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Properties
| Property Name | Value |
|---|
| TranscriptId | 587545 |
| Track | FilteredModels2 |
| ProteinId | 587459 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:351543..354395 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4674 ID=mRNA_4674|Name=jgi.p|Nanoce1779_2|587459|organism=Nannochloropsis oceanica|type=mRNA|length=2656bp
ACAGGTTGTGCATTGCGCTACCGTGGGCCGGTCCTTGCCCCGTGCGTCGC
CTCATATCACCATCACCGCAGCTTGGCCCACAGCAAGGTCTCTCTTCCCG
TCCCCTACGATACTCCAATGCCCGGTCTGACCTTTCCCGCATACTTTGCC
CTGTCCTCATCCTTGACGGCGTTGGCGGTGAGCTATGCCTTCCAGTCCCG
CTCCCAGTTCTACCCGGCCGTTATTTACCTCGTTACTTCCAAACTTTCCG
TCCTCGTACTTGGCAACATGGGCCTGATGCTAACGCTTCTGGCCGGGCGC
ATTATGAAGAGTGTATTTTTGGGGCAGCTTCGGGGCGTGGAAGTGGAACT
TCTGTACGACAATGCCCGATACGCTGTGACTGAGACCTGTCTGGCCCTCA
CAATCTTCCGGGAGGAGCTGACGGTGCGCGTGCTGACGCTTTTTACAGCC
TTATTGTTTTCGAAGAGCTTTCATTGGCTATGCCAGAGTCGGGTGGAATA
TGTGGAGTCAGACAATGTCCCGCGGTGGACGCACATTCGGCTGCTAACTC
TCATGTACACATTGCTACTCTGGGACGTGGCGTTCGTGGCCGGCTGCGTC
TACTTCTGGAAGGGGCCGTCGGTGCTAATCCTTTTCGGGTTTGAGTATAC
TATCTTGGCTGTTTCGGTGACCAGTACCTTGTTACGGTATTGTTTGCATT
TGATTGACATGCGGATTGAGGGGAACTGGCCCCAAAAGGGCTCTTATATC
TTCTTCTTGGAATTTGCCACGGAAGTCGTTCGGTTTTTGTCGTACGTGGT
ATTTTTTAGTATCATTTTCACATATTACGGTATGCCTTTGCACATTGTAA
GAGATTTGTGGATGTCGTATGTTAATCTCAAGCGTCGCCTTGTCATTTTC
AACAAGTACCGACACTTGACCGCAAATATGAATGAACGCTTCCCCGACGC
CACCCCCGAAGAGCTCGTCGCCTGCGAGCACACCTGTATCATCTGCCGCG
ACCTTATGGAAGCTGGACCTGGAGCAAAAAGACTACCTTGTGCTCATATT
TTCCATCTTGACTGCCTCCGTCTATGGCTCCAGCAACAACAAAGCTGCCC
GACCTGCCGCGCTGACATTCCCACCACGGCTACCCCACCCGCTGGTACGC
CTGCCGCACAAGCCCCTGTCGAAGATGGAGGCGTCGCTGCTGCTGCTGCT
GCTGCTGCAGGACAAGGAGGAGCTGAAGCGGGTGATGAGGTGCAGCAAGG
GGTGCTGGGAGGAGTGCATGCCGCCGCGCCGCCTAACGCAGGACAGCCGG
CAGCGCCCCGGCAGCAACAACAACGACTTCAGCAGCAAGAGCGGCAACTT
CCCCGACTCGTTGACTGGCATCGAGCTGGGGGAGCAATGCCACACCATGC
GGAGCCTGCCGGAGCAGCAGCAGCAGGAGGAGCAGGAGGGGGGCCTGGTT
TGATGAGAGGTGCTGTGGGTACCGGCTTCGCCCCGCCTCTCAACTTCCCG
CACCCGCCCACCACAGTCAACGGCTCGGCCTTTCCTCCCCATCCTTCTTT
TCCCCACCCTCCCACAACTCCCGCATTTGCCGGTATTGGTGGTAATGGTG
GCATGCATTCTCATTTCCTTCCCTCCCCTTACGCTGGCTTTCCTCCCATG
TTGCCCCCGGGAGCGCTAGATGCAGGAACAGTTGCAGGCGGAGGTGGTTC
CTCCGTTTTCCAGACTACTGCCTATCAGCCGGTGCCGATGCTATTTGGTG
GTGGGATGGGACCGGCGGGAGTGTTTGGTCCTGGCCTGCGCTGGGGAGGA
GGAGAAATGGGAGGGTCGGATTTCGCGGAGAGGCCGTTTGTGTTGTATCG
TGTTGTGAGCCGGGCGGGAGCGGTTGTGCGGGCTTCAAGGAACCCTGCTT
CTCAAACCTTGCGCCTACATCGGCAGGTGAGCTTTAAAAGAGGGATAGAT
GTTTTTCGGGAAGAGGAGGAAAGTCGCTCTTTTCCCCATGGTTTTGGTGT
TTTTCACTCCTAGAATTCTCTACCACACTTCCTCCTAACTCACCTATGTT
TCTCTTCTCCACTCAACATAGCACGAAATGATTATCATCCTCGAGCGGGC
AGCAGCCTCCGAGCAGTCGGGCGGTATGGTGGTTTATCGTGTGCTGGGTG
GTGGCTTCATTCACGAGCAGGAGCAACAGCAGCAGCAGAACACGGGGGCA
CGCAGCAGCAGTTGCAGCAACAACAGCGGAACCATCTTGGAAGCCATGCC
CTCCCCACCTCCCATGCCCCTTGGAATGGCTGGCTTCTTGCCGCCCTTTT
TCTCACCCCCTAACCCATCCTTCAGCAGCTGCAGCAACAGCAACAGCAAC
AGTAGTGCAACCGGCGCGGGCATTGGTGGGGCGGGAGGGCTGTCGCGGTC
CCTTGTCTCCTTGCGGCTAGATTTGAACGAAGCGAAGGCTGGTGTTGATT
CAATGGTGGAGGGATGGGCGGTGCTCTTGGCCAAACAGCAAGTGGAGATG
CAACGTTTTCAGAGAGTCATGGCCCGCTTGGAGCAGGCACATGAGGACAT
AGCGACACAGGCAACAGCAGCAGCAGCTGCAGCAGCTGCCGTTGCGGGTT
GTGGGCCTGGGTCTGCGCAAGAGAGTGGGACTGGAGGAGAGGAAGGAGGA
CTGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|587459 >mRNA_4674-protein ID=mRNA_4674-protein|Name=jgi.p|Nanoce1779_2|587459|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MPGLTFPAYFALSSSLTALAVSYAFQSRSQFYPAVIYLVTSKLSVLVLGN
MGLMLTLLAGRIMKSVFLGQLRGVEVELLYDNARYAVTETCLALTIFREE
LTVRVLTLFTALLFSKSFHWLCQSRVEYVESDNVPRWTHIRLLTLMYTLL
LWDVAFVAGCVYFWKGPSVLILFGFEYTILAVSVTSTLLRYCLHLIDMRI
EGNWPQKGSYIFFLEFATEVVRFLSYVVFFSIIFTYYGMPLHIVRDLWMS
YVNLKRRLVIFNKYRHLTANMNERFPDATPEELVACEHTCIICRDLMEAG
PGAKRLPCAHIFHLDCLRLWLQQQQSCPTCRADIPTTATPPAGTPAAQAP
VEDGGVAAAAAAAAGQGGAEAGDEVQQGVLGGVHAAAPPNAGQPAAPRQQ
QQRLQQQERQLPRLVDWHRAGGAMPHHAEPAGAAAAGGAGGGPGLMRGAV
GTGFAPPLNFPHPPTTVNGSAFPPHPSFPHPPTTPAFAGIGGNGGMHSHF
LPSPYAGFPPMLPPGALDAGTVAGGGGSSVFQTTAYQPVPMLFGGGMGPA
GVFGPGLRWGGGEMGGSDFAERPFVLYRVVSRAGAVVRASRNPASQTLRL
HRQVSFKRGIDVFREEEESRSFPHGFGVFHS* back to topmRNA from alignment at scaffold_9:351543..354395+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4674 ID=mRNA_4674|Name=jgi.p|Nanoce1779_2|587459|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp|location=Sequence derived from alignment at scaffold_9:351543..354395+ (Nannochloropsis oceanica)
ACAGGTTGTGCATTGCGCTACCGTGGGCCGGTCCTTGCCCCGTGCGTCGC
CTCATATCACCATCACCGCAGCTTGGCCCACAGCAAGGTCTCTCTTCCCG
TCCCCTACGATACTCCAATGCCCGGTCTGACCTTTCCCGCATACTTTGCC
CTGTCCTCATCCTTGACGGCGTTGGCGGTGAGCTATGCCTTCCAGTCCCG
CTCCCAGTTCTACCCGGCCGTTATTTACCTCGTTACTTCCAAACTTTCCG
TCCTCGTACTTGGCAACATGGGTGAGTCCGTAGGAGGGGAAAAGGATGTG
AGGATGCGAGAAGGTGTGGGCAGTGTGTTTGAATGGAGGAATGAACGTGT
CCACGTCGTTTTCTTCATTCTCTCCATCTCATGCCGTGAGAAAGGGTGAT
ATTCCTTTCAGTTGCATGTCTTGCCTTTCTCACTTTCATCCCTCCCTCCC
ACCTATTCACTACTCCAGGCCTGATGCTAACGCTTCTGGCCGGGCGCATT
ATGAAGAGTGTATTTTTGGGGCAGCTTCGGGGCGTGGAAGTGGAACTTCT
GTACGACAATGCCCGATACGCTGTGACTGAGACCTGTCTGGCCCTCACAA
TCTTCCGGGAGGAGCTGACGGTGCGCGTGCTGACGCTTTTTACAGCCTTA
TTGTTTTCGAAGAGCTTTCATTGGCTATGCCAGAGTCGGGTGGAATATGT
GGAGTCAGACAATGTCCCGCGGTGGACGCACATTCGGCTGCTAACTCTCA
TGTACACATTGCTACTCTGGGACGTGGCGTTCGTGGCCGGCTGCGTCTAC
TTCTGGAAGGGGCCGTCGGTGCTAATCCTTTTCGGGTTTGAGTATACTAT
CTTGGCTGTTTCGGTGACCAGTACCTTGTTACGGTATTGTTTGCATTTGA
TTGACATGCGGATTGAGGGGAACTGGCCCCAAAAGGGCTCTTATATCTTC
TTCTTGGAATTTGCCACGGAAGTCGTTCGGTTTTTGTCGTACGTGGTATT
TTTTAGTATCATTTTCACATATTACGGTATGCCTTTGCACATTGTAAGAG
ATTTGTGGATGTCGTATGTTAATCTCAAGCGTCGCCTTGTCATTTTCAAC
AAGTACCGACACTTGACCGCAAATATGAATGAACGCTTCCCCGACGCCAC
CCCCGAAGAGCTCGTCGCCTGCGAGCACACCTGTATCATCTGCCGCGACC
TTATGGAAGCTGGACCTGGAGCAAAAAGACTACCTTGTGCTCATATTTTC
CATCTTGACTGCCTCCGTCTATGGCTCCAGCAACAACAAAGCTGCCCGAC
CTGCCGCGCTGACATTCCCACCACGGCTACCCCACCCGCTGGTACGCCTG
CCGCACAAGCCCCTGTCGAAGATGGAGGCGTCGCTGCTGCTGCTGCTGCT
GCTGCAGGACAAGGAGGAGCTGAAGCGGGTGATGAGGTGCAGCAAGGGGT
GCTGGGAGGAGTGCATGCCGCCGCGCCGCCTAACGCAGGACAGCCGGCAG
CGCCCCGGCAGCAACAACAACGACTTCAGCAGCAAGAGCGGCAACTTCCC
CGACTCGTTGACTGGCATCGAGCTGGGGGAGCAATGCCACACCATGCGGA
GCCTGCCGGAGCAGCAGCAGCAGGAGGAGCAGGAGGGGGGCCTGGTTTGA
TGAGAGGTGCTGTGGGTACCGGCTTCGCCCCGCCTCTCAACTTCCCGCAC
CCGCCCACCACAGTCAACGGCTCGGCCTTTCCTCCCCATCCTTCTTTTCC
CCACCCTCCCACAACTCCCGCATTTGCCGGTATTGGTGGTAATGGTGGCA
TGCATTCTCATTTCCTTCCCTCCCCTTACGCTGGCTTTCCTCCCATGTTG
CCCCCGGGAGCGCTAGATGCAGGAACAGTTGCAGGCGGAGGTGGTTCCTC
CGTTTTCCAGACTACTGCCTATCAGCCGGTGCCGATGCTATTTGGTGGTG
GGATGGGACCGGCGGGAGTGTTTGGTCCTGGCCTGCGCTGGGGAGGAGGA
GAAATGGGAGGGTCGGATTTCGCGGAGAGGCCGTTTGTGTTGTATCGTGT
TGTGAGCCGGGCGGGAGCGGTTGTGCGGGCTTCAAGGAACCCTGCTTCTC
AAACCTTGCGCCTACATCGGCAGGTGAGCTTTAAAAGAGGGATAGATGTT
TTTCGGGAAGAGGAGGAAAGTCGCTCTTTTCCCCATGGTTTTGGTGTTTT
TCACTCCTAGAATTCTCTACCACACTTCCTCCTAACTCACCTATGTTTCT
CTTCTCCACTCAACATAGCACGAAATGATTATCATCCTCGAGCGGGCAGC
AGCCTCCGAGCAGTCGGGCGGTATGGTGGTTTATCGTGTGCTGGGTGGTG
GCTTCATTCACGAGCAGGAGCAACAGCAGCAGCAGAACACGGGGGCACGC
AGCAGCAGTTGCAGCAACAACAGCGGAACCATCTTGGAAGCCATGCCCTC
CCCACCTCCCATGCCCCTTGGAATGGCTGGCTTCTTGCCGCCCTTTTTCT
CACCCCCTAACCCATCCTTCAGCAGCTGCAGCAACAGCAACAGCAACAGT
AGTGCAACCGGCGCGGGCATTGGTGGGGCGGGAGGGCTGTCGCGGTCCCT
TGTCTCCTTGCGGCTAGATTTGAACGAAGCGAAGGCTGGTGTTGATTCAA
TGGTGGAGGGATGGGCGGTGCTCTTGGCCAAACAGCAAGTGGAGATGCAA
CGTTTTCAGAGAGTCATGGCCCGCTTGGAGCAGGCACATGAGGACATAGC
GACACAGGCAACAGCAGCAGCAGCTGCAGCAGCTGCCGTTGCGGGTTGTG
GGCCTGGGTCTGCGCAAGAGAGTGGGACTGGAGGAGAGGAAGGAGGACTG
GGG back to topCoding sequence (CDS) from alignment at scaffold_9:351543..354395+ >mRNA_4674 ID=mRNA_4674|Name=jgi.p|Nanoce1779_2|587459|organism=Nannochloropsis oceanica|type=CDS|length=3792bp|location=Sequence derived from alignment at scaffold_9:351543..354395+ (Nannochloropsis oceanica)
ATGCCCGGTCTGACCTTTCCCGCATACTTTGCCCTGTCCTCATCCTTGAC
GGCGTTGGCGGTGAGCTATGCCTTCCAGTCCCGCTCCCAGTTCTACCCGG
CCGTTATTTACCTCGTTACTTCCAAACTTTCCGTCCTCGTACTTGGCAAC
ATGGGCCTGATGCTAACGCTTCTGGCCGGGCGCATTATGAAGAGTGTATT
TTTGGGGCAGCTTCGGGGCGTGGAAGTGGAACTTCTGTACGACAATGCCC
GATACGCTGTGACTGAGACCTGTCTGGCCCTCACAATCTTCCGGGAGGAG
CTGACGGTGCGCGTGCTGACGCTTTTTACAGCCTTATTGTTTTCGAAGAG
CTTTCATTGGCTATGCCAGAGTCGGGTGGAATATGTGGAGTCAGACAATG
TCCCGCGGTGGACGCACATTCGGCTGCTAACTCTCATGTACACATTGCTA
CTCTGGGACGTGGCGTTCGTGGCCGGCTGCGTCTACTTCTGGAAGGGGCC
GTCGGTGCTAATCCTTTTCGGGTTTGAGTATACTATCTTGGCTGTTTCGG
TGACCAGTACCTTGTTACGGTATTGTTTGCATTTGATTGACATGCGGATT
GAGGGGAACTGGCCCCAAAAGGGCTCTTATATCTTCTTCTTGGAATTTGC
CACGGAAGTCGTTCGGTTTTTGTCGTACGTGGTATTTTTTAGTATCATTT
TCACATATTACGGTATGCCTTTGCACATTGTAAGAGATTTGTGGATGTCG
TATGTTAATCTCAAGCGTCGCCTTGTCATTTTCAACAAGTACCGACACTT
GACCGCAAATATGAATGAACGCTTCCCCGACGCCACCCCCGAAGAGCTCG
TCGCCTGCGAGCACACCTGTATCATCTGCCGCGACCTTATGGAAGCTGGA
CCTGGAGCAAAAAGACTACCTTGTGCTCATATTTTCCATCTTGACTGCCT
CCGTCTATGGCTCCAGCAACAACAAAGCTGCCCGACCTGCCGCGCTGACA
TTCCCACCACGGCTACCCCACCCGCTGGTACGCCTGCCGCACAAGCCCCT
GTCGAAGATGGAGGCGTCGCTGCTGCTGCTGCTGCTGCTGCAGGACAAGG
AGGAGCTGAAGCGGGTGATGAGGTGCAGCAAGGGGTGCTGGGAGGAGTGC
ATGCCGCCGCGCCGCCTAACGCAGGACAGCCGGCAGCGCCCCGGCAGCAA
CAACAACGACTTCAGCAGCAAGAGCGGCAACTTCCCCGACTCGTTGACTG
GCATCGAGCTGGGGGAGCAATGCCACACCATGCGGAGCCTGCCGGAGCAG
CAGCAGCAGGAGGAGCAGGAGGGGGGCCTGGTTTGATGAGAGGTGCTGTG
GGTACCGGCTTCGCCCCGCCTCTCAACTTCCCGCACCCGCCCACCACAGT
CAACGGCTCGGCCTTTCCTCCCCATCCTTCTTTTCCCCACCCTCCCACAA
CTCCCGCATTTGCCGGTATTGGTGGTAATGGTGGCATGCATTCTCATTTC
CTTCCCTCCCCTTACGCTGGCTTTCCTCCCATGTTGCCCCCGGGAGCGCT
AGATGCAGGAACAGTTGCAGGCGGAGGTGGTTCCTCCGTTTTCCAGACTA
CTGCCTATCAGCCGGTGCCGATGCTATTTGGTGGTGGGATGGGACCGGCG
GGAGTGTTTGGTCCTGGCCTGCGCTGGGGAGGAGGAGAAATGGGAGGGTC
GGATTTCGCGGAGAGGCCGTTTGTGTTGTATCGTGTTGTGAGCCGGGCGG
GAGCGGTTGTGCGGGCTTCAAGGAACCCTGCTTCTCAAACCTTGCGCCTA
CATCGGCAGGTGAGCTTTAAAAGAGGGATAGATGTTTTTCGGGAAGAGGA
GGAAAGTCGCTCTTTTCCCCATGGTTTTGGTGTTTTTCACTCCTAGATGC
CCGGTCTGACCTTTCCCGCATACTTTGCCCTGTCCTCATCCTTGACGGCG
TTGGCGGTGAGCTATGCCTTCCAGTCCCGCTCCCAGTTCTACCCGGCCGT
TATTTACCTCGTTACTTCCAAACTTTCCGTCCTCGTACTTGGCAACATGG
GCCTGATGCTAACGCTTCTGGCCGGGCGCATTATGAAGAGTGTATTTTTG
GGGCAGCTTCGGGGCGTGGAAGTGGAACTTCTGTACGACAATGCCCGATA
CGCTGTGACTGAGACCTGTCTGGCCCTCACAATCTTCCGGGAGGAGCTGA
CGGTGCGCGTGCTGACGCTTTTTACAGCCTTATTGTTTTCGAAGAGCTTT
CATTGGCTATGCCAGAGTCGGGTGGAATATGTGGAGTCAGACAATGTCCC
GCGGTGGACGCACATTCGGCTGCTAACTCTCATGTACACATTGCTACTCT
GGGACGTGGCGTTCGTGGCCGGCTGCGTCTACTTCTGGAAGGGGCCGTCG
GTGCTAATCCTTTTCGGGTTTGAGTATACTATCTTGGCTGTTTCGGTGAC
CAGTACCTTGTTACGGTATTGTTTGCATTTGATTGACATGCGGATTGAGG
GGAACTGGCCCCAAAAGGGCTCTTATATCTTCTTCTTGGAATTTGCCACG
GAAGTCGTTCGGTTTTTGTCGTACGTGGTATTTTTTAGTATCATTTTCAC
ATATTACGGTATGCCTTTGCACATTGTAAGAGATTTGTGGATGTCGTATG
TTAATCTCAAGCGTCGCCTTGTCATTTTCAACAAGTACCGACACTTGACC
GCAAATATGAATGAACGCTTCCCCGACGCCACCCCCGAAGAGCTCGTCGC
CTGCGAGCACACCTGTATCATCTGCCGCGACCTTATGGAAGCTGGACCTG
GAGCAAAAAGACTACCTTGTGCTCATATTTTCCATCTTGACTGCCTCCGT
CTATGGCTCCAGCAACAACAAAGCTGCCCGACCTGCCGCGCTGACATTCC
CACCACGGCTACCCCACCCGCTGGTACGCCTGCCGCACAAGCCCCTGTCG
AAGATGGAGGCGTCGCTGCTGCTGCTGCTGCTGCTGCAGGACAAGGAGGA
GCTGAAGCGGGTGATGAGGTGCAGCAAGGGGTGCTGGGAGGAGTGCATGC
CGCCGCGCCGCCTAACGCAGGACAGCCGGCAGCGCCCCGGCAGCAACAAC
AACGACTTCAGCAGCAAGAGCGGCAACTTCCCCGACTCGTTGACTGGCAT
CGAGCTGGGGGAGCAATGCCACACCATGCGGAGCCTGCCGGAGCAGCAGC
AGCAGGAGGAGCAGGAGGGGGGCCTGGTTTGATGAGAGGTGCTGTGGGTA
CCGGCTTCGCCCCGCCTCTCAACTTCCCGCACCCGCCCACCACAGTCAAC
GGCTCGGCCTTTCCTCCCCATCCTTCTTTTCCCCACCCTCCCACAACTCC
CGCATTTGCCGGTATTGGTGGTAATGGTGGCATGCATTCTCATTTCCTTC
CCTCCCCTTACGCTGGCTTTCCTCCCATGTTGCCCCCGGGAGCGCTAGAT
GCAGGAACAGTTGCAGGCGGAGGTGGTTCCTCCGTTTTCCAGACTACTGC
CTATCAGCCGGTGCCGATGCTATTTGGTGGTGGGATGGGACCGGCGGGAG
TGTTTGGTCCTGGCCTGCGCTGGGGAGGAGGAGAAATGGGAGGGTCGGAT
TTCGCGGAGAGGCCGTTTGTGTTGTATCGTGTTGTGAGCCGGGCGGGAGC
GGTTGTGCGGGCTTCAAGGAACCCTGCTTCTCAAACCTTGCGCCTACATC
GGCAGGTGAGCTTTAAAAGAGGGATAGATGTTTTTCGGGAAGAGGAGGAA
AGTCGCTCTTTTCCCCATGGTTTTGGTGTTTTTCACTCCTAG back to top
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