQGHAYTKMVHLFSHLPQYSKRSTLSRT
VSLSKPELHPAVVTLGLLYADGSVRGSNARTAAMLLAFKEVVLAYQLPPG
KVLRLDLDKALKPHIQYLIDCRPHSIAMGNAIKWLRGQIHGLDREAGPVE
AKEKIGEVIDAYVEERITFAAQALAKVAVDKISDGDVVLVYGRSYSVELT
LLKAKTQGKSFRVLVVDSRPLLEGRRLLTTLSKAGVSSTYLNLNAVSYVM
RGVSKVLLGAAAMFSNGAVISRAGTAVVAMLARRFNIPAIFCCETYKFSD
KVQLDSICWNEVGDPLELLRPAGSNGETGGQTGQLQGRDMQVAAAALPPR
LKLLNIRYDLTPMKYVSLVITEVGMIPPTSVPVLLRESSKDDVNLSFEF*
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mRNA from alignment at scaffold_9:354619..356113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4675 ID=mRNA_4675|Name=jgi.p|Nanoce1779_2|587461|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp|location=Sequence derived from alignment at scaffold_9:354619..356113- (Nannochloropsis oceanica)
GTGGGTCCTTGCGTGCAGAGGAGGTAAGAGATGCATTATTATGCAAACTT
TTTATTTGTTACGTCGGCAAAAGCCTTTTGATTGACCTCATATTGCACCA
GTCTCCCAGCTAGCACAATCTTTTCACTCATCAAGCCTCTCAGTTTCCTT
ATTCTCCACCACAAACACCATATACACGTACTACAGCGGGTTCTTGGTAC
CTCGGGTGGTGGCATGGGTGCAAAGCGCCCCAATTCAGCAAGCCATCGGA
GTACGCGTACCGAATCCGAGGATTGGGGCCGGCAAGGGCACGCTTATACC
AAAATGGTGCATCTTTTCAGCCACCTCCCTCAGTACTCCAAACGCTCCAC
CCTCTCACGTACCGTCAGCTTGAGCAAGCCAGAGTTGCATCCAGCTGTGG
TTACGCTTGGTCTGCTATATGCCGACGGGTCGGTGCGTGGTTCAAATGCA
CGTACGGCGGCCATGCTTCTGGCGTTCAAGGAAGTTGTCCTTGCTTACCA
ACTACCCCCTGGGAAGGTCTTGCGTCTTGACCTTGACAAGGCCTTAAAGC
CCCATATTCAATATTTGATCGACTGCCGCCCGCATTCCATCGCTATGGGC
AATGCCATTAAGTGGCTGCGAGGGCAAATTCACGGTTTGGACCGAGAGGC
GGGGCCGGTTGAAGCCAAGGAGAAGATCGGGGAGGTCATTGACGCCTACG
TGGAGGAGAGGATTACCTTTGCTGCGCAGGCTTTGGCGAAGGTAGCTGTA
GACAAGATCTCAGATGGAGACGTTGTATTGGTTTACGGGCGGTCCTATTC
GGTGGAGCTGACTTTGTTGAAGGCCAAGACGCAGGGGAAGAGTTTCAGGG
TGCTGGTGGTAGACTCCCGTCCGCTTTTGGAAGGGCGACGATTGCTTACC
ACACTGTCGAAGGCGGGAGTGAGTAGTACGTACCTGAATTTAAACGCCGT
TTCGTATGTGATGAGGGGAGTTTCTAAGGTCTTGCTGGGTGCGGCTGCCA
TGTTCTCGAACGGCGCGGTTATCTCTCGAGCAGGGACTGCTGTAGTGGCC
ATGCTAGCCCGACGCTTTAATATTCCCGCTATTTTCTGCTGTGAGACGTA
CAAATTTTCAGATAAAGTGCAACTTGATTCTATTTGCTGGAATGAAGTAG
GGGACCCCTTAGAACTCCTGCGGCCTGCGGGGAGTAATGGGGAGACAGGA
GGGCAGACTGGGCAGTTGCAGGGAAGGGATATGCAGGTGGCAGCAGCGGC
GTTGCCCCCACGGTTGAAGTTGTTAAATATCCGTTATGATTTAACACCGA
TGAAGTATGTATCTTTGGTGATTACGGAAGTTGGCATGATCCCACCGACA
AGTGTGCCAGTGCTTTTGCGGGAGAGCAGTAAGGATGATGTTAATTTGAG
CTTTGAGTTTTAGCCATGAGTGGCAAAAGGAGAGGGGGAGGATGAGACCG
GTAGCAGATTGAATGAGGAGACAATAATTTCTTAAACCGAGTAGC
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Coding sequence (CDS) from alignment at scaffold_9:354619..356113-

>mRNA_4675 ID=mRNA_4675|Name=jgi.p|Nanoce1779_2|587461|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_9:354619..356113- (Nannochloropsis oceanica)
ATGGGTGCAAAGCGCCCCAATTCAGCAAGCCATCGGAGTACGCGTACCGA
ATCCGAGGATTGGGGCCGGCAAGGGCACGCTTATACCAAAATGGTGCATC
TTTTCAGCCACCTCCCTCAGTACTCCAAACGCTCCACCCTCTCACGTACC
GTCAGCTTGAGCAAGCCAGAGTTGCATCCAGCTGTGGTTACGCTTGGTCT
GCTATATGCCGACGGGTCGGTGCGTGGTTCAAATGCACGTACGGCGGCCA
TGCTTCTGGCGTTCAAGGAAGTTGTCCTTGCTTACCAACTACCCCCTGGG
AAGGTCTTGCGTCTTGACCTTGACAAGGCCTTAAAGCCCCATATTCAATA
TTTGATCGACTGCCGCCCGCATTCCATCGCTATGGGCAATGCCATTAAGT
GGCTGCGAGGGCAAATTCACGGTTTGGACCGAGAGGCGGGGCCGGTTGAA
GCCAAGGAGAAGATCGGGGAGGTCATTGACGCCTACGTGGAGGAGAGGAT
TACCTTTGCTGCGCAGGCTTTGGCGAAGGTAGCTGTAGACAAGATCTCAG
ATGGAGACGTTGTATTGGTTTACGGGCGGTCCTATTCGGTGGAGCTGACT
TTGTTGAAGGCCAAGACGCAGGGGAAGAGTTTCAGGGTGCTGGTGGTAGA
CTCCCGTCCGCTTTTGGAAGGGCGACGATTGCTTACCACACTGTCGAAGG
CGGGAGTGAGTAGTACGTACCTGAATTTAAACGCCGTTTCGTATGTGATG
AGGGGAGTTTCTAAGGTCTTGCTGGGTGCGGCTGCCATGTTCTCGAACGG
CGCGGTTATCTCTCGAGCAGGGACTGCTGTAGTGGCCATGCTAGCCCGAC
GCTTTAATATTCCCGCTATTTTCTGCTGTGAGACGTACAAATTTTCAGAT
AAAGTGCAACTTGATTCTATTTGCTGGAATGAAGTAGGGGACCCCTTAGA
ACTCCTGCGGCCTGCGGGGAGTAATGGGGAGACAGGAGGGCAGACTGGGC
AGTTGCAGGGAAGGGATATGCAGGTGGCAGCAGCGGCGTTGCCCCCACGG
TTGAAGTTGTTAAATATCCGTTATGATTTAACACCGATGAAGTATGTATC
TTTGGTGATTACGGAAGTTGGCATGATCCCACCGACAAGTGTGCCAGTGC
TTTTGCGGGAGAGCAGTAAGGATGATGTTAATTTGAGCTTTGAGTTTTAG
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Synonyms
Publications